Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13780

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13775 and AO356_13780 are separated by 109 nucleotidesAO356_13780 and AO356_13785 overlap by 1 nucleotides AO356_13775: AO356_13775 - EmrB/QacA subfamily drug resistance transporter, at 3,123,568 to 3,124,995 _13775 AO356_13780: AO356_13780 - Zn-dependent protease, at 3,125,105 to 3,126,442 _13780 AO356_13785: AO356_13785 - peptidase C69, at 3,126,442 to 3,127,884 _13785 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -1 0 1 2 3at 3124.259 kb on + strand, within AO356_13775at 3124.260 kb on - strand, within AO356_13775at 3124.260 kb on - strand, within AO356_13775at 3124.449 kb on - strand, within AO356_13775at 3124.505 kb on + strand, within AO356_13775at 3124.506 kb on - strand, within AO356_13775at 3124.506 kb on - strand, within AO356_13775at 3124.823 kb on + strand, within AO356_13775at 3124.823 kb on + strand, within AO356_13775at 3124.823 kb on + strand, within AO356_13775at 3124.823 kb on + strand, within AO356_13775at 3124.823 kb on + strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3124.824 kb on - strand, within AO356_13775at 3125.060 kb on + strandat 3125.060 kb on + strandat 3125.060 kb on + strandat 3125.060 kb on + strandat 3125.060 kb on + strandat 3125.060 kb on + strandat 3125.060 kb on + strandat 3125.060 kb on + strandat 3125.061 kb on - strandat 3125.061 kb on - strandat 3125.061 kb on - strandat 3125.061 kb on - strandat 3125.061 kb on - strandat 3125.106 kb on + strandat 3125.175 kb on + strandat 3125.176 kb on - strandat 3125.176 kb on - strandat 3125.176 kb on - strandat 3125.176 kb on - strandat 3125.244 kb on + strand, within AO356_13780at 3125.244 kb on + strand, within AO356_13780at 3125.244 kb on + strand, within AO356_13780at 3125.245 kb on - strand, within AO356_13780at 3125.245 kb on - strand, within AO356_13780at 3125.245 kb on - strand, within AO356_13780at 3125.245 kb on - strand, within AO356_13780at 3125.358 kb on + strand, within AO356_13780at 3125.359 kb on - strand, within AO356_13780at 3125.359 kb on - strand, within AO356_13780at 3125.368 kb on - strand, within AO356_13780at 3125.386 kb on - strand, within AO356_13780at 3125.386 kb on - strand, within AO356_13780at 3125.455 kb on + strand, within AO356_13780at 3125.460 kb on + strand, within AO356_13780at 3125.460 kb on + strand, within AO356_13780at 3125.461 kb on - strand, within AO356_13780at 3125.496 kb on + strand, within AO356_13780at 3125.496 kb on + strand, within AO356_13780at 3125.497 kb on - strand, within AO356_13780at 3125.497 kb on - strand, within AO356_13780at 3125.497 kb on - strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.661 kb on + strand, within AO356_13780at 3125.662 kb on - strand, within AO356_13780at 3125.662 kb on - strand, within AO356_13780at 3125.763 kb on + strand, within AO356_13780at 3125.881 kb on - strand, within AO356_13780at 3125.881 kb on - strand, within AO356_13780at 3125.881 kb on - strand, within AO356_13780at 3126.006 kb on + strand, within AO356_13780at 3126.006 kb on + strand, within AO356_13780at 3126.006 kb on + strand, within AO356_13780at 3126.007 kb on - strand, within AO356_13780at 3126.007 kb on - strand, within AO356_13780at 3126.007 kb on - strand, within AO356_13780at 3126.382 kb on + strandat 3126.620 kb on + strand, within AO356_13785at 3126.974 kb on + strand, within AO356_13785at 3126.974 kb on + strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3126.975 kb on - strand, within AO356_13785at 3127.082 kb on + strand, within AO356_13785at 3127.082 kb on + strand, within AO356_13785at 3127.083 kb on - strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.415 kb on + strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785at 3127.416 kb on - strand, within AO356_13785

