Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16410

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_16405 and AO356_16410 are separated by 497 nucleotidesAO356_16410 and AO356_16415 are separated by 51 nucleotides AO356_16405: AO356_16405 - hypothetical protein, at 3,706,363 to 3,707,424 _16405 AO356_16410: AO356_16410 - chemotaxis protein, at 3,707,922 to 3,710,108 _16410 AO356_16415: AO356_16415 - protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO, at 3,710,160 to 3,712,385 _16415 Position (kb) 3707 3708 3709 3710 3711Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3706.987 kb on + strand, within AO356_16405at 3707.164 kb on - strand, within AO356_16405at 3707.326 kb on - strandat 3707.413 kb on + strandat 3707.413 kb on + strandat 3707.414 kb on - strandat 3707.495 kb on - strandat 3707.505 kb on + strandat 3707.516 kb on - strandat 3707.524 kb on + strandat 3707.556 kb on + strandat 3707.601 kb on - strandat 3707.622 kb on + strandat 3707.657 kb on + strandat 3707.658 kb on - strandat 3707.666 kb on + strandat 3707.667 kb on - strandat 3707.681 kb on + strandat 3707.682 kb on - strandat 3707.682 kb on - strandat 3707.682 kb on - strandat 3707.706 kb on + strandat 3707.706 kb on + strandat 3707.707 kb on - strandat 3707.712 kb on + strandat 3707.713 kb on - strandat 3707.713 kb on - strandat 3707.713 kb on - strandat 3707.731 kb on + strandat 3707.732 kb on - strandat 3707.773 kb on - strandat 3707.773 kb on - strandat 3707.774 kb on + strandat 3707.870 kb on - strandat 3707.870 kb on - strandat 3707.897 kb on + strandat 3707.901 kb on + strandat 3707.902 kb on - strandat 3707.921 kb on + strandat 3707.922 kb on - strandat 3708.004 kb on - strandat 3708.036 kb on + strandat 3708.036 kb on + strandat 3708.036 kb on + strandat 3708.036 kb on + strandat 3708.036 kb on + strandat 3708.036 kb on + strandat 3708.037 kb on - strandat 3708.037 kb on - strandat 3708.037 kb on - strandat 3708.037 kb on - strandat 3708.037 kb on - strandat 3708.235 kb on + strand, within AO356_16410at 3708.236 kb on - strand, within AO356_16410at 3708.236 kb on - strand, within AO356_16410at 3708.236 kb on - strand, within AO356_16410at 3708.279 kb on + strand, within AO356_16410at 3708.279 kb on + strand, within AO356_16410at 3708.279 kb on + strand, within AO356_16410at 3708.279 kb on + strand, within AO356_16410at 3708.279 kb on + strand, within AO356_16410at 3708.279 kb on + strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.280 kb on - strand, within AO356_16410at 3708.347 kb on + strand, within AO356_16410at 3708.347 kb on + strand, within AO356_16410at 3708.347 kb on + strand, within AO356_16410at 3708.348 kb on - strand, within AO356_16410at 3708.426 kb on + strand, within AO356_16410at 3708.427 kb on - strand, within AO356_16410at 3708.427 kb on - strand, within AO356_16410at 3708.427 kb on - strand, within AO356_16410at 3708.427 kb on - strand, within AO356_16410at 3708.474 kb on + strand, within AO356_16410at 3708.525 kb on + strand, within AO356_16410at 3708.525 kb on + strand, within AO356_16410at 3708.525 kb on + strand, within AO356_16410at 3708.526 