Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21075

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21065 and AO356_21070 are separated by 473 nucleotidesAO356_21070 and AO356_21075 are separated by 121 nucleotidesAO356_21075 and AO356_21080 overlap by 8 nucleotides AO356_21065: AO356_21065 - hypothetical protein, at 4,685,078 to 4,688,668 _21065 AO356_21070: AO356_21070 - hypothetical protein, at 4,689,142 to 4,689,498 _21070 AO356_21075: AO356_21075 - glucoamylase, at 4,689,620 to 4,691,443 _21075 AO356_21080: AO356_21080 - sugar dehydrogenase, at 4,691,436 to 4,692,236 _21080 Position (kb) 4689 4690 4691 4692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.622 kb on - strandat 4688.622 kb on - strandat 4688.630 kb on + strandat 4688.631 kb on - strandat 4688.631 kb on - strandat 4688.631 kb on - strandat 4688.666 kb on + strandat 4688.667 kb on - strandat 4688.779 kb on + strandat 4688.782 kb on - strandat 4689.077 kb on + strandat 4689.077 kb on + strandat 4689.077 kb on + strandat 4689.078 kb on - strandat 4689.080 kb on - strandat 4689.921 kb on + strand, within AO356_21075at 4690.107 kb on + strand, within AO356_21075at 4690.107 kb on + strand, within AO356_21075at 4690.108 kb on - strand, within AO356_21075at 4690.108 kb on - strand, within AO356_21075at 4690.342 kb on - strand, within AO356_21075at 4690.342 kb on - strand, within AO356_21075at 4690.404 kb on + strand, within AO356_21075at 4690.564 kb on + strand, within AO356_21075at 4690.565 kb on - strand, within AO356_21075at 4690.565 kb on - strand, within AO356_21075at 4690.566 kb on + strand, within AO356_21075at 4690.566 kb on + strand, within AO356_21075at 4690.566 kb on + strand, within AO356_21075at 4690.567 kb on - strand, within AO356_21075at 4690.567 kb on - strand, within AO356_21075at 4690.913 kb on - strand, within AO356_21075at 4690.913 kb on - strand, within AO356_21075at 4690.913 kb on - strand, within AO356_21075at 4691.050 kb on - strand, within AO356_21075at 4691.226 kb on + strand, within AO356_21075at 4691.227 kb on - strand, within AO356_21075at 4691.227 kb on - strand, within AO356_21075at 4691.227 kb on - strand, within AO356_21075at 4691.506 kb on + strandat 4691.506 kb on + strandat 4691.743 kb on + strand, within AO356_21080at 4691.743 kb on + strand, within AO356_21080at 4692.124 kb on + strand, within AO356_21080at 4692.124 kb on + strand, within AO356_21080at 4692.125 kb on - strand, within AO356_21080at 4692.125 kb on - strand, within AO356_21080at 4692.228 kb on + strandat 4692.263 kb on + strandat 4692.263 kb on + strandat 4692.263 kb on + strandat 4692.264 kb on - strandat 4692.317 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.364 kb on + strandat 4692.365 kb on - strandat 4692.365 kb on - strandat 4692.365 kb on - strandat 4692.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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4,688,621 + -0.8
4,688,621 + -0.3
4,688,621 + +0.2
4,688,621 + +1.7
4,688,621 + +1.2
4,688,622 - -0.8
4,688,622 - -0.8
4,688,630 + -0.8
4,688,631 - -2.1
4,688,631 - +1.5
4,688,631 - +0.2
4,688,666 + +0.7
4,688,667 - +0.6
4,688,779 + -0.5
4,688,782 - -0.8
4,689,077 + -0.1
4,689,077 + +0.1
4,689,077 + -0.8
4,689,078 - +0.4
4,689,080 - +0.2
4,689,921 + AO356_21075 0.17 -2.8
4,690,107 + AO356_21075 0.27 +0.2
4,690,107 + AO356_21075 0.27 +0.7
4,690,108 - AO356_21075 0.27 +0.8
4,690,108 - AO356_21075 0.27 +2.3
4,690,342 - AO356_21075 0.40 +0.3
4,690,342 - AO356_21075 0.40 -0.4
4,690,404 + AO356_21075 0.43 -0.8
4,690,564 + AO356_21075 0.52 -0.8
4,690,565 - AO356_21075 0.52 -0.2
4,690,565 - AO356_21075 0.52 +0.5
4,690,566 + AO356_21075 0.52 -1.4
4,690,566 + AO356_21075 0.52 -0.8
4,690,566 + AO356_21075 0.52 -0.8
4,690,567 - AO356_21075 0.52 -1.5
4,690,567 - AO356_21075 0.52 +0.2
4,690,913 - AO356_21075 0.71 +0.5
4,690,913 - AO356_21075 0.71 +1.6
4,690,913 - AO356_21075 0.71 -0.8
4,691,050 - AO356_21075 0.78 -0.8
4,691,226 + AO356_21075 0.88 -0.8
4,691,227 - AO356_21075 0.88 +0.7
4,691,227 - AO356_21075 0.88 -0.8
4,691,227 - AO356_21075 0.88 -1.8
4,691,506 + +1.5
4,691,506 + -0.8
4,691,743 + AO356_21080 0.38 +1.5
4,691,743 + AO356_21080 0.38 -0.8
4,692,124 + AO356_21080 0.86 -0.8
4,692,124 + AO356_21080 0.86 -0.8
4,692,125 - AO356_21080 0.86 -1.1
4,692,125 - AO356_21080 0.86 -0.4
4,692,228 + -0.8
4,692,263 + +0.7
4,692,263 + -0.0
4,692,263 + -1.3
4,692,264 - -0.8
4,692,317 + -1.8
4,692,364 + -0.8
4,692,364 + -0.8
4,692,364 + -1.1
4,692,364 + -0.8
4,692,364 + -1.8
4,692,364 + -1.4
4,692,364 + +0.2
4,692,364 + +0.2
4,692,364 + +0.2
4,692,365 - +0.7
4,692,365 - +0.2
4,692,365 - -0.0
4,692,365 - +1.2

Or see this region's nucleotide sequence