Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19345

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19340 and AO356_19345 are separated by 319 nucleotidesAO356_19345 and AO356_19350 overlap by 1 nucleotidesAO356_19350 and AO356_19355 are separated by 124 nucleotides AO356_19340: AO356_19340 - NAD(P)H-quinone oxidoreductase, at 4,343,002 to 4,343,964 _19340 AO356_19345: AO356_19345 - hypothetical protein, at 4,344,284 to 4,344,919 _19345 AO356_19350: AO356_19350 - hypothetical protein, at 4,344,919 to 4,345,707 _19350 AO356_19355: AO356_19355 - HAD family hydrolase, at 4,345,832 to 4,346,485 _19355 Position (kb) 4344 4345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4343.356 kb on + strand, within AO356_19340at 4343.356 kb on + strand, within AO356_19340at 4343.356 kb on + strand, within AO356_19340at 4343.521 kb on + strand, within AO356_19340at 4343.521 kb on + strand, within AO356_19340at 4343.522 kb on - strand, within AO356_19340at 4343.522 kb on - strand, within AO356_19340at 4343.522 kb on - strand, within AO356_19340at 4343.556 kb on - strand, within AO356_19340at 4343.630 kb on - strand, within AO356_19340at 4343.740 kb on - strand, within AO356_19340at 4344.076 kb on + strandat 4344.076 kb on + strandat 4344.076 kb on + strandat 4344.076 kb on + strandat 4344.077 kb on - strandat 4344.077 kb on - strandat 4344.108 kb on + strandat 4344.221 kb on + strandat 4344.221 kb on + strandat 4344.222 kb on - strandat 4344.222 kb on - strandat 4344.222 kb on - strandat 4344.222 kb on - strandat 4344.337 kb on + strandat 4344.337 kb on + strandat 4344.338 kb on - strandat 4344.338 kb on - strandat 4344.338 kb on - strandat 4344.423 kb on - strand, within AO356_19345at 4344.827 kb on + strand, within AO356_19345at 4344.828 kb on - strand, within AO356_19345at 4344.852 kb on + strand, within AO356_19345at 4344.852 kb on + strand, within AO356_19345at 4344.852 kb on + strand, within AO356_19345at 4344.852 kb on + strand, within AO356_19345at 4344.853 kb on - strand, within AO356_19345at 4344.853 kb on - strand, within AO356_19345at 4344.872 kb on - strandat 4344.872 kb on - strandat 4344.888 kb on + strandat 4344.888 kb on + strandat 4344.888 kb on + strandat 4344.888 kb on + strandat 4344.889 kb on - strandat 4344.889 kb on - strandat 4344.909 kb on + strandat 4344.909 kb on + strandat 4344.909 kb on + strandat 4344.910 kb on - strandat 4344.910 kb on - strandat 4344.910 kb on - strandat 4345.189 kb on + strand, within AO356_19350at 4345.190 kb on - strand, within AO356_19350at 4345.261 kb on + strand, within AO356_19350at 4345.262 kb on - strand, within AO356_19350at 4345.262 kb on - strand, within AO356_19350at 4345.262 kb on - strand, within AO356_19350at 4345.359 kb on + strand, within AO356_19350at 4345.399 kb on + strand, within AO356_19350at 4345.400 kb on - strand, within AO356_19350at 4345.468 kb on + strand, within AO356_19350at 4345.469 kb on - strand, within AO356_19350at 4345.522 kb on + strand, within AO356_19350at 4345.522 kb on + strand, within AO356_19350at 4345.523 kb on - strand, within AO356_19350at 4345.705 kb on + strandat 4345.720 kb on + strandat 4345.720 kb on + strandat 4345.720 kb on + strandat 4345.720 kb on + strandat 4345.721 kb on - strandat 4345.772 kb on + strandat 4345.843 kb on + strandat 4345.843 kb on + strandat 4345.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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4,343,356 + AO356_19340 0.37 -0.1
4,343,356 + AO356_19340 0.37 +0.3
4,343,356 + AO356_19340 0.37 -0.7
4,343,521 + AO356_19340 0.54 +0.9
4,343,521 + AO356_19340 0.54 -0.7
4,343,522 - AO356_19340 0.54 +0.3
4,343,522 - AO356_19340 0.54 -0.7
4,343,522 - AO356_19340 0.54 +1.7
4,343,556 - AO356_19340 0.58 +0.3
4,343,630 - AO356_19340 0.65 +2.1
4,343,740 - AO356_19340 0.77 -0.7
4,344,076 + +1.6
4,344,076 + -0.1
4,344,076 + +1.3
4,344,076 + -0.7
4,344,077 - -0.7
4,344,077 - +0.3
4,344,108 + -3.0
4,344,221 + +0.1
4,344,221 + -0.2
4,344,222 - -0.7
4,344,222 - +0.3
4,344,222 - +0.5
4,344,222 - +1.3
4,344,337 + -0.7
4,344,337 + -0.1
4,344,338 - +0.3
4,344,338 - +0.3
4,344,338 - -0.7
4,344,423 - AO356_19345 0.22 +0.5
4,344,827 + AO356_19345 0.85 -0.7
4,344,828 - AO356_19345 0.86 -0.7
4,344,852 + AO356_19345 0.89 +2.3
4,344,852 + AO356_19345 0.89 +0.5
4,344,852 + AO356_19345 0.89 +1.3
4,344,852 + AO356_19345 0.89 -0.7
4,344,853 - AO356_19345 0.89 +1.3
4,344,853 - AO356_19345 0.89 -1.4
4,344,872 - -0.1
4,344,872 - -0.7
4,344,888 + +2.1
4,344,888 + +1.3
4,344,888 + +1.6
4,344,888 + -0.7
4,344,889 - -1.3
4,344,889 - -1.7
4,344,909 + +0.9
4,344,909 + +1.9
4,344,909 + +0.3
4,344,910 - -1.0
4,344,910 - -0.7
4,344,910 - +0.3
4,345,189 + AO356_19350 0.34 +0.9
4,345,190 - AO356_19350 0.34 +0.9
4,345,261 + AO356_19350 0.43 +0.9
4,345,262 - AO356_19350 0.43 -0.7
4,345,262 - AO356_19350 0.43 +0.3
4,345,262 - AO356_19350 0.43 -0.1
4,345,359 + AO356_19350 0.56 +0.2
4,345,399 + AO356_19350 0.61 +0.5
4,345,400 - AO356_19350 0.61 +0.3
4,345,468 + AO356_19350 0.70 -0.2
4,345,469 - AO356_19350 0.70 -0.7
4,345,522 + AO356_19350 0.76 -0.1
4,345,522 + AO356_19350 0.76 +0.3
4,345,523 - AO356_19350 0.77 -0.7
4,345,705 + +0.3
4,345,720 + +2.3
4,345,720 + +0.3
4,345,720 + +0.9
4,345,720 + -0.7
4,345,721 - +0.9
4,345,772 + -0.3
4,345,843 + +0.7
4,345,843 + +1.3
4,345,843 + +0.3

Or see this region's nucleotide sequence