kb on - strand, within AO356_16410at 3708.526 kb on - strand, within AO356_16410at 3708.526 kb on - strand, within AO356_16410at 3708.526 kb on - strand, within AO356_16410at 3708.526 kb on - strand, within AO356_16410at 3708.526 kb on - strand, within AO356_16410at 3708.526 kb on - strand, within AO356_16410at 3708.594 kb on + strand, within AO356_16410at 3708.594 kb on + strand, within AO356_16410at 3708.594 kb on + strand, within AO356_16410at 3708.595 kb on - strand, within AO356_16410at 3708.595 kb on - strand, within AO356_16410at 3708.629 kb on + strand, within AO356_16410at 3708.666 kb on + strand, within AO356_16410at 3708.667 kb on - strand, within AO356_16410at 3708.667 kb on - strand, within AO356_16410at 3708.699 kb on - strand, within AO356_16410at 3708.846 kb on - strand, within AO356_16410at 3709.220 kb on + strand, within AO356_16410at 3709.220 kb on + strand, within AO356_16410at 3709.221 kb on - strand, within AO356_16410at 3709.221 kb on - strand, within AO356_16410at 3709.272 kb on - strand, within AO356_16410at 3709.272 kb on - strand, within AO356_16410at 3709.545 kb on - strand, within AO356_16410at 3709.899 kb on + strandat 3709.899 kb on + strandat 3709.899 kb on + strandat 3709.900 kb on - strandat 3710.086 kb on + strandat 3710.087 kb on - strandat 3710.160 kb on - strandat 3710.219 kb on + strandat 3710.219 kb on + strandat 3710.220 kb on - strandat 3710.220 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.241 kb on - strandat 3710.283 kb on + strandat 3710.283 kb on + strandat 3710.284 kb on - strandat 3710.284 kb on - strandat 3710.284 kb on - strandat 3710.316 kb on + strandat 3710.317 kb on - strandat 3710.317 kb on - strandat 3710.331 kb on + strandat 3710.348 kb on + strandat 3710.348 kb on + strandat 3710.349 kb on - strandat 3710.349 kb on - strandat 3710.384 kb on + strand, within AO356_16415at 3710.384 kb on + strand, within AO356_16415at 3710.384 kb on + strand, within AO356_16415at 3710.384 kb on + strand, within AO356_16415at 3710.385 kb on - strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.610 kb on + strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.611 kb on - strand, within AO356_16415at 3710.612 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.654 kb on + strand, within AO356_16415at 3710.655 kb on - strand, within AO356_16415at 3710.655 kb on - strand, within AO356_16415at 3710.711 kb on + strand, within AO356_16415at 3710.711 kb on + strand, within AO356_16415at 3710.712 kb on - strand, within AO356_16415at 3710.738 kb on + strand, within AO356_16415at 3710.738 kb on + strand, within AO356_16415at 3710.738 kb on + strand, within AO356_16415at 3710.739 kb on - strand, within AO356_16415at 3710.739 kb on - strand, within AO356_16415at 3710.739 kb on - strand, within AO356_16415at 3710.768 kb on + strand, within AO356_16415at 3710.769 kb on - strand, within AO356_16415at 3710.769 kb on - strand, within AO356_16415at 3710.769 kb on - strand, within AO356_16415at 3710.854 kb on - strand, within AO356_16415at 3710.854 kb on - strand, within AO356_16415at 3710.937 kb on - strand, within AO356_16415at 