Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09340 and AO356_09345 overlap by 4 nucleotides AO356_09345 and AO356_09350 are separated by 8 nucleotides AO356_09350 and AO356_09355 overlap by 4 nucleotides
AO356_09340: AO356_09340 - type II secretion system protein GspE, at 2,110,008 to 2,111,471
_09340
AO356_09345: AO356_09345 - type II secretion system protein GspD, at 2,111,468 to 2,113,393
_09345
AO356_09350: AO356_09350 - hypothetical protein, at 2,113,402 to 2,113,929
_09350
AO356_09355: AO356_09355 - cytochrome B, at 2,113,926 to 2,114,468
_09355
Position (kb)
2111
2112
2113
2114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2110.627 kb on + strand, within AO356_09340 at 2110.627 kb on + strand, within AO356_09340 at 2110.627 kb on + strand, within AO356_09340 at 2110.694 kb on - strand, within AO356_09340 at 2111.068 kb on + strand, within AO356_09340 at 2111.068 kb on + strand, within AO356_09340 at 2111.068 kb on + strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.322 kb on + strand, within AO356_09340 at 2111.322 kb on + strand, within AO356_09340 at 2111.322 kb on + strand, within AO356_09340 at 2111.323 kb on - strand, within AO356_09340 at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.610 kb on + strand at 2111.730 kb on + strand, within AO356_09345 at 2111.730 kb on + strand, within AO356_09345 at 2111.737 kb on + strand, within AO356_09345 at 2111.737 kb on + strand, within AO356_09345 at 2111.737 kb on + strand, within AO356_09345 at 2111.738 kb on - strand, within AO356_09345 at 2111.952 kb on + strand, within AO356_09345 at 2111.952 kb on + strand, within AO356_09345 at 2111.952 kb on + strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.974 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.326 kb on - strand, within AO356_09345 at 2112.326 kb on - strand, within AO356_09345 at 2112.326 kb on - strand, within AO356_09345 at 2112.530 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.890 kb on + strand, within AO356_09345 at 2112.891 kb on - strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.925 kb on - strand, within AO356_09345 at 2113.134 kb on + strand, within AO356_09345 at 2113.134 kb on + strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.429 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.611 kb on - strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.988 kb on + strand, within AO356_09355 at 2113.989 kb on - strand, within AO356_09355 at 2113.989 kb on - strand, within AO356_09355 at 2114.197 kb on + strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 2,110,627 + AO356_09340 0.42 +0.4 2,110,627 + AO356_09340 0.42 +1.4 2,110,627 + AO356_09340 0.42 -0.2 2,110,694 - AO356_09340 0.47 +0.1 2,111,068 + AO356_09340 0.72 +0.4 2,111,068 + AO356_09340 0.72 -1.2 2,111,068 + AO356_09340 0.72 +0.8 2,111,069 - AO356_09340 0.72 -1.2 2,111,069 - AO356_09340 0.72 -0.2 2,111,069 - AO356_09340 0.72 +0.8 2,111,069 - AO356_09340 0.72 +1.4 2,111,069 - AO356_09340 0.72 -0.8 2,111,322 + AO356_09340 0.90 -0.2 2,111,322 + AO356_09340 0.90 +0.4 2,111,322 + AO356_09340 0.90 +0.8 2,111,323 - AO356_09340 0.90 +0.6 2,111,328 + +0.8 2,111,328 + -1.2 2,111,328 + +2.6 2,111,328 + +0.8 2,111,328 + -0.2 2,111,329 - -2.2 2,111,329 - -1.2 2,111,329 - +0.8 2,111,329 - +1.0 2,111,329 - +1.6 2,111,329 - -0.6 2,111,610 + +2.2 2,111,730 + AO356_09345 0.14 -1.2 2,111,730 + AO356_09345 0.14 -0.2 2,111,737 + AO356_09345 0.14 +0.4 2,111,737 + AO356_09345 0.14 +0.8 2,111,737 + AO356_09345 0.14 +0.8 2,111,738 - AO356_09345 0.14 +0.4 2,111,952 + AO356_09345 0.25 -3.2 2,111,952 + AO356_09345 0.25 -0.2 2,111,952 + AO356_09345 0.25 +0.8 2,111,953 - AO356_09345 0.25 -0.2 2,111,953 - AO356_09345 0.25 -0.2 2,111,953 - AO356_09345 0.25 -0.2 2,111,953 - AO356_09345 0.25 -0.2 2,111,953 - AO356_09345 0.25 -0.2 2,111,974 + AO356_09345 0.26 +0.1 2,112,325 + AO356_09345 0.44 -0.2 2,112,325 + AO356_09345 0.44 -0.2 2,112,325 + AO356_09345 0.44 +1.4 2,112,325 + AO356_09345 0.44 -0.2 2,112,326 - AO356_09345 0.45 -0.2 2,112,326 - AO356_09345 0.45 -0.2 2,112,326 - AO356_09345 0.45 -1.2 2,112,530 - AO356_09345 0.55 +0.4 2,112,552 - AO356_09345 0.56 -0.2 2,112,552 - AO356_09345 0.56 -0.6 2,112,552 - AO356_09345 0.56 -0.2 2,112,552 - AO356_09345 0.56 +1.6 2,112,890 + AO356_09345 0.74 +0.4 2,112,891 - AO356_09345 0.74 -0.2 2,112,924 + AO356_09345 0.76 +0.2 2,112,924 + AO356_09345 0.76 +0.4 2,112,924 + AO356_09345 0.76 +0.8 2,112,925 - AO356_09345 0.76 +0.8 2,113,134 + AO356_09345 0.87 -1.2 2,113,134 + AO356_09345 0.87 +2.2 2,113,135 - AO356_09345 0.87 +0.8 2,113,135 - AO356_09345 0.87 +0.8 2,113,135 - AO356_09345 0.87 -1.8 2,113,429 + -0.2 2,113,433 + -0.2 2,113,433 + -1.2 2,113,433 + +1.2 2,113,433 + -0.2 2,113,433 + -0.2 2,113,434 - +2.2 2,113,434 - +0.2 2,113,434 - +0.6 2,113,434 - -0.2 2,113,434 - -0.2 2,113,434 - -0.2 2,113,434 - -0.2 2,113,611 - AO356_09350 0.40 -0.8 2,113,862 + AO356_09350 0.87 -1.8 2,113,862 + AO356_09350 0.87 +0.4 2,113,862 + AO356_09350 0.87 -1.6 2,113,988 + AO356_09355 0.11 +0.2 2,113,989 - AO356_09355 0.12 +0.6 2,113,989 - AO356_09355 0.12 -0.2 2,114,197 + AO356_09355 0.50 -0.2 2,114,198 - AO356_09355 0.50 +0.4 2,114,198 - AO356_09355 0.50 +1.8 2,114,198 - AO356_09355 0.50 +0.8
Or see this region's nucleotide sequence