Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20135

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20125 and AO356_20130 overlap by 11 nucleotidesAO356_20130 and AO356_20135 are separated by 20 nucleotidesAO356_20135 and AO356_20140 are separated by 148 nucleotidesAO356_20140 and AO356_20145 are separated by 105 nucleotides AO356_20125: AO356_20125 - 23S rRNA pseudouridylate synthase, at 4,505,225 to 4,506,181 _20125 AO356_20130: AO356_20130 - HAD family hydrolase, at 4,506,171 to 4,506,833 _20130 AO356_20135: AO356_20135 - peptidase S49, at 4,506,854 to 4,507,843 _20135 AO356_20140: AO356_20140 - septum formation inhibitor Maf, at 4,507,992 to 4,508,570 _20140 AO356_20145: AO356_20145 - metal-binding protein, at 4,508,676 to 4,509,203 _20145 Position (kb) 4506 4507 4508Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4505.975 kb on - strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.348 kb on + strand, within AO356_20130at 4506.394 kb on - strand, within AO356_20130at 4506.394 kb on - strand, within AO356_20130at 4506.394 kb on - strand, within AO356_20130at 4506.405 kb on + strand, within AO356_20130at 4506.406 kb on - strand, within AO356_20130at 4506.455 kb on + strand, within AO356_20130at 4506.558 kb on + strand, within AO356_20130at 4506.625 kb on + strand, within AO356_20130at 4506.732 kb on + strand, within AO356_20130at 4506.733 kb on - strand, within AO356_20130at 4506.832 kb on - strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4507.007 kb on + strand, within AO356_20135at 4507.007 kb on + strand, within AO356_20135at 4507.008 kb on - strand, within AO356_20135at 4507.008 kb on - strand, within AO356_20135at 4507.008 kb on - strand, within AO356_20135at 4507.079 kb on + strand, within AO356_20135at 4507.079 kb on + strand, within AO356_20135at 4507.141 kb on + strand, within AO356_20135at 4507.141 kb on + strand, within AO356_20135at 4507.141 kb on + strand, within AO356_20135at 4507.142 kb on - strand, within AO356_20135at 4507.142 kb on - strand, within AO356_20135at 4507.142 kb on - strand, within AO356_20135at 4507.244 kb on + strand, within AO356_20135at 4507.245 kb on - strand, within AO356_20135at 4507.245 kb on - strand, within AO356_20135at 4507.282 kb on + strand, within AO356_20135at 4507.292 kb on + strand, within AO356_20135at 4507.329 kb on - strand, within AO356_20135at 4507.329 kb on - strand, within AO356_20135at 4507.331 kb on + strand, within AO356_20135at 4507.331 kb on + strand, within AO356_20135at 4507.332 kb on - strand, within AO356_20135at 4507.332 kb on - strand, within AO356_20135at 4507.332 kb on - strand, within AO356_20135at 4507.358 kb on + strand, within AO356_20135at 4507.358 kb on + strand, within AO356_20135at 4507.359 kb on - strand, within AO356_20135at 4507.359 kb on - strand, within AO356_20135at 4507.359 kb on - strand, within AO356_20135at 4507.457 kb on + strand, within AO356_20135at 4507.458 kb on - strand, within AO356_20135at 4507.546 kb on + strand, within AO356_20135at 4508.097 kb on + strand, within AO356_20140at 4508.098 kb on - strand, within AO356_20140at 4508.098 kb on - strand, within AO356_20140at 4508.137 kb on + strand, within AO356_20140at 4508.138 kb on - strand, within AO356_20140at 4508.138 kb on - strand, within AO356_20140at 4508.138 kb on - strand, within AO356_20140at 4508.158 kb on + strand, within AO356_20140at 4508.159 kb on - strand, within AO356_20140at 4508.159 kb on - strand, within AO356_20140at 4508.192 kb on + strand, within AO356_20140at 4508.192 kb on + strand, within AO356_20140at 4508.192 kb on + strand, within AO356_20140at 4508.193 kb on - strand, within AO356_20140at 4508.536 kb on + strandat 4508.537 kb on - strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.556 kb on + strandat 4508.557 kb on - strandat 4508.557 kb on - strandat 4508.557 kb on - strandat 4508.557 kb on - strandat 4508.559 kb on + strandat 4508.559 kb on + strandat 4508.559 kb on + strandat 4508.559 kb on + strandat 4508.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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4,505,975 - AO356_20125 0.78 +0.8
