Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09220

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09210 and AO356_09215 overlap by 4 nucleotidesAO356_09215 and AO356_09220 overlap by 4 nucleotidesAO356_09220 and AO356_09225 overlap by 1 nucleotides AO356_09210: AO356_09210 - 3-oxoacyl-ACP synthase, at 2,081,927 to 2,083,123 _09210 AO356_09215: AO356_09215 - 3-hydroxylacyl-ACP dehydratase, at 2,083,120 to 2,083,587 _09215 AO356_09220: AO356_09220 - 3-ketoacyl-ACP reductase, at 2,083,584 to 2,084,312 _09220 AO356_09225: AO356_09225 - 3-oxoacyl-ACP synthase, at 2,084,312 to 2,085,538 _09225 Position (kb) 2083 2084 2085Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2082.677 kb on - strand, within AO356_09210at 2082.677 kb on - strand, within AO356_09210at 2082.767 kb on + strand, within AO356_09210at 2082.767 kb on + strand, within AO356_09210at 2082.768 kb on - strand, within AO356_09210at 2083.345 kb on - strand, within AO356_09215at 2083.550 kb on - strandat 2083.550 kb on - strandat 2083.550 kb on - strandat 2083.550 kb on - strandat 2083.827 kb on + strand, within AO356_09220at 2083.827 kb on + strand, within AO356_09220at 2083.929 kb on + strand, within AO356_09220at 2083.929 kb on + strand, within AO356_09220at 2083.930 kb on - strand, within AO356_09220at 2083.930 kb on - strand, within AO356_09220at 2083.936 kb on + strand, within AO356_09220at 2083.936 kb on + strand, within AO356_09220at 2083.936 kb on + strand, within AO356_09220at 2083.936 kb on + strand, within AO356_09220at 2083.936 kb on + strand, within AO356_09220at 2083.936 kb on + strand, within AO356_09220at 2083.937 kb on - strand, within AO356_09220at 2083.937 kb on - strand, within AO356_09220at 2083.937 kb on - strand, within AO356_09220at 2083.937 kb on - strand, within AO356_09220at 2084.040 kb on + strand, within AO356_09220at 2084.040 kb on + strand, within AO356_09220at 2084.040 kb on + strand, within AO356_09220at 2084.040 kb on + strand, within AO356_09220at 2084.040 kb on + strand, within AO356_09220at 2084.041 kb on - strand, within AO356_09220at 2084.041 kb on - strand, within AO356_09220at 2084.041 kb on - strand, within AO356_09220at 2084.041 kb on - strand, within AO356_09220at 2084.041 kb on - strand, within AO356_09220at 2084.041 kb on - strand, within AO356_09220at 2084.168 kb on - strand, within AO356_09220at 2084.269 kb on - strandat 2084.714 kb on + strand, within AO356_09225at 2084.715 kb on - strand, within AO356_09225at 2084.715 kb on - strand, within AO356_09225at 2084.715 kb on - strand, within AO356_09225at 2084.715 kb on - strand, within AO356_09225at 2084.834 kb on + strand, within AO356_09225at 2084.834 kb on + strand, within AO356_09225at 2084.834 kb on + strand, within AO356_09225at 2084.835 kb on - strand, within AO356_09225at 2084.927 kb on + strand, within AO356_09225at 2085.201 kb on - strand, within AO356_09225

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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2,082,677 - AO356_09210 0.63 -1.2
2,082,677 - AO356_09210 0.63 -0.2
2,082,767 + AO356_09210 0.70 -0.2
2,082,767 + AO356_09210 0.70 -1.2
2,082,768 - AO356_09210 0.70 -0.2
2,083,345 - AO356_09215 0.48 -0.2
2,083,550 - -0.2
2,083,550 - -0.2
2,083,550 - -0.2
2,083,550 - -0.2
2,083,827 + AO356_09220 0.33 +2.4
2,083,827 + AO356_09220 0.33 -0.2
2,083,929 + AO356_09220 0.47 +1.4
2,083,929 + AO356_09220 0.47 -1.8
2,083,930 - AO356_09220 0.47 -1.2
2,083,930 - AO356_09220 0.47 -0.6
2,083,936 + AO356_09220 0.48 +2.6
2,083,936 + AO356_09220 0.48 -1.0
2,083,936 + AO356_09220 0.48 +2.2
2,083,936 + AO356_09220 0.48 -0.2
2,083,936 + AO356_09220 0.48 +0.8
2,083,936 + AO356_09220 0.48 -0.2
2,083,937 - AO356_09220 0.48 -0.2
2,083,937 - AO356_09220 0.48 +0.8
2,083,937 - AO356_09220 0.48 +0.8
2,083,937 - AO356_09220 0.48 +0.8
2,084,040 + AO356_09220 0.63 -0.2
2,084,040 + AO356_09220 0.63 +0.8
2,084,040 + AO356_09220 0.63 +0.2
2,084,040 + AO356_09220 0.63 -1.2
2,084,040 + AO356_09220 0.63 +0.8
2,084,041 - AO356_09220 0.63 -0.2
2,084,041 - AO356_09220 0.63 -0.2
2,084,041 - AO356_09220 0.63 +0.8
2,084,041 - AO356_09220 0.63 -1.2
2,084,041 - AO356_09220 0.63 -1.2
2,084,041 - AO356_09220 0.63 -1.2
2,084,168 - AO356_09220 0.80 -1.2
2,084,269 - -0.2
2,084,714 + AO356_09225 0.33 -0.4
2,084,715 - AO356_09225 0.33 -0.2
2,084,715 - AO356_09225 0.33 +1.8
2,084,715 - AO356_09225 0.33 -0.5
2,084,715 - AO356_09225 0.33 -0.2
2,084,834 + AO356_09225 0.43 -0.2
2,084,834 + AO356_09225 0.43 +0.1
2,084,834 + AO356_09225 0.43 -0.5
2,084,835 - AO356_09225 0.43 +1.4
2,084,927 + AO356_09225 0.50 -2.8
2,085,201 - AO356_09225 0.72 -0.2

Or see this region's nucleotide sequence