Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18845

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18840 and AO356_18845 are separated by 172 nucleotidesAO356_18845 and AO356_18850 are separated by 118 nucleotidesAO356_18850 and AO356_18855 are separated by 63 nucleotides AO356_18840: AO356_18840 - hypothetical protein, at 4,237,979 to 4,238,875 _18840 AO356_18845: AO356_18845 - hypothetical protein, at 4,239,048 to 4,239,395 _18845 AO356_18850: AO356_18850 - hypothetical protein, at 4,239,514 to 4,239,870 _18850 AO356_18855: AO356_18855 - hypothetical protein, at 4,239,934 to 4,240,542 _18855 Position (kb) 4239 4240Strain fitness (log2 ratio) -2 -1 0 1 2at 4238.093 kb on + strand, within AO356_18840at 4238.105 kb on + strand, within AO356_18840at 4238.105 kb on + strand, within AO356_18840at 4238.105 kb on + strand, within AO356_18840at 4238.105 kb on + strand, within AO356_18840at 4238.106 kb on - strand, within AO356_18840at 4238.117 kb on - strand, within AO356_18840at 4238.142 kb on + strand, within AO356_18840at 4238.142 kb on + strand, within AO356_18840at 4238.143 kb on - strand, within AO356_18840at 4238.189 kb on + strand, within AO356_18840at 4238.291 kb on + strand, within AO356_18840at 4238.291 kb on + strand, within AO356_18840at 4238.291 kb on + strand, within AO356_18840at 4238.291 kb on + strand, within AO356_18840at 4238.292 kb on - strand, within AO356_18840at 4238.300 kb on + strand, within AO356_18840at 4238.300 kb on + strand, within AO356_18840at 4238.301 kb on - strand, within AO356_18840at 4238.301 kb on - strand, within AO356_18840at 4238.301 kb on - strand, within AO356_18840at 4238.301 kb on - strand, within AO356_18840at 4238.301 kb on - strand, within AO356_18840at 4238.301 kb on - strand, within AO356_18840at 4238.301 kb on - strand, within AO356_18840at 4238.444 kb on - strand, within AO356_18840at 4238.448 kb on + strand, within AO356_18840at 4238.448 kb on + strand, within AO356_18840at 4238.449 kb on - strand, within AO356_18840at 4238.478 kb on - strand, within AO356_18840at 4238.555 kb on + strand, within AO356_18840at 4238.556 kb on - strand, within AO356_18840at 4238.556 kb on - strand, within AO356_18840at 4238.565 kb on + strand, within AO356_18840at 4238.565 kb on + strand, within AO356_18840at 4238.565 kb on + strand, within AO356_18840at 4238.565 kb on + strand, within AO356_18840at 4238.565 kb on + strand, within AO356_18840at 4238.565 kb on + strand, within AO356_18840at 4238.566 kb on - strand, within AO356_18840at 4238.566 kb on - strand, within AO356_18840at 4238.566 kb on - strand, within AO356_18840at 4238.566 kb on - strand, within AO356_18840at 4238.566 kb on - strand, within AO356_18840at 4238.566 kb on - strand, within AO356_18840at 4238.566 kb on - strand, within AO356_18840at 4238.569 kb on + strand, within AO356_18840at 4238.569 kb on + strand, within AO356_18840at 4238.569 kb on + strand, within AO356_18840at 4238.569 kb on + strand, within AO356_18840at 4238.569 kb on + strand, within AO356_18840at 4238.569 kb on + strand, within AO356_18840at 4238.569 kb on + strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.570 kb on - strand, within AO356_18840at 4238.609 kb on + strand, within AO356_18840at 4238.609 kb on + strand, within AO356_18840at 4238.609 kb on + strand, within AO356_18840at 4238.610 kb on - strand, within AO356_18840at 4238.610 kb on - strand, within