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,124,259 + AO356_13775 0.48 +1.2
3,124,260 - AO356_13775 0.48 +2.6
3,124,260 - AO356_13775 0.48 +0.4
3,124,449 - AO356_13775 0.62 -1.2
3,124,505 + AO356_13775 0.66 +1.7
3,124,506 - AO356_13775 0.66 -0.8
3,124,506 - AO356_13775 0.66 +0.8
3,124,823 + AO356_13775 0.88 -0.3
3,124,823 + AO356_13775 0.88 +0.2
3,124,823 + AO356_13775 0.88 +0.6
3,124,823 + AO356_13775 0.88 -0.8
3,124,823 + AO356_13775 0.88 -0.8
3,124,824 - AO356_13775 0.88 -0.2
3,124,824 - AO356_13775 0.88 -0.2
3,124,824 - AO356_13775 0.88 +1.2
3,124,824 - AO356_13775 0.88 +0.5
3,124,824 - AO356_13775 0.88 +0.8
3,124,824 - AO356_13775 0.88 +1.4
3,124,824 - AO356_13775 0.88 +3.4
3,124,824 - AO356_13775 0.88 -0.8
3,124,824 - AO356_13775 0.88 +0.5
3,125,060 + +0.4
3,125,060 + +0.8
3,125,060 + +1.1
3,125,060 + +1.2
3,125,060 + +1.3
3,125,060 + +0.3
3,125,060 + +1.1
3,125,060 + +2.6
3,125,061 - -0.8
3,125,061 - +0.8
3,125,061 - +1.4
3,125,061 - +2.4
3,125,061 - -0.2
3,125,106 + +1.8
3,125,175 + +0.5
3,125,176 - -1.2
3,125,176 - +0.2
3,125,176 - -0.2
3,125,176 - +1.4
3,125,244 + AO356_13780 0.10 +0.2
3,125,244 + AO356_13780 0.10 -0.2
3,125,244 + AO356_13780 0.10 -0.2
3,125,245 - AO356_13780 0.10 -1.5
3,125,245 - AO356_13780 0.10 +0.4
3,125,245 - AO356_13780 0.10 +1.1
3,125,245 - AO356_13780 0.10 -0.2
3,125,358 + AO356_13780 0.19 +0.1
3,125,359 - AO356_13780 0.19 +1.1
3,125,359 - AO356_13780 0.19 +1.4
3,125,368 - AO356_13780 0.20 +1.4
3,125,386 - AO356_13780 0.21 +0.4
3,125,386 - AO356_13780 0.21 -0.8
3,125,455 + AO356_13780 0.26 +2.4
3,125,460 + AO356_13780 0.27 +1.2
3,125,460 + AO356_13780 0.27 +0.6
3,125,461 - AO356_13780 0.27 -0.2
3,125,496 + AO356_13780 0.29 +1.4
3,125,496 + AO356_13780 0.29 -0.2
3,125,497 - AO356_13780 0.29 +1.8
3,125,497 - AO356_13780 0.29 +1.0
3,125,497 - AO356_13780 0.29 +0.6
3,125,661 + AO356_13780 0.42 +2.2
3,125,661 + AO356_13780 0.42 -0.6
3,125,661 + AO356_13780 0.42 +0.1
3,125,661 + AO356_13780 0.42 +1.8
3,125,662 - AO356_13780 0.42 -0.2
3,125,662 - AO356_13780 0.42 +2.2
3,125,763 + AO356_13780 0.49 +0.1
3,125,881 - AO356_13780 0.58 +2.2
3,125,881 - AO356_13780 0.58 -1.2
3,125,881 - AO356_13780 0.58 +1.1
3,126,006 + AO356_13780 0.67 +1.2
3,126,006 + AO356_13780 0.67 +1.7
3,126,006 + AO356_13780 0.67 +2.8
3,126,007 - AO356_13780 0.67 +1.2
3,126,007 - AO356_13780 0.67 +0.8
3,126,007 - AO356_13780 0.67 -0.2
3,126,382 + +1.5
3,126,620 + AO356_13785 0.12 -1.2
3,126,974 + AO356_13785 0.37 -0.8
3,126,974 + AO356_13785 0.37 +0.5
3,126,975 - AO356_13785 0.37 +1.2
3,126,975 - AO356_13785 0.37 +2.2
3,126,975 - AO356_13785 0.37 +2.6
3,126,975 - AO356_13785 0.37 -1.2
3,127,082 + AO356_13785 0.44 -1.0
3,127,082 + AO356_13785 0.44 +0.7
3,127,083 - AO356_13785 0.44 +0.5
3,127,415 + AO356_13785 0.67 +0.3
3,127,415 + AO356_13785 0.67 +0.6
3,127,415 + AO356_13785 0.67 -0.2
3,127,415 + AO356_13785 0.67 -0.0
3,127,415 + AO356_13785 0.67 +1.3
3,127,416 - AO356_13785 0.67 +1.4
3,127,416 - AO356_13785 0.67 +2.2
3,127,416 - AO356_13785 0.67 +1.9
3,127,416 - AO356_13785 0.67 +2.4

Or see this region's nucleotide sequence