Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15510

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15505 and AO356_15510 are separated by 128 nucleotidesAO356_15510 and AO356_15515 are separated by 21 nucleotidesAO356_15515 and AO356_15520 are separated by 118 nucleotides AO356_15505: AO356_15505 - ABC transporter substrate-binding protein, at 3,511,518 to 3,512,267 _15505 AO356_15510: AO356_15510 - nuclease, at 3,512,396 to 3,512,875 _15510 AO356_15515: AO356_15515 - DNA polymerase III subunit epsilon, at 3,512,897 to 3,513,508 _15515 AO356_15520: AO356_15520 - AsnC family transcriptional regulator, at 3,513,627 to 3,514,079 _15520 Position (kb) 3512 3513Strain fitness (log2 ratio) -2 -1 0 1 2at 3511.410 kb on + strandat 3511.410 kb on + strandat 3511.411 kb on - strandat 3511.421 kb on + strandat 3511.421 kb on + strandat 3511.422 kb on - strandat 3511.456 kb on - strandat 3511.456 kb on - strandat 3511.653 kb on + strand, within AO356_15505at 3511.653 kb on + strand, within AO356_15505at 3511.654 kb on - strand, within AO356_15505at 3511.947 kb on + strand, within AO356_15505at 3511.947 kb on + strand, within AO356_15505at 3511.947 kb on + strand, within AO356_15505at 3511.948 kb on - strand, within AO356_15505at 3512.185 kb on - strand, within AO356_15505at 3512.185 kb on - strand, within AO356_15505at 3512.185 kb on - strand, within AO356_15505at 3512.185 kb on - strand, within AO356_15505at 3512.220 kb on + strandat 3512.220 kb on + strandat 3512.220 kb on + strandat 3512.221 kb on - strandat 3512.308 kb on + strandat 3512.309 kb on - strandat 3512.337 kb on + strandat 3512.337 kb on + strandat 3512.337 kb on + strandat 3512.338 kb on - strandat 3512.338 kb on - strandat 3512.370 kb on + strandat 3512.370 kb on + strandat 3512.370 kb on + strandat 3512.370 kb on + strandat 3512.370 kb on + strandat 3512.370 kb on + strandat 3512.370 kb on + strandat 3512.370 kb on + strandat 3512.371 kb on - strandat 3512.371 kb on - strandat 3512.371 kb on - strandat 3512.371 kb on - strandat 3512.371 kb on - strandat 3512.435 kb on + strandat 3512.435 kb on + strandat 3512.436 kb on - strandat 3512.438 kb on + strandat 3512.439 kb on - strandat 3512.439 kb on - strandat 3512.439 kb on - strandat 3512.439 kb on - strandat 3512.439 kb on - strandat 3512.456 kb on + strand, within AO356_15510at 3512.456 kb on + strand, within AO356_15510at 3512.456 kb on + strand, within AO356_15510at 3512.457 kb on - strand, within AO356_15510at 3512.457 kb on - strand, within AO356_15510at 3512.474 kb on + strand, within AO356_15510at 3512.475 kb on - strand, within AO356_15510at 3512.475 kb on - strand, within AO356_15510at 3512.525 kb on + strand, within AO356_15510at 3512.525 kb on + strand, within AO356_15510at 3512.525 kb on + strand, within AO356_15510at 3512.525 kb on + strand, within AO356_15510at 3512.526 kb on - strand, within AO356_15510at 3512.526 kb on - strand, within AO356_15510at 3512.615 kb on + strand, within AO356_15510at 3512.615 kb on + strand, within AO356_15510at 3512.615 kb on + strand, within AO356_15510at 3512.615 kb on + strand, within AO356_15510at 3512.616 kb on - strand, within AO356_15510at 3512.616 kb on - strand, within AO356_15510at 3512.837 kb on + strandat 3512.837 kb on + strandat 3512.837 kb on + strandat 3512.837 kb on + strandat 3512.837 kb on + strandat 3512.838 kb on - strandat 3512.838 kb on - strandat 3512.838 kb on - strandat 3512.838 kb on - strandat 3512.838 kb on - strandat 3512.838 kb on - strandat 3512.838 kb on - strandat 3513.208 kb on + strand, within AO356_15515at 3513.208 kb on + strand, within AO356_15515at 3513.209 kb on - strand, within AO356_15515at 3513.209 kb on - strand, within AO356_15515at 3513.507 kb on - strandat 3513.628 kb on + strandat 3513.628 kb on + strandat 3513.841 kb on + strand, within AO356_15520at 3513.842 kb on - strand, within AO356_15520at 3513.842 kb on - strand, within AO356_15520

