Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14875

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14870 and AO356_14875 overlap by 8 nucleotidesAO356_14875 and AO356_14880 are separated by 104 nucleotides AO356_14870: AO356_14870 - dTDP-4-dehydrorhamnose reductase, at 3,368,718 to 3,369,602 _14870 AO356_14875: AO356_14875 - NAD-dependent dehydratase, at 3,369,595 to 3,370,524 _14875 AO356_14880: AO356_14880 - hypothetical protein, at 3,370,629 to 3,371,327 _14880 Position (kb) 3369 3370 3371Strain fitness (log2 ratio) -2 -1 0 1 2at 3368.610 kb on + strandat 3368.610 kb on + strandat 3368.630 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.697 kb on + strandat 3368.717 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.732 kb on + strandat 3368.737 kb on + strandat 3368.737 kb on + strandat 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.898 kb on + strand, within AO356_14870at 3368.901 kb on + strand, within AO356_14870at 3368.901 kb on + strand, within AO356_14870at 3368.901 kb on + strand, within AO356_14870at 3369.057 kb on + strand, within AO356_14870at 3369.348 kb on + strand, within AO356_14870at 3369.348 kb on + strand, within AO356_14870at 3369.348 kb on + strand, within AO356_14870at 3370.613 kb on + strandat 3370.613 kb on + strandat 3370.614 kb on - strandat 3370.619 kb on + strandat 3370.619 kb on + strandat 3370.619 kb on + strandat 3370.620 kb on - strandat 3370.630 kb on + strandat 3370.630 kb on + strandat 3370.631 kb on - strandat 3370.639 kb on + strandat 3370.639 kb on + strandat 3370.639 kb on + strandat 3370.657 kb on + strandat 3370.657 kb on + strandat 3370.657 kb on + strandat 3370.657 kb on + strandat 3370.658 kb on - strandat 3370.726 kb on + strand, within AO356_14880at 3370.726 kb on + strand, within AO356_14880at 3370.727 kb on - strand, within AO356_14880at 3370.727 kb on - strand, within AO356_14880at 3370.727 kb on - strand, within AO356_14880at 3370.727 kb on - strand, within AO356_14880at 3370.751 kb on - strand, within AO356_14880at 3370.751 kb on - strand, within AO356_14880at 3370.792 kb on + strand, within AO356_14880at 3370.792 kb on + strand, within AO356_14880at 3370.792 kb on + strand, within AO356_14880at 3370.792 kb on + strand, within AO356_14880at 3370.792 kb on + strand, within AO356_14880at 3370.793 kb on - strand, within AO356_14880at 3370.900 kb on + strand, within AO356_14880at 3370.900 kb on + strand, within AO356_14880at 3370.901 kb on - strand, within AO356_14880at 3370.901 kb on - strand, within AO356_14880at 3370.901 kb on - strand, within AO356_14880at 3370.921 kb on + strand, within AO356_14880at 3370.921 kb on + strand, within AO356_14880at 3370.921 kb on + strand, within AO356_14880at 3370.921 kb on + strand, within AO356_14880at 3370.922 kb on - strand, within AO356_14880at 3370.957 kb on + strand, within AO356_14880at 3370.958 kb