Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24860 and AO356_24865 are separated by 217 nucleotides AO356_24865 and AO356_24870 are separated by 3 nucleotides AO356_24870 and AO356_24875 are separated by 343 nucleotides
AO356_24860: AO356_24860 - cytochrome C biogenesis protein, at 5,633,440 to 5,634,648
_24860
AO356_24865: AO356_24865 - Valyl-tRNA synthetase, at 5,634,866 to 5,635,195
_24865
AO356_24870: AO356_24870 - Fis family transcriptional regulator, at 5,635,199 to 5,637,064
_24870
AO356_24875: AO356_24875 - ATP-NAD kinase, at 5,637,408 to 5,638,481
_24875
Position (kb) 5635
5636
5637
5638 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5634.307 kb on + strand, within AO356_24860 at 5634.308 kb on - strand, within AO356_24860 at 5634.340 kb on + strand, within AO356_24860 at 5634.341 kb on - strand, within AO356_24860 at 5634.341 kb on - strand, within AO356_24860 at 5634.365 kb on - strand, within AO356_24860 at 5634.365 kb on - strand, within AO356_24860 at 5634.409 kb on + strand, within AO356_24860 at 5634.437 kb on + strand, within AO356_24860 at 5634.438 kb on - strand, within AO356_24860 at 5634.493 kb on + strand, within AO356_24860 at 5634.538 kb on + strand at 5634.538 kb on + strand at 5634.538 kb on + strand at 5634.538 kb on + strand at 5634.539 kb on - strand at 5634.654 kb on - strand at 5634.793 kb on + strand at 5634.794 kb on - strand at 5634.794 kb on - strand at 5634.794 kb on - strand at 5635.109 kb on + strand, within AO356_24865 at 5635.109 kb on + strand, within AO356_24865 at 5635.109 kb on + strand, within AO356_24865 at 5635.110 kb on - strand, within AO356_24865 at 5635.154 kb on + strand, within AO356_24865 at 5635.155 kb on - strand, within AO356_24865 at 5635.155 kb on - strand, within AO356_24865 at 5635.155 kb on - strand, within AO356_24865 at 5635.157 kb on + strand, within AO356_24865 at 5635.158 kb on - strand, within AO356_24865 at 5635.251 kb on + strand at 5636.280 kb on + strand, within AO356_24870 at 5636.296 kb on - strand, within AO356_24870 at 5636.376 kb on + strand, within AO356_24870 at 5636.793 kb on + strand, within AO356_24870 at 5636.807 kb on + strand, within AO356_24870 at 5637.104 kb on + strand at 5637.104 kb on + strand at 5637.104 kb on + strand at 5637.310 kb on + strand at 5637.345 kb on + strand at 5637.345 kb on + strand at 5637.345 kb on + strand at 5637.346 kb on - strand at 5637.346 kb on - strand at 5637.346 kb on - strand at 5637.360 kb on + strand at 5637.360 kb on + strand at 5637.360 kb on + strand at 5637.360 kb on + strand at 5637.361 kb on - strand at 5637.361 kb on - strand at 5637.361 kb on - strand at 5637.361 kb on - strand at 5637.361 kb on - strand at 5637.888 kb on + strand, within AO356_24875
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 5,634,307 + AO356_24860 0.72 -1.5 5,634,308 - AO356_24860 0.72 +1.2 5,634,340 + AO356_24860 0.74 -0.2 5,634,341 - AO356_24860 0.75 -0.2 5,634,341 - AO356_24860 0.75 +0.4 5,634,365 - AO356_24860 0.77 -3.2 5,634,365 - AO356_24860 0.77 -0.2 5,634,409 + AO356_24860 0.80 -1.2 5,634,437 + AO356_24860 0.82 -1.2 5,634,438 - AO356_24860 0.83 -2.2 5,634,493 + AO356_24860 0.87 +0.8 5,634,538 + -1.2 5,634,538 + -2.2 5,634,538 + -1.9 5,634,538 + -0.2 5,634,539 - +0.2 5,634,654 - -2.7 5,634,793 + +1.2 5,634,794 - -1.2 5,634,794 - -1.2 5,634,794 - -1.2 5,635,109 + AO356_24865 0.74 -1.2 5,635,109 + AO356_24865 0.74 -1.2 5,635,109 + AO356_24865 0.74 +0.4 5,635,110 - AO356_24865 0.74 -1.2 5,635,154 + AO356_24865 0.87 +0.4 5,635,155 - AO356_24865 0.88 +0.4 5,635,155 - AO356_24865 0.88 -1.6 5,635,155 - AO356_24865 0.88 -1.4 5,635,157 + AO356_24865 0.88 -0.2 5,635,158 - AO356_24865 0.88 -0.8 5,635,251 + -1.2 5,636,280 + AO356_24870 0.58 -1.2 5,636,296 - AO356_24870 0.59 -1.2 5,636,376 + AO356_24870 0.63 +0.1 5,636,793 + AO356_24870 0.85 -2.2 5,636,807 + AO356_24870 0.86 +1.2 5,637,104 + -1.2 5,637,104 + +0.4 5,637,104 + +0.4 5,637,310 + -1.2 5,637,345 + +0.4 5,637,345 + +0.2 5,637,345 + -1.2 5,637,346 - -1.5 5,637,346 - -1.2 5,637,346 - -0.2 5,637,360 + -0.2 5,637,360 + -1.2 5,637,360 + -0.2 5,637,360 + +1.4 5,637,361 - -1.2 5,637,361 - +1.2 5,637,361 - -1.7 5,637,361 - -1.2 5,637,361 - -1.2 5,637,888 + AO356_24875 0.45 +0.4
Or see this region's nucleotide sequence