3710.970 kb on + strand, within AO356_16415at 3710.970 kb on + strand, within AO356_16415at 3710.971 kb on - strand, within AO356_16415at 3710.985 kb on + strand, within AO356_16415at 3710.985 kb on + strand, within AO356_16415at 3710.985 kb on + strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3710.986 kb on - strand, within AO356_16415at 3711.069 kb on + strand, within AO356_16415at 3711.069 kb on + strand, within AO356_16415at 3711.070 kb on - strand, within AO356_16415at 3711.099 kb on + strand, within AO356_16415at 3711.099 kb on + strand, within AO356_16415at 3711.100 kb on - strand, within AO356_16415at 3711.100 kb on - strand, within AO356_16415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
remove
3,706,987 + AO356_16405 0.59 -0.4
3,707,164 - AO356_16405 0.75 +0.7
3,707,326 - +2.1
3,707,413 + -1.4
3,707,413 + +1.6
3,707,414 - -0.4
3,707,495 - -0.4
3,707,505 + +0.6
3,707,516 - -0.0
3,707,524 + +1.9
3,707,556 + +0.6
3,707,601 - +0.6
3,707,622 + +1.9
3,707,657 + -0.4
3,707,658 - -1.2
3,707,666 + +1.2
3,707,667 - +2.8
3,707,681 + -0.4
3,707,682 - +1.2
3,707,682 - -0.4
3,707,682 - +0.3
3,707,706 + +0.6
3,707,706 + +0.2
3,707,707 - -0.6
3,707,712 + +0.6
3,707,713 - -1.4
3,707,713 - +1.2
3,707,713 - -0.4
3,707,731 + -0.4
3,707,732 - +0.4
3,707,773 - +0.2
3,707,773 - -0.8
3,707,774 + -1.2
3,707,870 - -0.4
3,707,870 - +0.6
3,707,897 + -0.4
3,707,901 + +1.2
3,707,902 - -0.0
3,707,921 + +1.4
3,707,922 - -0.8
3,708,004 - -1.0
3,708,036 + -0.4
3,708,036 + +1.2
3,708,036 + +1.6
3,708,036 + +1.2
3,708,036 + -0.4
3,708,036 + +0.6
3,708,037 - +0.8
3,708,037 - -0.8
3,708,037 - +0.6
3,708,037 - -0.7
3,708,037 - +1.6
3,708,235 + AO356_16410 0.14 -2.0
3,708,236 - AO356_16410 0.14 -0.1
3,708,236 - AO356_16410 0.14 +1.4
3,708,236 - AO356_16410 0.14 +0.2
3,708,279 + AO356_16410 0.16 -0.4
3,708,279 + AO356_16410 0.16 -0.0
3,708,279 + AO356_16410 0.16 -1.4
3,708,279 + AO356_16410 0.16 -2.7
3,708,279 + AO356_16410 0.16 -1.4
3,708,279 + AO356_16410 0.16 +1.2
3,708,280 - AO356_16410 0.16 +0.0
3,708,280 - AO356_16410 0.16 +0.8
3,708,280 - AO356_16410 0.16 -0.4
3,708,280 - AO356_16410 0.16 -4.1
3,708,280 - AO356_16410 0.16 +0.6
3,708,280 - AO356_16410 0.16 +0.2
3,708,280 - AO356_16410 0.16 -0.4
3,708,280 - AO356_16410 0.16 -0.4
3,708,280 - AO356_16410 0.16 -0.1
3,708,280 - AO356_16410 0.16 +0.6
3,708,347 + AO356_16410 0.19 -0.8
3,708,347 + AO356_16410 0.19 +0.6
3,708,347 + AO356_16410 0.19 +0.6
3,708,348 - AO356_16410 0.19 -0.8
3,708,426 + AO356_16410 0.23 +1.9
3,708,427 - AO356_16410 0.23 -1.4
3,708,427 - AO356_16410 0.23 -0.3
3,708,427 - AO356_16410 0.23 -1.4
3,708,427 - AO356_16410 0.23 +0.2
3,708,474 + AO356_16410 0.25 +1.6
3,708,525 + AO356_16410 0.28 -0.1
3,708,525 + AO356_16410 0.28 -1.4
3,708,525 + AO356_16410 0.28 +0.6
3,708,526 - AO356_16410 0.28 -0.4
3,708,526 - AO356_16410 0.28 -0.4
3,708,526 - AO356_16410 0.28 +0.9
3,708,526 - AO356_16410 0.28 +0.2
3,708,526 - AO356_16410 0.28 -0.6
3,708,526 - AO356_16410 0.28 -0.4
3,708,526 - AO356_16410 0.28 +0.7
3,708,594 + AO356_16410 0.31 +1.4
3,708,594 + AO356_16410 0.31 -0.4
3,708,594 + AO356_16410 0.31 -0.4
3,708,595 - AO356_16410 0.31 +3.0
