Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13240

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13230 and AO356_13235 are separated by 86 nucleotidesAO356_13235 and AO356_13240 are separated by 116 nucleotidesAO356_13240 and AO356_13245 are separated by 242 nucleotides AO356_13230: AO356_13230 - hypothetical protein, at 3,007,731 to 3,009,098 _13230 AO356_13235: AO356_13235 - diacylglycerol kinase, at 3,009,185 to 3,009,697 _13235 AO356_13240: AO356_13240 - L-cystine transporter tcyP, at 3,009,814 to 3,011,205 _13240 AO356_13245: AO356_13245 - phosphorylcholine phosphatase, at 3,011,448 to 3,012,503 _13245 Position (kb) 3009 3010 3011 3012Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3009.172 kb on + strandat 3009.695 kb on + strandat 3009.695 kb on + strandat 3009.696 kb on - strandat 3009.696 kb on - strandat 3009.696 kb on - strandat 3010.188 kb on + strand, within AO356_13240at 3010.403 kb on + strand, within AO356_13240at 3010.403 kb on + strand, within AO356_13240at 3010.403 kb on + strand, within AO356_13240at 3010.404 kb on - strand, within AO356_13240at 3010.490 kb on + strand, within AO356_13240at 3010.491 kb on - strand, within AO356_13240at 3010.746 kb on - strand, within AO356_13240at 3010.987 kb on + strand, within AO356_13240at 3010.987 kb on + strand, within AO356_13240at 3010.987 kb on + strand, within AO356_13240at 3010.988 kb on - strand, within AO356_13240at 3010.988 kb on - strand, within AO356_13240at 3010.988 kb on - strand, within AO356_13240at 3010.991 kb on + strand, within AO356_13240at 3010.991 kb on + strand, within AO356_13240at 3010.992 kb on - strand, within AO356_13240at 3010.992 kb on - strand, within AO356_13240at 3010.992 kb on - strand, within AO356_13240at 3011.054 kb on + strand, within AO356_13240at 3011.054 kb on + strand, within AO356_13240at 3011.054 kb on + strand, within AO356_13240at 3011.055 kb on - strand, within AO356_13240at 3011.055 kb on - strand, within AO356_13240at 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.133 kb on + strandat 3011.134 kb on - strandat 3011.134 kb on - strandat 3011.134 kb on - strandat 3011.134 kb on - strandat 3011.134 kb on - strandat 3011.173 kb on + strandat 3011.173 kb on + strandat 3011.267 kb on + strandat 3011.267 kb on + strandat 3011.267 kb on + strandat 3011.267 kb on + strandat 3011.268 kb on - strandat 3011.278 kb on + strandat 3011.278 kb on + strandat 3011.282 kb on + strandat 3011.291 kb on - strandat 3011.291 kb on - strandat 3011.308 kb on + strandat 3011.309 kb on - strandat 3011.327 kb on + strandat 3011.372 kb on + strandat 3011.372 kb on + strandat 3011.372 kb on + strandat 3011.372 kb on + strandat 3011.373 kb on - strandat 3011.373 kb on - strandat 3011.373 kb on - strandat 3011.373 kb on - strandat 3011.373 kb on - strandat 3011.373 kb on - strandat 3011.373 kb on - strandat 3011.588 kb on + strand, within AO356_13245at 3011.588 kb on + strand, within AO356_13245at 3011.589 kb on - strand, within AO356_13245at 3011.592 kb on + strand, within AO356_13245at 3011.592 kb on + strand, within AO356_13245at 3011.592 kb on + strand, within AO356_13245at 3011.593 kb on - strand, within AO356_13245at 3011.593 kb on - strand, within AO356_13245at 3011.593 kb on - strand, within AO356_13245at 3011.623 kb on - strand, within AO356_13245at 3011.757 kb on + strand, within AO356_13245at 3011.757 kb on + strand, within AO356_13245at 3011.758 kb on - strand, within AO356_13245at 3011.758 kb on - strand, within AO356_13245at 3011.758 kb on - strand, within AO356_13245at 3011.760 kb on + strand, within AO356_13245at 3011.760 kb on + strand, within AO356_13245at 3011.760 kb on + strand, within AO356_13245at 3011.760 kb on + strand, within AO356_13245at 3011.760 kb on + strand, within AO356_13245at 3011.760 kb on + strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.761 kb on - strand, within AO356_13245at 3011.764 kb on - strand, within AO356_13245at 3011.764 kb on - strand, within AO356_13245at 3011.797 kb on - strand, within AO356_13245at 3011.829 kb on - strand, within AO356_13245at 3011.850 kb on + strand, within AO356_13245at 3011.850 kb on + strand, within AO356_13245at 3011.851 kb on - strand, within AO356_13245at 3011.851 kb on - strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.895 kb on + strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.896 kb on - strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.898 kb on + strand, within AO356_13245at 3011.899 kb on - strand, within AO356_13245at 3011.899 kb on - strand, within AO356_13245at 3011.899 kb on - strand, within AO356_13245at 3011.899 kb on - strand, within AO356_13245at 3011.899 kb on - strand, within AO356_13245at 3011.899 kb on - strand, within AO356_13245at 3011.922 kb on + strand, within AO356_13245at 3011.967 kb on + strand, within AO356_13245at 3011.967 kb on + strand, within AO356_13245at 3011.968 kb on - strand, within AO356_13245at 3011.968 kb on - strand, within AO356_13245at 3011.968 kb on - strand, within AO356_13245at 3011.968 kb on - strand, within AO356_13245at 3012.000 kb on + strand, within AO356_13245at 3012.000 kb on + strand, within AO356_13245at 3012.000 kb on + strand, within AO356_13245at 3012.000 kb on + strand, within AO356_13245at 3012.000 kb on + strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.001 kb on - strand, within AO356_13245at 3012.031 kb on + strand, within AO356_13245at 3012.031 kb on + strand, within AO356_13245at 3012.031 kb on + strand, within AO356_13245at 3012.032 kb on - strand, within AO356_13245at 3012.032 kb on - strand, within AO356_13245at 3012.057 kb on + strand, within AO356_13245at 3012.058 kb on - strand, within AO356_13245at 3012.058 kb on - strand, within AO356_13245at 3012.063 kb on + strand, within AO356_13245at 3012.063 kb on + strand, within AO356_13245at 3012.165 kb on + strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.166 kb on - strand, within AO356_13245at 3012.195 kb on + strand, within AO356_13245at 3012.195 kb on + strand, within AO356_13245at 3012.195 kb on + strand, within AO356_13245at 3012.195 kb on + strand, within AO356_13245at 3012.195 kb on + strand, within AO356_13245at 3012.196 kb on - strand, within AO356_13245at 3012.196 kb on - strand, within AO356_13245at 3012.196 kb on - strand, within AO356_13245at 3012.196 kb on - strand, within AO356_13245at 3012.196 kb on - strand, within AO356_13245at 3012.196 kb on - strand, within AO356_13245at 3012.204 kb on + strand, within AO356_13245at 3012.205 kb on - strand, within AO356_13245at 3012.205 kb on - strand, within AO356_13245