AO356_18840at 4238.610 kb on - strand, within AO356_18840at 4238.610 kb on - strand, within AO356_18840at 4238.621 kb on + strand, within AO356_18840at 4238.622 kb on - strand, within AO356_18840at 4238.627 kb on + strand, within AO356_18840at 4238.627 kb on + strand, within AO356_18840at 4238.628 kb on - strand, within AO356_18840at 4238.633 kb on + strand, within AO356_18840at 4238.633 kb on + strand, within AO356_18840at 4238.633 kb on + strand, within AO356_18840at 4238.633 kb on + strand, within AO356_18840at 4238.633 kb on + strand, within AO356_18840at 4238.634 kb on - strand, within AO356_18840at 4238.634 kb on - strand, within AO356_18840at 4238.634 kb on - strand, within AO356_18840at 4238.634 kb on - strand, within AO356_18840at 4238.634 kb on - strand, within AO356_18840at 4238.634 kb on - strand, within AO356_18840at 4238.634 kb on - strand, within AO356_18840at 4238.663 kb on + strand, within AO356_18840at 4238.664 kb on - strand, within AO356_18840at 4238.664 kb on - strand, within AO356_18840at 4238.664 kb on - strand, within AO356_18840at 4238.714 kb on - strand, within AO356_18840at 4238.760 kb on + strand, within AO356_18840at 4238.761 kb on - strand, within AO356_18840at 4238.761 kb on - strand, within AO356_18840at 4238.782 kb on + strand, within AO356_18840at 4238.783 kb on - strand, within AO356_18840at 4238.815 kb on + strandat 4238.815 kb on + strandat 4238.815 kb on + strandat 4238.836 kb on + strandat 4238.836 kb on + strandat 4238.836 kb on + strandat 4238.836 kb on + strandat 4238.837 kb on - strandat 4238.892 kb on + strandat 4238.893 kb on - strandat 4238.912 kb on + strandat 4238.912 kb on + strandat 4238.912 kb on + strandat 4238.913 kb on - strandat 4238.913 kb on - strandat 4238.913 kb on - strandat 4238.980 kb on - strandat 4238.983 kb on + strandat 4238.983 kb on + strandat 4239.128 kb on + strand, within AO356_18845at 4239.165 kb on + strand, within AO356_18845at 4239.247 kb on + strand, within AO356_18845at 4239.270 kb on + strand, within AO356_18845at 4239.271 kb on - strand, within AO356_18845at 4239.374 kb on + strandat 4239.714 kb on + strand, within AO356_18850at 4239.714 kb on + strand, within AO356_18850at 4239.714 kb on + strand, within AO356_18850at 4239.714 kb on + strand, within AO356_18850at 4239.715 kb on - strand, within AO356_18850at 4239.715 kb on - strand, within AO356_18850at 4239.715 kb on - strand, within AO356_18850at 4239.796 kb on - strand, within AO356_18850at 4239.917 kb on + strandat 4239.985 kb on + strandat 4240.037 kb on + strand, within AO356_18855

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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4,238,093 + AO356_18840 0.13 +1.0
4,238,105 + AO356_18840 0.14 +1.7
4,238,105 + AO356_18840 0.14 +1.0
4,238,105 + AO356_18840 0.14 +1.4
4,238,105 + AO356_18840 0.14 -0.2
4,238,106 - AO356_18840 0.14 +0.4
4,238,117 - AO356_18840 0.15 -0.6
4,238,142 + AO356_18840 0.18 -0.6
4,238,142 + AO356_18840 0.18 +0.1
4,238,143 - AO356_18840 0.18 -0.2
4,238,189 + AO356_18840 0.23 +0.2
4,238,291 + AO356_18840 0.35 +1.3
4,238,291 + AO356_18840 0.35 +0.1
4,238,291 + AO356_18840 0.35 -0.6
4,238,291 + AO356_18840 0.35 -2.6
4,238,292 - AO356_18840 0.35 -1.6
4,238,300 + AO356_18840 0.36 +2.4
4,238,300 + AO356_18840 0.36 -1.0
4,238,301 - AO356_18840 0.36 -0.6
4,238,301 - AO356_18840 0.36 +1.1
4,238,301 - AO356_18840 0.36 +0.6
