Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13800

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13795 and AO356_13800 are separated by 79 nucleotidesAO356_13800 and AO356_13805 are separated by 310 nucleotides AO356_13795: AO356_13795 - betaine-aldehyde dehydrogenase, at 3,130,106 to 3,131,578 _13795 AO356_13800: AO356_13800 - transcriptional repressor BetI, at 3,131,658 to 3,132,278 _13800 AO356_13805: AO356_13805 - ABC transporter for Carnitine, ATPase component (from data), at 3,132,589 to 3,133,767 _13805 Position (kb) 3131 3132 3133Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3130.697 kb on + strand, within AO356_13795at 3130.740 kb on + strand, within AO356_13795at 3130.740 kb on + strand, within AO356_13795at 3130.741 kb on - strand, within AO356_13795at 3130.741 kb on - strand, within AO356_13795at 3130.967 kb on + strand, within AO356_13795at 3130.967 kb on + strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3130.968 kb on - strand, within AO356_13795at 3131.004 kb on + strand, within AO356_13795at 3131.004 kb on + strand, within AO356_13795at 3131.005 kb on - strand, within AO356_13795at 3131.119 kb on - strand, within AO356_13795at 3131.145 kb on - strand, within AO356_13795at 3131.169 kb on + strand, within AO356_13795at 3131.170 kb on - strand, within AO356_13795at 3131.170 kb on - strand, within AO356_13795at 3131.232 kb on + strand, within AO356_13795at 3131.232 kb on + strand, within AO356_13795at 3131.232 kb on + strand, within AO356_13795at 3131.233 kb on - strand, within AO356_13795at 3131.233 kb on - strand, within AO356_13795at 3131.233 kb on - strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.235 kb on + strand, within AO356_13795at 3131.236 kb on - strand, within AO356_13795at 3131.236 kb on - strand, within AO356_13795at 3131.236 kb on - strand, within AO356_13795at 3131.287 kb on - strand, within AO356_13795at 3131.477 kb on + strandat 3131.477 kb on + strandat 3131.478 kb on - strandat 3131.478 kb on - strandat 3131.478 kb on - strandat 3131.535 kb on + strandat 3131.551 kb on - strandat 3131.578 kb on + strandat 3131.578 kb on + strandat 3131.578 kb on + strandat 3131.578 kb on + strandat 3131.579 kb on - strandat 3131.630 kb on - strandat 3131.631 kb on + strandat 3131.631 kb on + strandat 3131.631 kb on + strandat 3131.631 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.719 kb on + strandat 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.720 kb on - strand, within AO356_13800at 3131.725 kb on + strand, within AO356_13800at 3131.878 kb on + strand, within AO356_13800at 3131.879 kb on - strand, within AO356_13800at 3132.091 kb on + strand, within AO356_13800at 3132.091 kb on + strand, within AO356_13800at 3132.092 kb on - strand, within AO356_13800at 3132.134 kb on - strand, within AO356_13800at 3132.134 kb on - strand, within AO356_13800at 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.280 kb on + strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.281 kb on - strandat 3132.293 kb on + strandat 3132.293 kb on + strandat 3132.293 kb on + strandat 3132.294 kb on - strandat 3132.294 kb on - strandat 3132.294 kb on - strandat 3132.341 kb on - strandat 3132.341 kb on - strandat 3132.383 kb on + strandat 3132.383 kb on + strandat 3132.384 kb on - strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.420 kb on + strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.421 kb on - strandat 3132.485 kb on + strandat 3132.485 kb on + strandat 3132.485 kb on + strandat 3132.485 kb on + strandat 3132.486 kb on - strandat 3132.486 kb on - strandat 3132.486 kb on - strandat 3132.486 kb on - strandat 3132.487 kb on + strandat 3132.487 kb on + strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.488 kb on - strandat 3132.620 kb on + strandat 3132.620 kb on + strandat 3132.980 kb on + strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3132.981 kb on - strand, within AO356_13805at 3133.023 kb on - strand, within AO356_13805