on - strand, within AO356_14880at 3370.958 kb on - strand, within AO356_14880at 3370.958 kb on - strand, within AO356_14880at 3371.101 kb on + strand, within AO356_14880at 3371.101 kb on + strand, within AO356_14880at 3371.101 kb on + strand, within AO356_14880at 3371.102 kb on - strand, within AO356_14880at 3371.102 kb on - strand, within AO356_14880at 3371.102 kb on - strand, within AO356_14880at 3371.258 kb on + strandat 3371.368 kb on - strandat 3371.421 kb on - strandat 3371.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,368,610 + +1.4
3,368,610 + -1.8
3,368,630 + +0.8
3,368,697 + +1.1
3,368,697 + +0.8
3,368,697 + -0.2
3,368,697 + +0.4
3,368,697 + +1.4
3,368,717 + -2.2
3,368,732 + -0.2
3,368,732 + -0.2
3,368,732 + -0.2
3,368,732 + -0.2
3,368,732 + -0.2
3,368,732 + +1.4
3,368,737 + -0.2
3,368,737 + -0.2
3,368,898 + AO356_14870 0.20 -1.2
3,368,898 + AO356_14870 0.20 -0.2
3,368,898 + AO356_14870 0.20 +1.4
3,368,898 + AO356_14870 0.20 +0.4
3,368,898 + AO356_14870 0.20 -0.2
3,368,898 + AO356_14870 0.20 +0.8
3,368,898 + AO356_14870 0.20 -0.2
3,368,901 + AO356_14870 0.21 -2.2
3,368,901 + AO356_14870 0.21 -1.8
3,368,901 + AO356_14870 0.21 -0.8
3,369,057 + AO356_14870 0.38 +0.8
3,369,348 + AO356_14870 0.71 +1.4
3,369,348 + AO356_14870 0.71 -0.2
3,369,348 + AO356_14870 0.71 -1.2
3,370,613 + +0.5
3,370,613 + +0.6
3,370,614 - +0.2
3,370,619 + -0.5
3,370,619 + +0.4
3,370,619 + -0.8
3,370,620 - -2.0
3,370,630 + +1.4
3,370,630 + -0.2
3,370,631 - -0.6
3,370,639 + -0.2
3,370,639 + -2.2
3,370,639 + -1.8
3,370,657 + +2.4
3,370,657 + -0.2
3,370,657 + -1.2
3,370,657 + -0.2
3,370,658 - +0.4
3,370,726 + AO356_14880 0.14 +1.4
3,370,726 + AO356_14880 0.14 -1.0
3,370,727 - AO356_14880 0.14 -1.8
3,370,727 - AO356_14880 0.14 +0.4
3,370,727 - AO356_14880 0.14 -1.2
3,370,727 - AO356_14880 0.14 -2.0
3,370,751 - AO356_14880 0.17 -1.2
3,370,751 - AO356_14880 0.17 -0.2
3,370,792 + AO356_14880 0.23 +1.4
3,370,792 + AO356_14880 0.23 -0.4
3,370,792 + AO356_14880 0.23 -0.2
3,370,792 + AO356_14880 0.23 -0.4
3,370,792 + AO356_14880 0.23 -0.2
3,370,793 - AO356_14880 0.23 -1.6
3,370,900 + AO356_14880 0.39 -0.2
3,370,900 + AO356_14880 0.39 +0.6
3,370,901 - AO356_14880 0.39 -0.2
3,370,901 - AO356_14880 0.39 +0.8
3,370,901 - AO356_14880 0.39 -1.2
3,370,921 + AO356_14880 0.42 -1.2
3,370,921 + AO356_14880 0.42 +1.1
3,370,921 + AO356_14880 0.42 -1.8
3,370,921 + AO356_14880 0.42 -0.8
3,370,922 - AO356_14880 0.42 -0.8
3,370,957 + AO356_14880 0.47 +1.8
3,370,958 - AO356_14880 0.47 -0.2
3,370,958 - AO356_14880 0.47 -0.2
3,370,958 - AO356_14880 0.47 -0.2
3,371,101 + AO356_14880 0.68 +0.5
3,371,101 + AO356_14880 0.68 +0.8
3,371,101 + AO356_14880 0.68 +0.0
3,371,102 - AO356_14880 0.68 +0.2
3,371,102 - AO356_14880 0.68 -0.2
3,371,102 - AO356_14880 0.68 +1.4
3,371,258 + +0.4
3,371,368 - -0.8
3,371,421 - +1.6
3,371,502 + +0.5

Or see this region's nucleotide sequence