Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16720

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16715 and AO356_16720 are separated by 186 nucleotidesAO356_16720 and AO356_16725 are separated by 294 nucleotidesAO356_16725 and AO356_16730 overlap by 8 nucleotides AO356_16715: AO356_16715 - thioredoxin reductase, at 3,770,167 to 3,771,129 _16715 AO356_16720: AO356_16720 - 4-aminobutyrate aminotransferase, at 3,771,316 to 3,772,566 _16720 AO356_16725: AO356_16725 - HopJ type III effector protein, at 3,772,861 to 3,773,199 _16725 AO356_16730: AO356_16730 - cell division protein DedD, at 3,773,192 to 3,773,488 _16730 Position (kb) 3771 3772 3773Strain fitness (log2 ratio) -2 -1 0 1 2at 3771.169 kb on - strandat 3771.179 kb on + strandat 3771.180 kb on - strandat 3771.180 kb on - strandat 3771.228 kb on + strandat 3771.228 kb on + strandat 3771.228 kb on + strandat 3771.228 kb on + strandat 3771.229 kb on - strandat 3771.557 kb on + strand, within AO356_16720at 3771.557 kb on + strand, within AO356_16720at 3771.557 kb on + strand, within AO356_16720at 3771.558 kb on - strand, within AO356_16720at 3771.558 kb on - strand, within AO356_16720at 3771.565 kb on + strand, within AO356_16720at 3771.701 kb on + strand, within AO356_16720at 3771.701 kb on + strand, within AO356_16720at 3771.702 kb on - strand, within AO356_16720at 3771.702 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.130 kb on + strand, within AO356_16720at 3772.131 kb on - strand, within AO356_16720at 3772.131 kb on - strand, within AO356_16720at 3772.131 kb on - strand, within AO356_16720at 3772.131 kb on - strand, within AO356_16720at 3772.131 kb on - strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.337 kb on + strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.338 kb on - strand, within AO356_16720at 3772.367 kb on + strand, within AO356_16720at 3772.367 kb on + strand, within AO356_16720at 3772.466 kb on + strandat 3772.467 kb on - strandat 3772.467 kb on - strandat 3772.467 kb on - strandat 3772.467 kb on - strandat 3772.604 kb on + strandat 3772.604 kb on + strandat 3772.605 kb on - strandat 3772.605 kb on - strandat 3772.605 kb on - strandat 3772.637 kb on + strandat 3772.637 kb on + strandat 3772.638 kb on - strandat 3772.638 kb on - strandat 3772.657 kb on + strandat 3772.687 kb on - strandat 3772.852 kb on + strandat 3772.929 kb on + strand, within AO356_16725at 3772.929 kb on + strand, within AO356_16725at 3772.930 kb on - strand, within AO356_16725at 3773.109 kb on - strand, within AO356_16725at 3773.184 kb on + strandat 3773.253 kb on + strand, within AO356_16730at 3773.254 kb on - strand, within AO356_16730at 3773.254 kb on - strand, within AO356_16730at 3773.274 kb on + strand, within AO356_16730at 3773.286 kb on + strand, within AO356_16730at 3773.286 kb on + strand, within AO356_16730at 3773.349 kb on + strand, within AO356_16730at 3773.349 kb on + strand, within AO356_16730at 3773.349 kb on + strand, within AO356_16730at 3773.349 kb on + strand, within AO356_16730at 3773.349 kb on + strand, within AO356_16730at 3773.349 kb on + strand, within AO356_16730at 3773.350 kb on - strand, within AO356_16730at 3773.350 kb on - strand, within AO356_16730at 3773.543 kb on + strandat 3773.565 kb on + strandat 3773.565 kb on + strandat 3773.565 kb on + strandat 3773.565 kb on + strandat 3773.566 kb on - strandat 3773.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,771,169 - -1.0
