Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20770 and AO356_20775 are separated by 128 nucleotides AO356_20775 and AO356_20780 are separated by 400 nucleotides AO356_20780 and AO356_20785 are separated by 156 nucleotides AO356_20785 and AO356_20790 are separated by 352 nucleotides
AO356_20770: AO356_20770 - hypothetical protein, at 4,629,164 to 4,629,787
_20770
AO356_20775: AO356_20775 - short-chain dehydrogenase, at 4,629,916 to 4,630,194
_20775
AO356_20780: AO356_20780 - diguanylate cyclase, at 4,630,595 to 4,632,784
_20780
AO356_20785: AO356_20785 - hypothetical protein, at 4,632,941 to 4,633,126
_20785
AO356_20790: AO356_20790 - hypothetical protein, at 4,633,479 to 4,633,895
_20790
Position (kb) 4630
4631
4632
4633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.637 kb on - strand, within AO356_20770 at 4629.637 kb on - strand, within AO356_20770 at 4629.767 kb on + strand at 4629.767 kb on + strand at 4629.768 kb on - strand at 4629.768 kb on - strand at 4629.785 kb on + strand at 4629.785 kb on + strand at 4629.786 kb on - strand at 4629.917 kb on + strand at 4629.917 kb on + strand at 4629.917 kb on + strand at 4629.918 kb on - strand at 4629.918 kb on - strand at 4629.918 kb on - strand at 4630.123 kb on + strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.185 kb on - strand at 4630.185 kb on - strand at 4630.194 kb on + strand at 4630.194 kb on + strand at 4630.194 kb on + strand at 4630.194 kb on + strand at 4630.195 kb on - strand at 4630.195 kb on - strand at 4630.195 kb on - strand at 4630.198 kb on + strand at 4630.198 kb on + strand at 4630.198 kb on + strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.268 kb on + strand at 4630.269 kb on - strand at 4630.269 kb on - strand at 4630.269 kb on - strand at 4630.271 kb on - strand at 4630.326 kb on + strand at 4630.326 kb on + strand at 4630.326 kb on + strand at 4630.326 kb on + strand at 4630.327 kb on - strand at 4630.327 kb on - strand at 4630.330 kb on + strand at 4630.331 kb on - strand at 4630.331 kb on - strand at 4630.331 kb on - strand at 4630.349 kb on + strand at 4630.350 kb on - strand at 4630.350 kb on - strand at 4630.364 kb on + strand at 4630.364 kb on + strand at 4630.364 kb on + strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.372 kb on - strand at 4630.372 kb on - strand at 4630.394 kb on + strand at 4630.395 kb on - strand at 4630.395 kb on - strand at 4630.417 kb on + strand at 4630.417 kb on + strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.435 kb on - strand at 4630.523 kb on + strand at 4630.524 kb on - strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.775 kb on + strand at 4630.775 kb on + strand at 4630.775 kb on + strand at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.912 kb on - strand, within AO356_20780 at 4630.912 kb on - strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.962 kb on - strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.979 kb on - strand, within AO356_20780 at 4630.979 kb on - strand, within AO356_20780 at 4630.979 kb on - strand, within AO356_20780 at 4631.180 kb on + strand, within AO356_20780 at 4631.181 kb on - strand, within AO356_20780 at 4631.181 kb on - strand, within AO356_20780 at 4631.387 kb on - strand, within AO356_20780 at 4631.792 kb on + strand, within AO356_20780 at 4631.792 kb on + strand, within AO356_20780 at 4631.793 kb on - strand, within AO356_20780 at 4631.793 kb on - strand, within AO356_20780 at 4631.987 kb on + strand, within AO356_20780 at 4631.987 kb on + strand, within AO356_20780 at 4631.987 kb on + strand, within AO356_20780 at 4631.987 kb on + strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4631.988 kb on - strand, within AO356_20780 at 4632.344 kb on + strand, within AO356_20780 at 4632.345 kb on - strand, within AO356_20780 at 4632.728 kb on + strand at 4632.913 kb on + strand at 4632.954 kb on - strand at 4632.954 kb on - strand at 4633.016 kb on + strand, within AO356_20785 at 4633.017 kb on - strand, within AO356_20785 at 4633.183 kb on - strand at 4633.234 kb on + strand at 4633.239 kb on - strand at 4633.247 kb on + strand at 4633.293 kb on + strand at 4633.293 kb on + strand at 4633.293 kb on + strand at 4633.294 kb on - strand at 4633.294 kb on - strand at 4633.294 kb on - strand at 4633.294 kb on - strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.297 kb on + strand at 4633.298 kb on - strand at 4633.298 kb on - strand at 4633.325 kb on + strand at 4633.326 kb on - strand at 4633.326 kb on - strand at 4633.365 kb on + strand at 4633.366 kb on - strand at 4633.370 kb on + strand at 4633.417 kb on + strand at 4633.475 kb on + strand at 4633.475 kb on + strand at 4633.476 kb on - strand at 4633.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 4,629,632 + AO356_20770 0.75 -0.8 4,629,632 + AO356_20770 0.75 +0.7 4,629,632 + AO356_20770 0.75 +0.4 4,629,632 + AO356_20770 0.75 +1.8 4,629,632 + AO356_20770 0.75 +1.5 4,629,633 - AO356_20770 0.75 +0.8 4,629,633 - AO356_20770 0.75 +1.2 4,629,633 - AO356_20770 0.75 +0.2 4,629,633 - AO356_20770 0.75 +0.6 4,629,633 - AO356_20770 0.75 +0.3 4,629,633 - AO356_20770 0.75 +0.7 4,629,633 - AO356_20770 0.75 -1.5 4,629,636 + AO356_20770 0.76 -0.8 4,629,636 + AO356_20770 0.76 +0.6 4,629,636 + AO356_20770 0.76 +0.7 4,629,636 + AO356_20770 0.76 -0.4 4,629,636 + AO356_20770 0.76 -1.2 4,629,637 - AO356_20770 0.76 +1.8 4,629,637 - AO356_20770 0.76 -0.0 4,629,767 + +0.1 4,629,767 + +0.8 4,629,768 - +0.3 4,629,768 - +0.2 4,629,785 + +0.7 4,629,785 + -0.4 4,629,786 - +0.5 4,629,917 + -1.8 4,629,917 + +0.2 4,629,917 + +1.2 4,629,918 - +0.6 4,629,918 - -0.1 4,629,918 - +0.8 4,630,123 + AO356_20775 0.74 -0.5 4,630,146 - AO356_20775 0.82 +1.1 4,630,146 - AO356_20775 0.82 +0.2 4,630,146 - AO356_20775 0.82 -1.3 4,630,146 - AO356_20775 0.82 -1.1 4,630,184 + +0.1 4,630,184 + +1.0 4,630,184 + +0.2 4,630,184 + -0.3 4,630,184 + -0.5 4,630,184 + -1.8 4,630,184 + -0.2 4,630,185 - +0.5 4,630,185 - +0.8 4,630,194 + -0.5 4,630,194 + +0.2 4,630,194 + -0.5 4,630,194 + +0.8 4,630,195 - +0.2 4,630,195 - +0.7 4,630,195 - +1.2 4,630,198 + -1.0 4,630,198 + -1.5 4,630,198 + +2.0 4,630,199 - -0.2 4,630,199 - +0.2 4,630,199 - -1.2 4,630,199 - -0.2 4,630,199 - -0.2 4,630,199 - -0.8 4,630,268 + -3.4 4,630,269 - +0.4 4,630,269 - +0.9 4,630,269 - -0.6 4,630,271 - +1.7 4,630,326 + -0.2 4,630,326 + -0.8 4,630,326 + -0.8 4,630,326 + -0.5 4,630,327 - +0.7 4,630,327 - +0.8 4,630,330 + -0.8 4,630,331 - +0.3 4,630,331 - +1.0 4,630,331 - +1.0 4,630,349 + -0.2 4,630,350 - -0.0 4,630,350 - -0.4 4,630,364 + +1.1 4,630,364 + -0.3 4,630,364 + -0.2 4,630,365 - -1.4 4,630,365 - +0.8 4,630,365 - -0.8 4,630,365 - +1.6 4,630,365 - +0.8 4,630,371 + -0.1 4,630,371 + -0.8 4,630,371 + -0.5 4,630,371 + -1.4 4,630,371 + -0.8 4,630,371 + -1.0 4,630,371 + +1.0 4,630,372 - +2.2 4,630,372 - +0.8 4,630,394 + +0.8 4,630,395 - +0.2 4,630,395 - -0.2 4,630,417 + -0.2 4,630,417 + +0.2 4,630,418 - +0.8 4,630,418 - -1.2 4,630,418 - -0.3 4,630,418 - +0.1 4,630,418 - +0.8 4,630,418 - +0.6 4,630,418 - +1.1 4,630,435 - +0.9 4,630,523 + +1.2 4,630,524 - -0.5 4,630,526 + -0.8 4,630,526 + +0.8 4,630,526 + -0.8 4,630,526 + +2.0 4,630,526 + -0.8 4,630,526 + -0.3 4,630,526 + +0.4 4,630,526 + -0.3 4,630,526 + -0.8 4,630,526 + -1.4 4,630,527 - +0.3 4,630,527 - -1.5 4,630,527 - -0.5 4,630,527 - -0.0 4,630,527 - -0.1 4,630,775 + +0.8 4,630,775 + -0.2 4,630,775 + +0.8 4,630,907 + AO356_20780 0.14 -1.4 4,630,907 + AO356_20780 0.14 +0.0 4,630,907 + AO356_20780 0.14 -0.6 4,630,907 + AO356_20780 0.14 -0.2 4,630,907 + AO356_20780 0.14 -1.2 4,630,907 + AO356_20780 0.14 -0.8 4,630,907 + AO356_20780 0.14 +0.2 4,630,907 + AO356_20780 0.14 +1.1 4,630,907 + AO356_20780 0.14 -0.2 4,630,907 + AO356_20780 0.14 +1.0 4,630,907 + AO356_20780 0.14 +1.2 4,630,907 + AO356_20780 0.14 -0.0 4,630,907 + AO356_20780 0.14 +0.6 4,630,908 - AO356_20780 0.14 -0.5 4,630,908 - AO356_20780 0.14 -0.3 4,630,908 - AO356_20780 0.14 -0.1 4,630,908 - AO356_20780 0.14 -0.8 4,630,909 + AO356_20780 0.14 +2.6 4,630,909 + AO356_20780 0.14 -0.3 4,630,909 + AO356_20780 0.14 +1.6 4,630,909 + AO356_20780 0.14 +0.2 4,630,910 - AO356_20780 0.14 +0.5 4,630,910 - AO356_20780 0.14 -0.5 4,630,910 - AO356_20780 0.14 +2.0 4,630,910 - AO356_20780 0.14 -0.1 4,630,910 - AO356_20780 0.14 -2.4 4,630,910 - AO356_20780 0.14 -0.8 4,630,910 - AO356_20780 0.14 +0.0 4,630,910 - AO356_20780 0.14 -0.8 4,630,911 + AO356_20780 0.14 +0.5 4,630,911 + AO356_20780 0.14 +0.6 4,630,911 + AO356_20780 0.14 +0.2 4,630,911 + AO356_20780 0.14 +0.2 4,630,911 + AO356_20780 0.14 -0.8 4,630,912 - AO356_20780 0.14 -0.2 4,630,912 - AO356_20780 0.14 +0.1 4,630,961 + AO356_20780 0.17 +2.5 4,630,961 + AO356_20780 0.17 +0.2 4,630,961 + AO356_20780 0.17 +0.5 4,630,961 + AO356_20780 0.17 +0.8 4,630,962 - AO356_20780 0.17 -0.2 4,630,976 + AO356_20780 0.17 -0.2 4,630,976 + AO356_20780 0.17 -0.6 4,630,976 + AO356_20780 0.17 -0.3 4,630,976 + AO356_20780 0.17 -0.2 4,630,979 - AO356_20780 0.18 -1.8 4,630,979 - AO356_20780 0.18 +0.6 4,630,979 - AO356_20780 0.18 -1.1 4,631,180 + AO356_20780 0.27 -0.8 4,631,181 - AO356_20780 0.27 -0.4 4,631,181 - AO356_20780 0.27 +0.4 4,631,387 - AO356_20780 0.36 +0.1 4,631,792 + AO356_20780 0.55 -1.1 4,631,792 + AO356_20780 0.55 +0.2 4,631,793 - AO356_20780 0.55 +1.5 4,631,793 - AO356_20780 0.55 +0.2 4,631,987 + AO356_20780 0.64 +1.4 4,631,987 + AO356_20780 0.64 +0.2 4,631,987 + AO356_20780 0.64 +0.2 4,631,987 + AO356_20780 0.64 +0.2 4,631,988 - AO356_20780 0.64 -0.2 4,631,988 - AO356_20780 0.64 -0.0 4,631,988 - AO356_20780 0.64 -0.2 4,631,988 - AO356_20780 0.64 +1.2 4,632,344 + AO356_20780 0.80 +1.2 4,632,345 - AO356_20780 0.80 +1.5 4,632,728 + -1.4 4,632,913 + -0.8 4,632,954 - +0.8 4,632,954 - -0.2 4,633,016 + AO356_20785 0.40 +0.2 4,633,017 - AO356_20785 0.41 +0.8 4,633,183 - +0.2 4,633,234 + +0.2 4,633,239 - +0.1 4,633,247 + +1.8 4,633,293 + +0.5 4,633,293 + -1.8 4,633,293 + +0.8 4,633,294 - +0.8 4,633,294 - +0.2 4,633,294 - -0.8 4,633,294 - -1.0 4,633,297 + +0.2 4,633,297 + -2.4 4,633,297 + +0.2 4,633,297 + +0.2 4,633,297 + -0.8 4,633,298 - -0.8 4,633,298 - +0.0 4,633,325 + +0.2 4,633,326 - +0.3 4,633,326 - -0.8 4,633,365 + -0.2 4,633,366 - -0.8 4,633,370 + -1.4 4,633,417 + -0.8 4,633,475 + +0.2 4,633,475 + +0.2 4,633,476 - -0.2 4,633,504 + +0.2
Or see this region's nucleotide sequence