Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15075

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15065 and AO356_15070 are separated by 19 nucleotidesAO356_15070 and AO356_15075 are separated by 12 nucleotidesAO356_15075 and AO356_15080 are separated by 137 nucleotides AO356_15065: AO356_15065 - hypothetical protein, at 3,408,211 to 3,408,639 _15065 AO356_15070: AO356_15070 - hypothetical protein, at 3,408,659 to 3,409,363 _15070 AO356_15075: AO356_15075 - hypothetical protein, at 3,409,376 to 3,410,533 _15075 AO356_15080: AO356_15080 - phosphatidate cytidylyltransferase, at 3,410,671 to 3,411,603 _15080 Position (kb) 3409 3410 3411Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3408.433 kb on + strand, within AO356_15065at 3408.433 kb on + strand, within AO356_15065at 3408.571 kb on + strand, within AO356_15065at 3408.571 kb on + strand, within AO356_15065at 3408.572 kb on - strand, within AO356_15065at 3408.572 kb on - strand, within AO356_15065at 3408.674 kb on + strandat 3408.675 kb on - strandat 3408.675 kb on - strandat 3408.675 kb on - strandat 3408.744 kb on - strand, within AO356_15070at 3408.761 kb on + strand, within AO356_15070at 3408.762 kb on - strand, within AO356_15070at 3408.827 kb on + strand, within AO356_15070at 3408.827 kb on + strand, within AO356_15070at 3408.827 kb on + strand, within AO356_15070at 3408.828 kb on - strand, within AO356_15070at 3408.870 kb on - strand, within AO356_15070at 3409.115 kb on + strand, within AO356_15070at 3409.115 kb on + strand, within AO356_15070at 3409.116 kb on - strand, within AO356_15070at 3409.116 kb on - strand, within AO356_15070at 3409.116 kb on - strand, within AO356_15070at 3409.116 kb on - strand, within AO356_15070at 3409.238 kb on + strand, within AO356_15070at 3409.238 kb on + strand, within AO356_15070at 3409.239 kb on - strand, within AO356_15070at 3409.467 kb on - strandat 3409.485 kb on - strandat 3409.487 kb on + strandat 3409.487 kb on + strandat 3409.488 kb on - strandat 3409.488 kb on - strandat 3409.488 kb on - strandat 3409.488 kb on - strandat 3409.671 kb on - strand, within AO356_15075at 3409.671 kb on - strand, within AO356_15075at 3409.730 kb on + strand, within AO356_15075at 3409.730 kb on + strand, within AO356_15075at 3409.730 kb on + strand, within AO356_15075at 3409.731 kb on - strand, within AO356_15075at 3409.731 kb on - strand, within AO356_15075at 3409.731 kb on - strand, within AO356_15075at 3409.731 kb on - strand, within AO356_15075at 3409.731 kb on - strand, within AO356_15075at 3409.752 kb on - strand, within AO356_15075at 3409.941 kb on - strand, within AO356_15075at 3409.941 kb on - strand, within AO356_15075at 3409.941 kb on - strand, within AO356_15075at 3410.126 kb on - strand, within AO356_15075at 3410.126 kb on - strand, within AO356_15075at 3410.126 kb on - strand, within AO356_15075at 3410.249 kb on - strand, within AO356_15075at 3410.249 kb on - strand, within AO356_15075at 3410.337 kb on + strand, within AO356_15075at 3410.337 kb on + strand, within