4,238,301 - AO356_18840 0.36 -0.8
4,238,301 - AO356_18840 0.36 -0.3
4,238,301 - AO356_18840 0.36 -0.9
4,238,301 - AO356_18840 0.36 +1.2
4,238,444 - AO356_18840 0.52 +1.0
4,238,448 + AO356_18840 0.52 +0.1
4,238,448 + AO356_18840 0.52 +0.8
4,238,449 - AO356_18840 0.52 +1.0
4,238,478 - AO356_18840 0.56 +0.4
4,238,555 + AO356_18840 0.64 -0.3
4,238,556 - AO356_18840 0.64 -0.6
4,238,556 - AO356_18840 0.64 +1.4
4,238,565 + AO356_18840 0.65 +0.7
4,238,565 + AO356_18840 0.65 -0.2
4,238,565 + AO356_18840 0.65 -0.6
4,238,565 + AO356_18840 0.65 +0.6
4,238,565 + AO356_18840 0.65 -0.6
4,238,565 + AO356_18840 0.65 +1.4
4,238,566 - AO356_18840 0.65 -0.3
4,238,566 - AO356_18840 0.65 +0.6
4,238,566 - AO356_18840 0.65 -2.2
4,238,566 - AO356_18840 0.65 +0.6
4,238,566 - AO356_18840 0.65 -1.4
4,238,566 - AO356_18840 0.65 -0.6
4,238,566 - AO356_18840 0.65 -1.2
4,238,569 + AO356_18840 0.66 -0.9
4,238,569 + AO356_18840 0.66 -0.0
4,238,569 + AO356_18840 0.66 -0.6
4,238,569 + AO356_18840 0.66 -1.6
4,238,569 + AO356_18840 0.66 -0.2
4,238,569 + AO356_18840 0.66 -0.4
4,238,569 + AO356_18840 0.66 +1.4
4,238,570 - AO356_18840 0.66 -0.6
4,238,570 - AO356_18840 0.66 -0.3
4,238,570 - AO356_18840 0.66 +0.1
4,238,570 - AO356_18840 0.66 -1.3
4,238,570 - AO356_18840 0.66 -0.8
4,238,570 - AO356_18840 0.66 -0.0
4,238,570 - AO356_18840 0.66 +2.4
4,238,570 - AO356_18840 0.66 -0.3
4,238,609 + AO356_18840 0.70 +0.5
4,238,609 + AO356_18840 0.70 +0.4
4,238,609 + AO356_18840 0.70 -0.6
4,238,610 - AO356_18840 0.70 -0.9
4,238,610 - AO356_18840 0.70 -0.9
4,238,610 - AO356_18840 0.70 +0.4
4,238,610 - AO356_18840 0.70 -0.6
4,238,621 + AO356_18840 0.72 -1.2
4,238,622 - AO356_18840 0.72 +1.2
4,238,627 + AO356_18840 0.72 +0.7
4,238,627 + AO356_18840 0.72 -1.3
4,238,628 - AO356_18840 0.72 -2.2
4,238,633 + AO356_18840 0.73 -1.0
4,238,633 + AO356_18840 0.73 -0.0
4,238,633 + AO356_18840 0.73 -0.6
4,238,633 + AO356_18840 0.73 -1.6
4,238,633 + AO356_18840 0.73 -0.3
4,238,634 - AO356_18840 0.73 -0.9
4,238,634 - AO356_18840 0.73 -2.0
4,238,634 - AO356_18840 0.73 -0.0
4,238,634 - AO356_18840 0.73 +0.4
4,238,634 - AO356_18840 0.73 +0.7
4,238,634 - AO356_18840 0.73 -0.6
4,238,634 - AO356_18840 0.73 -1.6
4,238,663 + AO356_18840 0.76 +1.4
4,238,664 - AO356_18840 0.76 -1.2
4,238,664 - AO356_18840 0.76 -1.2
4,238,664 - AO356_18840 0.76 +1.4
4,238,714 - AO356_18840 0.82 -0.6
4,238,760 + AO356_18840 0.87 -1.6
4,238,761 - AO356_18840 0.87 -0.3
4,238,761 - AO356_18840 0.87 -0.0
4,238,782 + AO356_18840 0.90 +0.7
4,238,783 - AO356_18840 0.90 +0.4
4,238,815 + -0.4
4,238,815 + -0.6
4,238,815 + +0.6
4,238,836 + -2.2
4,238,836 + +0.7
4,238,836 + -0.6
4,238,836 + +2.0
4,238,837 - -0.6
4,238,892 + +0.0
4,238,893 - -0.6
4,238,912 + -0.8
4,238,912 + -2.2
4,238,912 + +2.0
4,238,913 - -0.0
4,238,913 - -0.8
4,238,913 - -0.0
4,238,980 - -0.8
4,238,983 + +0.6
4,238,983 + +0.4
4,239,128 + AO356_18845 0.23 -0.2
4,239,165 + AO356_18845 0.34 -1.6
4,239,247 + AO356_18845 0.57 -1.3
4,239,270 + AO356_18845 0.64 +0.2
4,239,271 - AO356_18845 0.64 -0.6
4,239,374 + +0.2
4,239,714 + AO356_18850 0.56 -0.4
4,239,714 + AO356_18850 0.56 +0.4
4,239,714 + AO356_18850 0.56 -1.8
4,239,714 + AO356_18850 0.56 -0.0
4,239,715 - AO356_18850 0.56 -1.6
4,239,715 - AO356_18850 0.56 +0.4
4,239,715 - AO356_18850 0.56 -0.4
4,239,796 - AO356_18850 0.79 -1.0
4,239,917 + +0.7
4,239,985 + -0.6
4,240,037 + AO356_18855 0.17 -1.6

Or see this region's nucleotide sequence