4,506,080 + AO356_20125 0.89 -1.2
4,506,080 + AO356_20125 0.89 -0.7
4,506,080 + AO356_20125 0.89 -0.2
4,506,080 + AO356_20125 0.89 +1.2
4,506,080 + AO356_20125 0.89 +0.2
4,506,080 + AO356_20125 0.89 +1.0
4,506,081 - AO356_20125 0.89 -0.3
4,506,081 - AO356_20125 0.89 +1.2
4,506,081 - AO356_20125 0.89 -0.8
4,506,081 - AO356_20125 0.89 +1.8
4,506,081 - AO356_20125 0.89 -1.0
4,506,081 - AO356_20125 0.89 +0.8
4,506,081 - AO356_20125 0.89 -0.1
4,506,081 - AO356_20125 0.89 -0.8
4,506,081 - AO356_20125 0.89 -0.5
4,506,081 - AO356_20125 0.89 +0.5
4,506,081 - AO356_20125 0.89 +0.8
4,506,082 + AO356_20125 0.90 +0.8
4,506,082 + AO356_20125 0.90 +1.5
4,506,082 + AO356_20125 0.90 -1.1
4,506,082 + AO356_20125 0.90 +0.5
4,506,082 + AO356_20125 0.90 -2.4
4,506,083 - AO356_20125 0.90 +1.0
4,506,083 - AO356_20125 0.90 -0.2
4,506,083 - AO356_20125 0.90 -0.2
4,506,083 - AO356_20125 0.90 +2.1
4,506,348 + AO356_20130 0.27 +2.5
4,506,394 - AO356_20130 0.34 -0.8
4,506,394 - AO356_20130 0.34 +0.5
4,506,394 - AO356_20130 0.34 -1.8
4,506,405 + AO356_20130 0.35 +1.0
4,506,406 - AO356_20130 0.35 +1.2
4,506,455 + AO356_20130 0.43 +0.4
4,506,558 + AO356_20130 0.58 +1.4
4,506,625 + AO356_20130 0.68 +0.2
4,506,732 + AO356_20130 0.85 +0.2
4,506,733 - AO356_20130 0.85 -0.5
4,506,832 - -0.8
4,506,853 + +0.8
4,506,853 + +0.4
4,506,853 + -0.8
4,506,853 + +1.0
4,506,853 + +0.2
4,506,853 + -1.5
4,506,854 - +0.7
4,506,854 - -0.2
4,506,854 - +0.8
4,506,854 - -2.0
4,506,854 - -0.8
4,506,854 - +0.5
4,506,854 - -0.1
4,506,854 - -2.4
4,506,854 - -0.8
4,507,007 + AO356_20135 0.15 +0.2
4,507,007 + AO356_20135 0.15 +0.2
4,507,008 - AO356_20135 0.16 -0.2
4,507,008 - AO356_20135 0.16 +0.2
4,507,008 - AO356_20135 0.16 +1.2
4,507,079 + AO356_20135 0.23 -1.8
4,507,079 + AO356_20135 0.23 -2.1
4,507,141 + AO356_20135 0.29 +0.8
4,507,141 + AO356_20135 0.29 -0.2
4,507,141 + AO356_20135 0.29 -1.8
4,507,142 - AO356_20135 0.29 -0.2
4,507,142 - AO356_20135 0.29 -1.4
4,507,142 - AO356_20135 0.29 +0.2
4,507,244 + AO356_20135 0.39 +0.8
4,507,245 - AO356_20135 0.39 +0.5
4,507,245 - AO356_20135 0.39 -0.5
4,507,282 + AO356_20135 0.43 +0.2
4,507,292 + AO356_20135 0.44 -1.2
4,507,329 - AO356_20135 0.48 -0.2
4,507,329 - AO356_20135 0.48 +0.4
4,507,331 + AO356_20135 0.48 +1.2
4,507,331 + AO356_20135 0.48 -1.2
4,507,332 - AO356_20135 0.48 +1.2
4,507,332 - AO356_20135 0.48 -1.0
4,507,332 - AO356_20135 0.48 +0.8
4,507,358 + AO356_20135 0.51 -0.2
4,507,358 + AO356_20135 0.51 -0.8
4,507,359 - AO356_20135 0.51 +0.5
4,507,359 - AO356_20135 0.51 -0.8
4,507,359 - AO356_20135 0.51 -0.8
4,507,457 + AO356_20135 0.61 -3.1
4,507,458 - AO356_20135 0.61 -1.5
4,507,546 + AO356_20135 0.70 +0.2
4,508,097 + AO356_20140 0.18 +2.4
4,508,098 - AO356_20140 0.18 -0.3
4,508,098 - AO356_20140 0.18 +0.5
4,508,137 + AO356_20140 0.25 -0.5
4,508,138 - AO356_20140 0.25 -0.2
4,508,138 - AO356_20140 0.25 -0.6
4,508,138 - AO356_20140 0.25 +1.1
4,508,158 + AO356_20140 0.29 +0.4
4,508,159 - AO356_20140 0.29 +0.8
4,508,159 - AO356_20140 0.29 +2.2
4,508,192 + AO356_20140 0.35 -2.2
4,508,192 + AO356_20140 0.35 +1.3
4,508,192 + AO356_20140 0.35 +1.2
4,508,193 - AO356_20140 0.35 +1.4
4,508,536 + -2.8
4,508,537 - +0.2
4,508,556 + +1.2
4,508,556 + -0.8
4,508,556 + -0.8
4,508,556 + -2.0
4,508,556 + +0.2
4,508,556 + +0.2
4,508,557 - -0.8
4,508,557 - -0.8
4,508,557 - -0.2
4,508,557 - -0.4
4,508,559 + +1.2
4,508,559 + -1.8
4,508,559 + +0.6
4,508,559 + +0.8
4,508,560 - +0.3

Or see this region's nucleotide sequence