Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14000 and AO356_14005 are separated by 68 nucleotides AO356_14005 and AO356_14010 are separated by 311 nucleotides AO356_14010 and AO356_14015 are separated by 106 nucleotides
AO356_14000: AO356_14000 - aldehyde dismutase, at 3,179,682 to 3,180,881
_14000
AO356_14005: AO356_14005 - cold-shock protein, at 3,180,950 to 3,181,162
_14005
AO356_14010: AO356_14010 - hypothetical protein, at 3,181,474 to 3,182,049
_14010
AO356_14015: AO356_14015 - hypothetical protein, at 3,182,156 to 3,182,578
_14015
Position (kb)
3180
3181
3182 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3180.052 kb on - strand, within AO356_14000 at 3180.057 kb on + strand, within AO356_14000 at 3180.058 kb on - strand, within AO356_14000 at 3180.096 kb on + strand, within AO356_14000 at 3180.096 kb on + strand, within AO356_14000 at 3180.097 kb on - strand, within AO356_14000 at 3180.097 kb on - strand, within AO356_14000 at 3180.097 kb on - strand, within AO356_14000 at 3180.097 kb on - strand, within AO356_14000 at 3180.097 kb on - strand, within AO356_14000 at 3180.112 kb on - strand, within AO356_14000 at 3180.208 kb on - strand, within AO356_14000 at 3180.252 kb on + strand, within AO356_14000 at 3180.252 kb on + strand, within AO356_14000 at 3180.253 kb on - strand, within AO356_14000 at 3180.253 kb on - strand, within AO356_14000 at 3180.253 kb on - strand, within AO356_14000 at 3180.402 kb on - strand, within AO356_14000 at 3180.402 kb on - strand, within AO356_14000 at 3180.588 kb on + strand, within AO356_14000 at 3180.588 kb on + strand, within AO356_14000 at 3180.588 kb on + strand, within AO356_14000 at 3180.588 kb on + strand, within AO356_14000 at 3180.589 kb on - strand, within AO356_14000 at 3180.589 kb on - strand, within AO356_14000 at 3180.589 kb on - strand, within AO356_14000 at 3180.589 kb on - strand, within AO356_14000 at 3180.589 kb on - strand, within AO356_14000 at 3180.711 kb on + strand, within AO356_14000 at 3180.711 kb on + strand, within AO356_14000 at 3180.712 kb on - strand, within AO356_14000 at 3180.712 kb on - strand, within AO356_14000 at 3180.887 kb on + strand at 3180.951 kb on + strand at 3180.985 kb on + strand, within AO356_14005 at 3180.985 kb on + strand, within AO356_14005 at 3180.985 kb on + strand, within AO356_14005 at 3180.986 kb on - strand, within AO356_14005 at 3180.986 kb on - strand, within AO356_14005 at 3180.986 kb on - strand, within AO356_14005 at 3180.986 kb on - strand, within AO356_14005 at 3180.986 kb on - strand, within AO356_14005 at 3180.986 kb on - strand, within AO356_14005 at 3181.036 kb on + strand, within AO356_14005 at 3181.036 kb on + strand, within AO356_14005 at 3181.036 kb on + strand, within AO356_14005 at 3181.037 kb on - strand, within AO356_14005 at 3181.037 kb on - strand, within AO356_14005 at 3181.038 kb on + strand, within AO356_14005 at 3181.038 kb on + strand, within AO356_14005 at 3181.039 kb on - strand, within AO356_14005 at 3181.062 kb on + strand, within AO356_14005 at 3181.099 kb on + strand, within AO356_14005 at 3181.100 kb on - strand, within AO356_14005 at 3181.111 kb on - strand, within AO356_14005 at 3181.111 kb on - strand, within AO356_14005 at 3181.135 kb on + strand, within AO356_14005 at 3181.189 kb on + strand at 3181.261 kb on + strand at 3181.299 kb on + strand at 3181.300 kb on - strand at 3181.316 kb on + strand at 3181.381 kb on + strand at 3181.381 kb on + strand at 3181.399 kb on + strand at 3181.476 kb on - strand at 3181.550 kb on + strand, within