3,771,179 + +1.2
3,771,180 - -0.9
3,771,180 - +1.0
3,771,228 + +0.6
3,771,228 + -2.0
3,771,228 + -0.4
3,771,228 + -0.2
3,771,229 - +0.1
3,771,557 + AO356_16720 0.19 -1.4
3,771,557 + AO356_16720 0.19 +2.2
3,771,557 + AO356_16720 0.19 +0.5
3,771,558 - AO356_16720 0.19 +2.2
3,771,558 - AO356_16720 0.19 +2.0
3,771,565 + AO356_16720 0.20 +0.2
3,771,701 + AO356_16720 0.31 +1.6
3,771,701 + AO356_16720 0.31 -0.4
3,771,702 - AO356_16720 0.31 -1.4
3,771,702 - AO356_16720 0.31 +1.4
3,772,095 - AO356_16720 0.62 +0.6
3,772,095 - AO356_16720 0.62 -1.4
3,772,095 - AO356_16720 0.62 +2.3
3,772,095 - AO356_16720 0.62 +0.6
3,772,095 - AO356_16720 0.62 +1.4
3,772,095 - AO356_16720 0.62 +2.2
3,772,130 + AO356_16720 0.65 -0.8
3,772,131 - AO356_16720 0.65 -1.4
3,772,131 - AO356_16720 0.65 +0.6
3,772,131 - AO356_16720 0.65 +2.2
3,772,131 - AO356_16720 0.65 +0.2
3,772,131 - AO356_16720 0.65 -0.4
3,772,337 + AO356_16720 0.82 -0.6
3,772,337 + AO356_16720 0.82 +0.3
3,772,337 + AO356_16720 0.82 +1.2
3,772,337 + AO356_16720 0.82 -0.8
3,772,337 + AO356_16720 0.82 -0.1
3,772,337 + AO356_16720 0.82 -0.4
3,772,337 + AO356_16720 0.82 +2.2
3,772,337 + AO356_16720 0.82 +1.6
3,772,338 - AO356_16720 0.82 +0.6
3,772,338 - AO356_16720 0.82 +0.6
3,772,338 - AO356_16720 0.82 +1.4
3,772,338 - AO356_16720 0.82 +2.4
3,772,338 - AO356_16720 0.82 +0.2
3,772,338 - AO356_16720 0.82 +0.6
3,772,338 - AO356_16720 0.82 +1.9
3,772,338 - AO356_16720 0.82 +1.6
3,772,338 - AO356_16720 0.82 +0.1
3,772,338 - AO356_16720 0.82 -1.4
3,772,338 - AO356_16720 0.82 -0.4
3,772,367 + AO356_16720 0.84 +0.3
3,772,367 + AO356_16720 0.84 -1.7
3,772,466 + -1.4
3,772,467 - +0.6
3,772,467 - +0.6
3,772,467 - +0.6
3,772,467 - -1.0
3,772,604 + +0.9
3,772,604 + +0.7
3,772,605 - +0.7
3,772,605 - +0.2
3,772,605 - +1.6
3,772,637 + +0.9
3,772,637 + +0.7
3,772,638 - -0.4
3,772,638 - -0.4
3,772,657 + -0.9
3,772,687 - -0.4
3,772,852 + -1.4
3,772,929 + AO356_16725 0.20 -1.0
3,772,929 + AO356_16725 0.20 -0.6
3,772,930 - AO356_16725 0.20 -0.4
3,773,109 - AO356_16725 0.73 -0.4
3,773,184 + -0.4
3,773,253 + AO356_16730 0.21 +0.2
3,773,254 - AO356_16730 0.21 -0.2
3,773,254 - AO356_16730 0.21 -0.4
3,773,274 + AO356_16730 0.28 -0.2
3,773,286 + AO356_16730 0.32 -1.4
3,773,286 + AO356_16730 0.32 -1.4
3,773,349 + AO356_16730 0.53 +0.3
3,773,349 + AO356_16730 0.53 -0.7
3,773,349 + AO356_16730 0.53 -2.0
3,773,349 + AO356_16730 0.53 +0.2
3,773,349 + AO356_16730 0.53 -0.0
3,773,349 + AO356_16730 0.53 +0.7
3,773,350 - AO356_16730 0.53 -0.8
3,773,350 - AO356_16730 0.53 -0.4
3,773,543 + +1.4
3,773,565 + -0.9
3,773,565 + +0.6
3,773,565 + +1.4
3,773,565 + +1.2
3,773,566 - -1.0
3,773,566 - -0.4

Or see this region's nucleotide sequence