3,708,595 - AO356_16410 0.31 +2.4
3,708,629 + AO356_16410 0.32 +1.6
3,708,666 + AO356_16410 0.34 -0.4
3,708,667 - AO356_16410 0.34 +1.6
3,708,667 - AO356_16410 0.34 -2.0
3,708,699 - AO356_16410 0.36 -0.4
3,708,846 - AO356_16410 0.42 -0.5
3,709,220 + AO356_16410 0.59 -0.0
3,709,220 + AO356_16410 0.59 -1.4
3,709,221 - AO356_16410 0.59 +1.2
3,709,221 - AO356_16410 0.59 -0.4
3,709,272 - AO356_16410 0.62 +0.6
3,709,272 - AO356_16410 0.62 -1.0
3,709,545 - AO356_16410 0.74 +1.2
3,709,899 + -0.0
3,709,899 + +1.3
3,709,899 + -0.2
3,709,900 - +0.6
3,710,086 + -0.4
3,710,087 - -0.4
3,710,160 - -0.4
3,710,219 + -0.1
3,710,219 + +1.2
3,710,220 - +0.6
3,710,220 - -0.4
3,710,241 - -1.7
3,710,241 - +1.0
3,710,241 - +0.6
3,710,241 - -0.4
3,710,241 - -1.0
3,710,283 + +0.8
3,710,283 + -0.4
3,710,284 - -0.4
3,710,284 - +1.6
3,710,284 - +1.2
3,710,316 + +0.6
3,710,317 - -1.0
3,710,317 - -0.4
3,710,331 + -0.3
3,710,348 + -1.4
3,710,348 + +0.2
3,710,349 - -0.4
3,710,349 - -0.4
3,710,384 + AO356_16415 0.10 -0.9
3,710,384 + AO356_16415 0.10 -0.4
3,710,384 + AO356_16415 0.10 -0.0
3,710,384 + AO356_16415 0.10 -0.4
3,710,385 - AO356_16415 0.10 +0.3
3,710,610 + AO356_16415 0.20 -2.0
3,710,610 + AO356_16415 0.20 +1.6
3,710,610 + AO356_16415 0.20 +1.2
3,710,610 + AO356_16415 0.20 +1.0
3,710,610 + AO356_16415 0.20 +0.6
3,710,610 + AO356_16415 0.20 +0.9
3,710,610 + AO356_16415 0.20 +1.0
3,710,610 + AO356_16415 0.20 -1.0
3,710,611 - AO356_16415 0.20 -1.4
3,710,611 - AO356_16415 0.20 -0.4
3,710,611 - AO356_16415 0.20 -1.4
3,710,611 - AO356_16415 0.20 +1.2
3,710,611 - AO356_16415 0.20 -0.4
3,710,611 - AO356_16415 0.20 -0.1
3,710,611 - AO356_16415 0.20 +1.2
3,710,612 + AO356_16415 0.20 -1.2
3,710,654 + AO356_16415 0.22 +0.3
3,710,654 + AO356_16415 0.22 +0.7
3,710,654 + AO356_16415 0.22 -0.2
3,710,654 + AO356_16415 0.22 +0.6
3,710,655 - AO356_16415 0.22 -0.4
3,710,655 - AO356_16415 0.22 +0.6
3,710,711 + AO356_16415 0.25 +0.6
3,710,711 + AO356_16415 0.25 +0.2
3,710,712 - AO356_16415 0.25 -1.3
3,710,738 + AO356_16415 0.26 -3.0
3,710,738 + AO356_16415 0.26 +0.2
3,710,738 + AO356_16415 0.26 +1.9
3,710,739 - AO356_16415 0.26 -2.4
3,710,739 - AO356_16415 0.26 +0.2
3,710,739 - AO356_16415 0.26 +0.6
3,710,768 + AO356_16415 0.27 -0.4
3,710,769 - AO356_16415 0.27 -1.2
3,710,769 - AO356_16415 0.27 +0.3
3,710,769 - AO356_16415 0.27 +0.6
3,710,854 - AO356_16415 0.31 +0.6
3,710,854 - AO356_16415 0.31 -1.2
3,710,937 - AO356_16415 0.35 -0.4
3,710,970 + AO356_16415 0.36 +1.2
3,710,970 + AO356_16415 0.36 -0.4
3,710,971 - AO356_16415 0.36 +1.2
3,710,985 + AO356_16415 0.37 +0.6
3,710,985 + AO356_16415 0.37 +0.2
3,710,985 + AO356_16415 0.37 +0.6
3,710,986 - AO356_16415 0.37 +1.6
3,710,986 - AO356_16415 0.37 -0.4
3,710,986 - AO356_16415 0.37 +0.6
3,710,986 - AO356_16415 0.37 -0.1
3,710,986 - AO356_16415 0.37 +1.6
3,710,986 - AO356_16415 0.37 -1.4
3,711,069 + AO356_16415 0.41 +0.6
3,711,069 + AO356_16415 0.41 -1.4
3,711,070 - AO356_16415 0.41 +0.2
3,711,099 + AO356_16415 0.42 +0.3
3,711,099 + AO356_16415 0.42 -1.0
3,711,100 - AO356_16415 0.42 -0.1
3,711,100 - AO356_16415 0.42 -1.6

Or see this region's nucleotide sequence