AO356_15075at 3410.337 kb on + strand, within AO356_15075at 3410.355 kb on - strand, within AO356_15075at 3410.414 kb on + strand, within AO356_15075at 3410.414 kb on + strand, within AO356_15075at 3410.415 kb on - strand, within AO356_15075at 3410.415 kb on - strand, within AO356_15075at 3410.415 kb on - strand, within AO356_15075at 3410.649 kb on + strandat 3410.649 kb on + strandat 3410.649 kb on + strandat 3410.649 kb on + strandat 3410.649 kb on + strandat 3410.650 kb on - strandat 3411.011 kb on + strand, within AO356_15080at 3411.011 kb on + strand, within AO356_15080at 3411.011 kb on + strand, within AO356_15080at 3411.011 kb on + strand, within AO356_15080at 3411.012 kb on - strand, within AO356_15080at 3411.012 kb on - strand, within AO356_15080at 3411.012 kb on - strand, within AO356_15080at 3411.186 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.230 kb on + strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.231 kb on - strand, within AO356_15080at 3411.260 kb on + strand, within AO356_15080at 3411.261 kb on - strand, within AO356_15080at 3411.269 kb on + strand, within AO356_15080at 3411.269 kb on + strand, within AO356_15080at 3411.269 kb on + strand, within AO356_15080at 3411.272 kb on + strand, within AO356_15080at 3411.273 kb on - strand, within AO356_15080at 3411.273 kb on - strand, within AO356_15080at 3411.273 kb on - strand, within AO356_15080at 3411.284 kb on + strand, within AO356_15080at 3411.284 kb on + strand, within AO356_15080at 3411.284 kb on + strand, within AO356_15080at 3411.284 kb on + strand, within AO356_15080at 3411.284 kb on + strand, within AO356_15080at 3411.284 kb on + strand, within AO356_15080at 3411.285 kb on - strand, within AO356_15080at 3411.285 kb on - strand, within AO356_15080at 3411.285 kb on - strand, within AO356_15080at 3411.306 kb on - strand, within AO356_15080at 3411.306 kb on - strand, within AO356_15080at 3411.306 kb on - strand, within AO356_15080at 3411.377 kb on + strand, within AO356_15080at 3411.377 kb on + strand, within AO356_15080at 3411.392 kb on + strand, within AO356_15080at 3411.393 kb on - strand, within AO356_15080at 3411.393 kb on - strand, within AO356_15080

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,408,433 + AO356_15065 0.52 -0.9
3,408,433 + AO356_15065 0.52 -0.7
3,408,571 + AO356_15065 0.84 +1.0
3,408,571 + AO356_15065 0.84 +0.1
3,408,572 - AO356_15065 0.84 -1.0
3,408,572 - AO356_15065 0.84 -0.3
3,408,674 + +1.7
3,408,675 - +0.3
3,408,675 - +0.9
3,408,675 - +0.4
3,408,744 - AO356_15070 0.12 -0.6
3,408,761 + AO356_15070 0.14 -0.9
3,408,762 - AO356_15070 0.15 +0.7
3,408,827 + AO356_15070 0.24 +0.5
3,408,827 + AO356_15070 0.24 +1.0
3,408,827 + AO356_15070 0.24 +1.3
3,408,828 - AO356_15070 0.24 -0.3
3,408,870 - AO356_15070 0.30 -0.4
3,409,115 + AO356_15070 0.65 +1.3
3,409,115 + AO356_15070 0.65 +0.7
3,409,116 - AO356_15070 0.65 +0.4
3,409,116 - AO356_15070 0.65 +0.8
3,409,116 - AO356_15070 0.65 -0.3
3,409,116 - AO356_15070 0.65 +1.0
3,409,238 + AO356_15070 0.82 -0.7
3,409,238 + AO356_15070 0.82 -0.3
