Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13525

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13515 and AO356_13520 overlap by 1 nucleotidesAO356_13520 and AO356_13525 overlap by 8 nucleotidesAO356_13525 and AO356_13530 overlap by 4 nucleotidesAO356_13530 and AO356_13535 overlap by 7 nucleotides AO356_13515: AO356_13515 - triphosphoribosyl-dephospho-CoA synthase MdcB, at 3,066,672 to 3,067,547 _13515 AO356_13520: AO356_13520 - malonate decarboxylase acyl carrier protein, at 3,067,547 to 3,067,846 _13520 AO356_13525: AO356_13525 - biotin-independent malonate decarboxylase subunit beta, at 3,067,839 to 3,068,690 _13525 AO356_13530: AO356_13530 - biotin-independent malonate decarboxylase subunit gamma, at 3,068,687 to 3,069,490 _13530 AO356_13535: AO356_13535 - phosphoribosyl-dephospho-CoA transferase, at 3,069,484 to 3,070,107 _13535 Position (kb) 3067 3068 3069Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3066.983 kb on - strand, within AO356_13515at 3067.071 kb on - strand, within AO356_13515at 3067.324 kb on - strand, within AO356_13515at 3067.509 kb on - strandat 3067.557 kb on + strandat 3068.274 kb on + strand, within AO356_13525at 3068.274 kb on + strand, within AO356_13525at 3068.275 kb on - strand, within AO356_13525at 3068.275 kb on - strand, within AO356_13525at 3068.275 kb on - strand, within AO356_13525at 3068.352 kb on + strand, within AO356_13525at 3068.353 kb on - strand, within AO356_13525at 3068.353 kb on - strand, within AO356_13525at 3068.431 kb on - strand, within AO356_13525at 3068.585 kb on + strand, within AO356_13525at 3068.670 kb on + strandat 3068.670 kb on + strandat 3068.670 kb on + strandat 3068.670 kb on + strandat 3068.671 kb on - strandat 3068.671 kb on - strandat 3068.696 kb on + strandat 3068.696 kb on + strandat 3068.696 kb on + strandat 3068.697 kb on - strandat 3068.697 kb on - strandat 3068.697 kb on - strandat 3068.697 kb on - strandat 3068.697 kb on - strandat 3068.973 kb on + strand, within AO356_13530at 3068.974 kb on - strand, within AO356_13530at 3068.974 kb on - strand, within AO356_13530at 3068.987 kb on + strand, within AO356_13530at 3068.988 kb on - strand, within AO356_13530at 3068.988 kb on - strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.047 kb on + strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.048 kb on - strand, within AO356_13530at 3069.269 kb on + strand, within AO356_13530at 3069.269 kb on + strand, within AO356_13530at 3069.668 kb on - strand, within AO356_13535

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,066,983 - AO356_13515 0.36 +0.4
3,067,071 - AO356_13515 0.46 -0.2
3,067,324 - AO356_13515 0.74 +0.8
3,067,509 - -0.6
3,067,557 + -2.2
3,068,274 + AO356_13525 0.51 -0.5
3,068,274 + AO356_13525 0.51 +0.8
3,068,275 - AO356_13525 0.51 +0.4
3,068,275 - AO356_13525 0.51 -1.2
3,068,275 - AO356_13525 0.51 -1.2
3,068,352 + AO356_13525 0.60 -0.2
3,068,353 - AO356_13525 0.60 -1.5
3,068,353 - AO356_13525 0.60 +2.8
3,068,431 - AO356_13525 0.69 -1.5
3,068,585 + AO356_13525 0.88 -0.6
3,068,670 + +0.8
3,068,670 + -0.2
3,068,670 + +1.8
3,068,670 + -0.2
3,068,671 - +0.8
3,068,671 - +0.6
3,068,696 + -0.2
3,068,696 + -1.2
3,068,696 + -0.2
3,068,697 - -1.5
3,068,697 - +0.8
3,068,697 - -0.6
3,068,697 - -1.7
3,068,697 - -2.5
3,068,973 + AO356_13530 0.36 -0.2
3,068,974 - AO356_13530 0.36 +1.4
3,068,974 - AO356_13530 0.36 +1.4
3,068,987 + AO356_13530 0.37 -0.2
3,068,988 - AO356_13530 0.37 +0.3
3,068,988 - AO356_13530 0.37 -1.2
3,069,047 + AO356_13530 0.45 -0.2
3,069,047 + AO356_13530 0.45 -1.2
3,069,047 + AO356_13530 0.45 -1.2
3,069,047 + AO356_13530 0.45 -0.2
3,069,047 + AO356_13530 0.45 -0.2
3,069,047 + AO356_13530 0.45 -1.2
3,069,047 + AO356_13530 0.45 -0.2
3,069,047 + AO356_13530 0.45 +0.8
3,069,048 - AO356_13530 0.45 -0.2
3,069,048 - AO356_13530 0.45 -0.5
3,069,048 - AO356_13530 0.45 -0.2
3,069,048 - AO356_13530 0.45 -0.2
3,069,048 - AO356_13530 0.45 +0.4
3,069,048 - AO356_13530 0.45 -1.2
3,069,048 - AO356_13530 0.45 +1.4
3,069,048 - AO356_13530 0.45 +1.4
3,069,048 - AO356_13530 0.45 +0.8
3,069,048 - AO356_13530 0.45 +0.6
3,069,048 - AO356_13530 0.45 +3.2
3,069,048 - AO356_13530 0.45 +0.4
3,069,048 - AO356_13530 0.45 +0.6
3,069,048 - AO356_13530 0.45 +0.6
3,069,048 - AO356_13530 0.45 +0.1
3,069,048 - AO356_13530 0.45 +0.8
3,069,048 - AO356_13530 0.45 +0.8
3,069,048 - AO356_13530 0.45 -0.2
3,069,269 + AO356_13530 0.72 -1.7
3,069,269 + AO356_13530 0.72 -0.2
3,069,668 - AO356_13535 0.29 -0.2

Or see this region's nucleotide sequence