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,130,697 + AO356_13795 0.40 -0.2
3,130,740 + AO356_13795 0.43 +1.1
3,130,740 + AO356_13795 0.43 -0.2
3,130,741 - AO356_13795 0.43 -0.2
3,130,741 - AO356_13795 0.43 +1.2
3,130,967 + AO356_13795 0.58 +0.2
3,130,967 + AO356_13795 0.58 +1.4
3,130,968 - AO356_13795 0.59 -1.3
3,130,968 - AO356_13795 0.59 +0.2
3,130,968 - AO356_13795 0.59 +0.8
3,130,968 - AO356_13795 0.59 -1.2
3,130,968 - AO356_13795 0.59 +1.2
3,130,968 - AO356_13795 0.59 +1.2
3,130,968 - AO356_13795 0.59 +0.6
3,131,004 + AO356_13795 0.61 -1.8
3,131,004 + AO356_13795 0.61 -0.4
3,131,005 - AO356_13795 0.61 +0.8
3,131,119 - AO356_13795 0.69 +0.8
3,131,145 - AO356_13795 0.71 +0.4
3,131,169 + AO356_13795 0.72 -2.5
3,131,170 - AO356_13795 0.72 -1.1
3,131,170 - AO356_13795 0.72 -0.2
3,131,232 + AO356_13795 0.76 +2.0
3,131,232 + AO356_13795 0.76 +0.3
3,131,232 + AO356_13795 0.76 +1.0
3,131,233 - AO356_13795 0.77 -0.2
3,131,233 - AO356_13795 0.77 -0.2
3,131,233 - AO356_13795 0.77 +0.1
3,131,235 + AO356_13795 0.77 -0.2
3,131,235 + AO356_13795 0.77 +1.6
3,131,235 + AO356_13795 0.77 -0.2
3,131,235 + AO356_13795 0.77 +0.1
3,131,235 + AO356_13795 0.77 +1.6
3,131,236 - AO356_13795 0.77 +0.4
3,131,236 - AO356_13795 0.77 +0.2
3,131,236 - AO356_13795 0.77 +1.4
3,131,287 - AO356_13795 0.80 +1.2
3,131,477 + +0.3
3,131,477 + -0.3
3,131,478 - +0.8
3,131,478 - +1.1
3,131,478 - +0.8
3,131,535 + +0.7
3,131,551 - -0.3
3,131,578 + +0.6
3,131,578 + +0.8
3,131,578 + +0.8
3,131,578 + -0.4
3,131,579 - +0.2
3,131,630 - +0.8
3,131,631 + -1.6
3,131,631 + +0.9
3,131,631 + -1.8
3,131,631 + -1.9
3,131,719 + -0.2
3,131,719 + -0.5
3,131,719 + -1.8
3,131,719 + +0.2
3,131,719 + +0.8
3,131,719 + -0.2
3,131,719 + -1.8
3,131,720 - AO356_13800 0.10 -0.2
3,131,720 - AO356_13800 0.10 +0.8
3,131,720 - AO356_13800 0.10 -0.2
3,131,720 - AO356_13800 0.10 +0.7
3,131,720 - AO356_13800 0.10 +0.2
3,131,720 - AO356_13800 0.10 -0.4
3,131,720 - AO356_13800 0.10 +0.6
3,131,720 - AO356_13800 0.10 +1.6
3,131,720 - AO356_13800 0.10 +0.2
3,131,725 + AO356_13800 0.11 +1.0
3,131,878 + AO356_13800 0.35 +0.6
3,131,879 - AO356_13800 0.36 +1.2
3,132,091 + AO356_13800 0.70 -0.4
3,132,091 + AO356_13800 0.70 -0.6
3,132,092 - AO356_13800 0.70 +0.1
3,132,134 - AO356_13800 0.77 -0.4
3,132,134 - AO356_13800 0.77 +1.8
3,132,280 + +0.7
3,132,280 + -0.5
3,132,280 + +0.6
3,132,280 + -0.2
3,132,280 + +0.8
3,132,280 + +1.7
3,132,280 + +0.4
3,132,280 + -0.2
3,132,280 + -0.2
3,132,280 + -0.2
3,132,280 + +0.7
3,132,281 - +0.8
3,132,281 - +0.5
3,132,281 - -0.3
3,132,281 - +0.8
3,132,281 - +0.2
3,132,281 - +1.2
3,132,281 - +0.8
3,132,281 - +1.2
3,132,281 - +0.4
3,132,281 - +1.6
3,132,293 + +1.2
3,132,293 + -0.2
3,132,293 + -0.4
3,132,294 - +0.1
3,132,294 - +2.4
3,132,294 - -1.2
3,132,341 - -0.4
3,132,341 - -0.2
3,132,383 + +3.2
3,132,383 + -0.2
3,132,384 - -0.2
3,132,420 + -1.8
3,132,420 + -0.2
3,132,420 + +0.4
3,132,420 + -1.2
3,132,420 + +1.7
3,132,420 + -0.2
3,132,421 - -0.2
3,132,421 - -2.0
3,132,421 - +0.8
3,132,421 - +0.2
3,132,421 - -0.2
3,132,421 - -0.2
3,132,485 + +0.2
3,132,485 + +0.1
3,132,485 + -0.2
3,132,485 + -0.2
3,132,486 - -0.9
3,132,486 - -1.2
3,132,486 - +1.3
3,132,486 - +0.7
3,132,487 + -1.0
3,132,487 + -1.4
3,132,488 - +0.5
3,132,488 - +1.1
3,132,488 - -1.0
3,132,488 - +0.1
3,132,488 - +1.2
3,132,488 - +0.3
3,132,488 - +0.5
3,132,488 - -0.2
3,132,620 + +0.4
3,132,620 + -0.2
3,132,980 + AO356_13805 0.33 +1.2
3,132,981 - AO356_13805 0.33 +1.4
3,132,981 - AO356_13805 0.33 -0.2
3,132,981 - AO356_13805 0.33 -0.2
3,132,981 - AO356_13805 0.33 +1.1
3,132,981 - AO356_13805 0.33 +0.2
3,132,981 - AO356_13805 0.33 -0.9
3,132,981 - AO356_13805 0.33 +0.3
3,132,981 - AO356_13805 0.33 +1.2
3,132,981 - AO356_13805 0.33 -1.2
3,133,023 - AO356_13805 0.37 -0.0

Or see this region's nucleotide sequence