AO356_14010 at 3181.550 kb on + strand, within AO356_14010 at 3181.550 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.664 kb on + strand, within AO356_14010 at 3181.664 kb on + strand, within AO356_14010 at 3181.665 kb on - strand, within AO356_14010 at 3181.665 kb on - strand, within AO356_14010 at 3181.721 kb on + strand, within AO356_14010 at 3181.721 kb on + strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3182.080 kb on + strand at 3182.080 kb on + strand at 3182.081 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 3,180,052 - AO356_14000 0.31 -0.2 3,180,057 + AO356_14000 0.31 +0.2 3,180,058 - AO356_14000 0.31 -0.3 3,180,096 + AO356_14000 0.34 +0.8 3,180,096 + AO356_14000 0.34 +0.3 3,180,097 - AO356_14000 0.35 +1.8 3,180,097 - AO356_14000 0.35 +0.5 3,180,097 - AO356_14000 0.35 -0.9 3,180,097 - AO356_14000 0.35 +0.9 3,180,097 - AO356_14000 0.35 +1.6 3,180,112 - AO356_14000 0.36 +0.8 3,180,208 - AO356_14000 0.44 -2.2 3,180,252 + AO356_14000 0.47 -1.5 3,180,252 + AO356_14000 0.47 +0.1 3,180,253 - AO356_14000 0.48 +0.8 3,180,253 - AO356_14000 0.48 -0.8 3,180,253 - AO356_14000 0.48 -2.0 3,180,402 - AO356_14000 0.60 -0.2 3,180,402 - AO356_14000 0.60 +2.1 3,180,588 + AO356_14000 0.76 +0.1 3,180,588 + AO356_14000 0.76 -0.8 3,180,588 + AO356_14000 0.76 -0.2 3,180,588 + AO356_14000 0.76 +1.7 3,180,589 - AO356_14000 0.76 +1.4 3,180,589 - AO356_14000 0.76 -0.2 3,180,589 - AO356_14000 0.76 +0.1 3,180,589 - AO356_14000 0.76 +0.5 3,180,589 - AO356_14000 0.76 +2.4 3,180,711 + AO356_14000 0.86 +0.6 3,180,711 + AO356_14000 0.86 +1.8 3,180,712 - AO356_14000 0.86 -0.2 3,180,712 - AO356_14000 0.86 +2.5 3,180,887 + +0.8 3,180,951 + -0.2 3,180,985 + AO356_14005 0.16 +0.6 3,180,985 + AO356_14005 0.16 +0.5 3,180,985 + AO356_14005 0.16 -1.4 3,180,986 - AO356_14005 0.17 -0.2 3,180,986 - AO356_14005 0.17 -0.2 3,180,986 - AO356_14005 0.17 +1.4 3,180,986 - AO356_14005 0.17 -0.2 3,180,986 - AO356_14005 0.17 +1.4 3,180,986 - AO356_14005 0.17 +1.0 3,181,036 + AO356_14005 0.40 +0.4 3,181,036 + AO356_14005 0.40 -0.8 3,181,036 + AO356_14005 0.40 +0.6 3,181,037 - AO356_14005 0.41 +0.8 3,181,037 - AO356_14005 0.41 -0.2 3,181,038 + AO356_14005 0.41 +2.1 3,181,038 + AO356_14005 0.41 +2.6 3,181,039 - AO356_14005 0.42 +1.2 3,181,062 + AO356_14005 0.53 -0.2 3,181,099 + AO356_14005 0.70 -0.4 3,181,100 - AO356_14005 0.70 +0.2 3,181,111 - AO356_14005 0.76 +2.6 3,181,111 - AO356_14005 0.76 +1.8 3,181,135 + AO356_14005 0.87 +0.2 3,181,189 + -0.2 3,181,261 + -0.8 3,181,299 + +0.1 3,181,300 - +1.0 3,181,316 + -0.7 3,181,381 + +1.4 3,181,381 + +0.2 3,181,399 + -0.2 3,181,476 - +0.2 3,181,550 + AO356_14010 0.13 -1.8 3,181,550 + AO356_14010 0.13 -0.2 3,181,550 + AO356_14010 0.13 +1.1 3,181,619 + AO356_14010 0.25 -0.2 3,181,619 + AO356_14010 0.25 -0.5 3,181,619 + AO356_14010 0.25 -0.2 3,181,619 + AO356_14010 0.25 -0.5 3,181,619 + AO356_14010 0.25 +1.6 3,181,620 - AO356_14010 0.25 -0.6 3,181,620 - AO356_14010 0.25 -0.2 3,181,620 - AO356_14010 0.25 -0.4 3,181,620 - AO356_14010 0.25 +1.8 3,181,664 + AO356_14010 0.33 +0.2 3,181,664 + AO356_14010 0.33 -0.9 3,181,665 - AO356_14010 0.33 +1.8 3,181,665 - AO356_14010 0.33 -0.2 3,181,721 + AO356_14010 0.43 -0.2 3,181,721 + AO356_14010 0.43 +0.8 3,181,722 - AO356_14010 0.43 +1.1 3,181,722 - AO356_14010 0.43 +0.8 3,181,722 - AO356_14010 0.43 -0.2 3,181,722 - AO356_14010 0.43 +0.8 3,181,722 - AO356_14010 0.43 +0.2 3,182,080 + +1.4 3,182,080 + +0.8 3,182,081 - +1.0 3,182,161 - -2.2 3,182,161 - -0.2 3,182,161 - +2.0 3,182,161 - +1.8 3,182,161 - +1.6
Or see this region's nucleotide sequence