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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3,009,172 + +0.8
3,009,695 + +0.2
3,009,695 + +0.2
3,009,696 - -0.7
3,009,696 - -1.2
3,009,696 - -0.4
3,010,188 + AO356_13240 0.27 +0.1
3,010,403 + AO356_13240 0.42 +0.1
3,010,403 + AO356_13240 0.42 -0.4
3,010,403 + AO356_13240 0.42 -0.0
3,010,404 - AO356_13240 0.42 -0.2
3,010,490 + AO356_13240 0.49 +0.4
3,010,491 - AO356_13240 0.49 +0.8
3,010,746 - AO356_13240 0.67 +2.4
3,010,987 + AO356_13240 0.84 -0.2
3,010,987 + AO356_13240 0.84 +0.6
3,010,987 + AO356_13240 0.84 +0.6
3,010,988 - AO356_13240 0.84 -0.2
3,010,988 - AO356_13240 0.84 +1.8
3,010,988 - AO356_13240 0.84 -0.0
3,010,991 + AO356_13240 0.85 +0.7
3,010,991 + AO356_13240 0.85 +0.3
3,010,992 - AO356_13240 0.85 +1.0
3,010,992 - AO356_13240 0.85 -0.2
3,010,992 - AO356_13240 0.85 -0.2
3,011,054 + AO356_13240 0.89 +2.4
3,011,054 + AO356_13240 0.89 +0.8
3,011,054 + AO356_13240 0.89 -1.7
3,011,055 - AO356_13240 0.89 -1.2
3,011,055 - AO356_13240 0.89 +0.8
3,011,133 + -0.2
3,011,133 + +1.4
3,011,133 + -0.2
3,011,133 + +0.4
3,011,133 + -0.4
3,011,133 + +0.7
3,011,133 + +0.7
3,011,133 + +0.6
3,011,133 + -2.5
3,011,133 + -0.6
3,011,133 + -0.2
3,011,133 + +0.9
3,011,133 + -1.7
3,011,133 + +1.4
3,011,133 + +0.8
3,011,133 + -0.4
3,011,134 - +0.3
3,011,134 - +2.2
3,011,134 - +1.4
3,011,134 - -0.2
3,011,134 - -0.6
3,011,173 + +1.8
3,011,173 + +0.4
3,011,267 + +0.7
3,011,267 + -1.2
3,011,267 + +1.4
3,011,267 + +3.0
3,011,268 - +0.4
3,011,278 + +0.8
3,011,278 + +0.8
3,011,282 + +0.6
3,011,291 - +2.2
3,011,291 - +0.4
3,011,308 + +0.6
3,011,309 - -0.9
3,011,327 + -0.6
3,011,372 + +1.8
3,011,372 + +0.5
3,011,372 + +0.8
3,011,372 + +0.3
3,011,373 - -0.2
3,011,373 - -0.5
3,011,373 - +0.8
3,011,373 - +1.8
3,011,373 - +1.4
3,011,373 - -0.9
3,011,373 - -0.2
3,011,588 + AO356_13245 0.13 -0.2
3,011,588 + AO356_13245 0.13 +0.3
3,011,589 - AO356_13245 0.13 +0.8
3,011,592 + AO356_13245 0.14 -1.7
3,011,592 + AO356_13245 0.14 +0.6
3,011,592 + AO356_13245 0.14 -0.2
3,011,593 - AO356_13245 0.14 -1.7
3,011,593 - AO356_13245 0.14 -1.0
3,011,593 - AO356_13245 0.14 +0.8
3,011,623 - AO356_13245 0.17 -0.2
3,011,757 + AO356_13245 0.29 -0.2
3,011,757 + AO356_13245 0.29 -1.5
3,011,758 - AO356_13245 0.29 -0.2
3,011,758 - AO356_13245 0.29 +0.3
3,011,758 - AO356_13245 0.29 +0.4
3,011,760 + AO356_13245 0.30 -1.0
3,011,760 + AO356_13245 0.30 -1.5
3,011,760 + AO356_13245 0.30 +1.3
3,011,760 + AO356_13245 0.30 +0.3
3,011,760 + AO356_13245 0.30 +0.7
3,011,760 + AO356_13245 0.30 +0.8
3,011,761 - AO356_13245 0.30 -0.4
3,011,761 - AO356_13245 0.30 -0.5
3,011,761 - AO356_13245 0.30 -2.5
3,011,761 - AO356_13245 0.30 +0.8
3,011,761 - AO356_13245 0.30 -0.2
3,011,761 - AO356_13245 0.30 +0.2
3,011,761 - AO356_13245 0.30 -0.2
3,011,761 - AO356_13245 0.30 +1.3
3,011,764 - AO356_13245 0.30 -0.6
3,011,764 - AO356_13245 0.30 -0.6