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,511,410 + -1.4
3,511,410 + +1.2
3,511,411 - +1.5
3,511,421 + -0.4
3,511,421 + +1.4
3,511,422 - -0.0
3,511,456 - -0.4
3,511,456 - +0.2
3,511,653 + AO356_15505 0.18 -1.4
3,511,653 + AO356_15505 0.18 -0.4
3,511,654 - AO356_15505 0.18 +0.1
3,511,947 + AO356_15505 0.57 -2.4
3,511,947 + AO356_15505 0.57 -0.0
3,511,947 + AO356_15505 0.57 +0.2
3,511,948 - AO356_15505 0.57 +0.6
3,512,185 - AO356_15505 0.89 -0.4
3,512,185 - AO356_15505 0.89 -0.4
3,512,185 - AO356_15505 0.89 -1.9
3,512,185 - AO356_15505 0.89 +1.2
3,512,220 + +0.2
3,512,220 + +1.6
3,512,220 + +0.6
3,512,221 - -0.4
3,512,308 + +0.1
3,512,309 - -0.7
3,512,337 + -0.7
3,512,337 + +0.3
3,512,337 + +2.2
3,512,338 - -0.4
3,512,338 - -0.9
3,512,370 + +0.6
3,512,370 + +1.2
3,512,370 + -0.7
3,512,370 + +0.6
3,512,370 + +1.6
3,512,370 + -0.4
3,512,370 + -2.4
3,512,370 + -0.4
3,512,371 - -0.4
3,512,371 - -0.4
3,512,371 - -0.4
3,512,371 - -0.8
3,512,371 - -0.4
3,512,435 + -0.1
3,512,435 + +0.8
3,512,436 - -0.4
3,512,438 + +0.2
3,512,439 - +0.6
3,512,439 - -0.4
3,512,439 - -0.4
3,512,439 - -0.4
3,512,439 - -0.4
3,512,456 + AO356_15510 0.12 +1.2
3,512,456 + AO356_15510 0.12 +1.5
3,512,456 + AO356_15510 0.12 -1.4
3,512,457 - AO356_15510 0.13 -0.8
3,512,457 - AO356_15510 0.13 +0.2
3,512,474 + AO356_15510 0.16 +1.6
3,512,475 - AO356_15510 0.16 -0.8
3,512,475 - AO356_15510 0.16 +1.2
3,512,525 + AO356_15510 0.27 -0.8
3,512,525 + AO356_15510 0.27 -0.4
3,512,525 + AO356_15510 0.27 +0.4
3,512,525 + AO356_15510 0.27 -0.4
3,512,526 - AO356_15510 0.27 -0.4
3,512,526 - AO356_15510 0.27 -0.9
3,512,615 + AO356_15510 0.46 +1.2
3,512,615 + AO356_15510 0.46 -0.9
3,512,615 + AO356_15510 0.46 -1.9
3,512,615 + AO356_15510 0.46 -1.9
3,512,616 - AO356_15510 0.46 +0.6
3,512,616 - AO356_15510 0.46 +0.2
3,512,837 + -0.4
3,512,837 + +2.1
3,512,837 + -1.6
3,512,837 + -0.7
3,512,837 + +1.5
3,512,838 - -1.4
3,512,838 - +1.0
3,512,838 - -0.9
3,512,838 - -0.4
3,512,838 - +0.6
3,512,838 - -0.9
3,512,838 - +0.6
3,513,208 + AO356_15515 0.51 +0.1
3,513,208 + AO356_15515 0.51 +0.6
3,513,209 - AO356_15515 0.51 -1.9
3,513,209 - AO356_15515 0.51 +0.2
3,513,507 - -0.4
3,513,628 + -0.9
3,513,628 + -1.7
3,513,841 + AO356_15520 0.47 +0.2
3,513,842 - AO356_15520 0.47 -0.4
3,513,842 - AO356_15520 0.47 +1.2

Or see this region's nucleotide sequence