3,409,239 - AO356_15070 0.82 +0.1
3,409,467 - -0.0
3,409,485 - -0.6
3,409,487 + +0.1
3,409,487 + +0.5
3,409,488 - +1.7
3,409,488 - -0.3
3,409,488 - +1.0
3,409,488 - -0.3
3,409,671 - AO356_15075 0.25 +0.7
3,409,671 - AO356_15075 0.25 +0.4
3,409,730 + AO356_15075 0.31 -0.7
3,409,730 + AO356_15075 0.31 -0.3
3,409,730 + AO356_15075 0.31 +0.7
3,409,731 - AO356_15075 0.31 +1.9
3,409,731 - AO356_15075 0.31 +0.4
3,409,731 - AO356_15075 0.31 -0.6
3,409,731 - AO356_15075 0.31 +0.1
3,409,731 - AO356_15075 0.31 -0.3
3,409,752 - AO356_15075 0.32 -1.0
3,409,941 - AO356_15075 0.49 -1.9
3,409,941 - AO356_15075 0.49 -1.3
3,409,941 - AO356_15075 0.49 -0.7
3,410,126 - AO356_15075 0.65 +0.7
3,410,126 - AO356_15075 0.65 +0.6
3,410,126 - AO356_15075 0.65 +1.3
3,410,249 - AO356_15075 0.75 +1.3
3,410,249 - AO356_15075 0.75 -0.6
3,410,337 + AO356_15075 0.83 -1.1
3,410,337 + AO356_15075 0.83 +0.7
3,410,337 + AO356_15075 0.83 -0.3
3,410,355 - AO356_15075 0.85 -2.6
3,410,414 + AO356_15075 0.90 +1.3
3,410,414 + AO356_15075 0.90 +1.3
3,410,415 - AO356_15075 0.90 -0.3
3,410,415 - AO356_15075 0.90 -0.7
3,410,415 - AO356_15075 0.90 -2.3
3,410,649 + -1.9
3,410,649 + -1.3
3,410,649 + -1.9
3,410,649 + +0.2
3,410,649 + +2.3
3,410,650 - +1.5
3,411,011 + AO356_15080 0.36 -0.0
3,411,011 + AO356_15080 0.36 -0.3
3,411,011 + AO356_15080 0.36 -0.6
3,411,011 + AO356_15080 0.36 +1.2
3,411,012 - AO356_15080 0.37 -0.3
3,411,012 - AO356_15080 0.37 +0.7
3,411,012 - AO356_15080 0.37 +0.4
3,411,186 + AO356_15080 0.55 +0.3
3,411,230 + AO356_15080 0.60 +0.7
3,411,230 + AO356_15080 0.60 +0.4
3,411,230 + AO356_15080 0.60 -1.3
3,411,230 + AO356_15080 0.60 +1.1
3,411,230 + AO356_15080 0.60 +3.6
3,411,230 + AO356_15080 0.60 -0.7
3,411,230 + AO356_15080 0.60 +1.0
3,411,230 + AO356_15080 0.60 +1.5
3,411,230 + AO356_15080 0.60 +0.3
3,411,230 + AO356_15080 0.60 +0.4
3,411,231 - AO356_15080 0.60 +0.8
3,411,231 - AO356_15080 0.60 -2.6
3,411,231 - AO356_15080 0.60 -0.3
3,411,231 - AO356_15080 0.60 -1.7
3,411,231 - AO356_15080 0.60 -0.3
3,411,231 - AO356_15080 0.60 +1.0
3,411,231 - AO356_15080 0.60 +0.3
3,411,231 - AO356_15080 0.60 +1.4
3,411,260 + AO356_15080 0.63 +0.7
3,411,261 - AO356_15080 0.63 -0.9
3,411,269 + AO356_15080 0.64 -0.3
3,411,269 + AO356_15080 0.64 +2.3
3,411,269 + AO356_15080 0.64 +1.7
3,411,272 + AO356_15080 0.64 -0.3
3,411,273 - AO356_15080 0.65 -0.0
3,411,273 - AO356_15080 0.65 -0.3
3,411,273 - AO356_15080 0.65 +0.7
3,411,284 + AO356_15080 0.66 +1.7
3,411,284 + AO356_15080 0.66 -1.3
3,411,284 + AO356_15080 0.66 +1.5
3,411,284 + AO356_15080 0.66 +0.7
3,411,284 + AO356_15080 0.66 +1.7
3,411,284 + AO356_15080 0.66 -0.3
3,411,285 - AO356_15080 0.66 +0.3
3,411,285 - AO356_15080 0.66 +0.3
3,411,285 - AO356_15080 0.66 -0.1
3,411,306 - AO356_15080 0.68 -0.3
3,411,306 - AO356_15080 0.68 -0.1
3,411,306 - AO356_15080 0.68 -0.6
3,411,377 + AO356_15080 0.76 -0.3
3,411,377 + AO356_15080 0.76 +1.3
3,411,392 + AO356_15080 0.77 -0.3
3,411,393 - AO356_15080 0.77 -0.1
3,411,393 - AO356_15080 0.77 -0.3

Or see this region's nucleotide sequence