3,011,797 - AO356_13245 0.33 -1.7
3,011,829 - AO356_13245 0.36 +0.7
3,011,850 + AO356_13245 0.38 -0.4
3,011,850 + AO356_13245 0.38 +1.2
3,011,851 - AO356_13245 0.38 +0.3
3,011,851 - AO356_13245 0.38 -0.2
3,011,895 + AO356_13245 0.42 -0.2
3,011,895 + AO356_13245 0.42 +0.2
3,011,895 + AO356_13245 0.42 +0.3
3,011,895 + AO356_13245 0.42 -0.9
3,011,895 + AO356_13245 0.42 +0.8
3,011,895 + AO356_13245 0.42 +0.7
3,011,895 + AO356_13245 0.42 +1.2
3,011,895 + AO356_13245 0.42 +1.0
3,011,895 + AO356_13245 0.42 -0.2
3,011,895 + AO356_13245 0.42 -0.0
3,011,895 + AO356_13245 0.42 -0.2
3,011,896 - AO356_13245 0.42 +0.4
3,011,896 - AO356_13245 0.42 -0.2
3,011,896 - AO356_13245 0.42 -0.2
3,011,896 - AO356_13245 0.42 +0.3
3,011,896 - AO356_13245 0.42 +0.8
3,011,896 - AO356_13245 0.42 +1.4
3,011,896 - AO356_13245 0.42 -0.2
3,011,896 - AO356_13245 0.42 -2.2
3,011,898 + AO356_13245 0.43 -0.6
3,011,898 + AO356_13245 0.43 -0.5
3,011,898 + AO356_13245 0.43 +0.5
3,011,898 + AO356_13245 0.43 -0.2
3,011,898 + AO356_13245 0.43 -1.2
3,011,898 + AO356_13245 0.43 +2.2
3,011,898 + AO356_13245 0.43 +0.5
3,011,898 + AO356_13245 0.43 +1.4
3,011,899 - AO356_13245 0.43 -2.2
3,011,899 - AO356_13245 0.43 +0.9
3,011,899 - AO356_13245 0.43 +0.8
3,011,899 - AO356_13245 0.43 -0.6
3,011,899 - AO356_13245 0.43 +1.2
3,011,899 - AO356_13245 0.43 +0.8
3,011,922 + AO356_13245 0.45 -1.2
3,011,967 + AO356_13245 0.49 +0.6
3,011,967 + AO356_13245 0.49 +1.2
3,011,968 - AO356_13245 0.49 +0.3
3,011,968 - AO356_13245 0.49 +0.4
3,011,968 - AO356_13245 0.49 -1.2
3,011,968 - AO356_13245 0.49 +0.3
3,012,000 + AO356_13245 0.52 +0.8
3,012,000 + AO356_13245 0.52 +0.6
3,012,000 + AO356_13245 0.52 -1.2
3,012,000 + AO356_13245 0.52 -1.2
3,012,000 + AO356_13245 0.52 +1.2
3,012,001 - AO356_13245 0.52 -0.6
3,012,001 - AO356_13245 0.52 -0.7
3,012,001 - AO356_13245 0.52 -0.7
3,012,001 - AO356_13245 0.52 +0.4
3,012,001 - AO356_13245 0.52 -1.2
3,012,001 - AO356_13245 0.52 +0.7
3,012,001 - AO356_13245 0.52 +0.7
3,012,001 - AO356_13245 0.52 +1.8
3,012,031 + AO356_13245 0.55 +0.0
3,012,031 + AO356_13245 0.55 -0.6
3,012,031 + AO356_13245 0.55 +0.6
3,012,032 - AO356_13245 0.55 -0.5
3,012,032 - AO356_13245 0.55 -2.5
3,012,057 + AO356_13245 0.58 -0.2
3,012,058 - AO356_13245 0.58 -0.9
3,012,058 - AO356_13245 0.58 +0.6
3,012,063 + AO356_13245 0.58 -1.6
3,012,063 + AO356_13245 0.58 -0.7
3,012,165 + AO356_13245 0.68 -0.2
3,012,166 - AO356_13245 0.68 -0.9
3,012,166 - AO356_13245 0.68 +0.4
3,012,166 - AO356_13245 0.68 -1.7
3,012,166 - AO356_13245 0.68 +0.8
3,012,166 - AO356_13245 0.68 +0.1
3,012,166 - AO356_13245 0.68 +0.4
3,012,166 - AO356_13245 0.68 +0.8
3,012,166 - AO356_13245 0.68 -1.7
3,012,195 + AO356_13245 0.71 -1.2
3,012,195 + AO356_13245 0.71 +0.4
3,012,195 + AO356_13245 0.71 +1.3
3,012,195 + AO356_13245 0.71 +0.0
3,012,195 + AO356_13245 0.71 -0.2
3,012,196 - AO356_13245 0.71 +0.8
3,012,196 - AO356_13245 0.71 -0.7
3,012,196 - AO356_13245 0.71 -1.5
3,012,196 - AO356_13245 0.71 +0.8
3,012,196 - AO356_13245 0.71 -0.2
3,012,196 - AO356_13245 0.71 -0.3
3,012,204 + AO356_13245 0.72 +0.1
3,012,205 - AO356_13245 0.72 -0.2
3,012,205 - AO356_13245 0.72 -0.2

Or see this region's nucleotide sequence