Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08345

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08340 and AO356_08345 are separated by 158 nucleotidesAO356_08345 and AO356_08350 overlap by 1 nucleotides AO356_08340: AO356_08340 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,875,225 to 1,876,490 _08340 AO356_08345: AO356_08345 - urea ABC transporter permease, at 1,876,649 to 1,878,151 _08345 AO356_08350: AO356_08350 - urea ABC transporter permease subunit UrtC, at 1,878,151 to 1,879,227 _08350 Position (kb) 1876 1877 1878 1879Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1875.649 kb on - strand, within AO356_08340at 1875.649 kb on - strand, within AO356_08340at 1875.649 kb on - strand, within AO356_08340at 1875.693 kb on + strand, within AO356_08340at 1875.694 kb on - strand, within AO356_08340at 1875.729 kb on + strand, within AO356_08340at 1875.729 kb on + strand, within AO356_08340at 1875.729 kb on + strand, within AO356_08340at 1875.750 kb on + strand, within AO356_08340at 1875.750 kb on + strand, within AO356_08340at 1875.750 kb on + strand, within AO356_08340at 1875.750 kb on + strand, within AO356_08340at 1875.751 kb on - strand, within AO356_08340at 1875.751 kb on - strand, within AO356_08340at 1875.756 kb on + strand, within AO356_08340at 1875.834 kb on + strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.835 kb on - strand, within AO356_08340at 1875.951 kb on + strand, within AO356_08340at 1875.951 kb on + strand, within AO356_08340at 1875.952 kb on - strand, within AO356_08340at 1875.954 kb on - strand, within AO356_08340at 1875.991 kb on + strand, within AO356_08340at 1876.077 kb on + strand, within AO356_08340at 1876.077 kb on + strand, within AO356_08340at 1876.078 kb on - strand, within AO356_08340at 1876.078 kb on - strand, within AO356_08340at 1876.135 kb on - strand, within AO356_08340at 1876.200 kb on + strand, within AO356_08340at 1876.200 kb on + strand, within AO356_08340at 1876.201 kb on - strand, within AO356_08340at 1876.201 kb on - strand, within AO356_08340at 1876.201 kb on - strand, within AO356_08340at 1876.201 kb on - strand, within AO356_08340at 1876.309 kb on - strand, within AO356_08340at 1876.470 kb on + strandat 1876.471 kb on - strandat 1876.643 kb on + strandat 1876.643 kb on + strandat 1876.643 kb on + strandat 1876.643 kb on + strandat 1876.643 kb on + strandat 1876.643 kb on + strandat 1876.644 kb on - strandat 1876.644 kb on - strandat 1876.648 kb on + strandat 1876.648 kb on + strandat 1876.648 kb on + strandat 1876.648 kb on + strandat 1876.648 kb on + strandat 1876.649 kb on - strandat 1876.649 kb on - strandat 1876.649 kb on - strandat 1876.649 kb on - strandat 1876.649 kb on - strandat 1876.672 kb on + strandat 1877.037 kb on + strand, within AO356_08345at 1877.038 kb on - strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.281 kb on + strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.282 kb on - strand, within AO356_08345at 1877.330 kb on - strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.399 kb on + strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.400 kb on - strand, within AO356_08345at 1877.451 kb on - strand, within AO356_08345at 1877.451 kb on - strand, within AO356_08345at 1877.515 kb on + strand, within AO356_08345at 1877.691 kb on - strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.936 kb on + strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1877.937 kb on - strand, within AO356_08345at 1878.295 kb on + strand, within AO356_08350at 1878.295 kb on + strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.329 kb on - strand, within AO356_08350at 1878.368 kb on - strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.433 kb on + strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.434 kb on - strand, within AO356_08350at 1878.508 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.622 kb on + strand, within AO356_08350at 1878.895 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.967 kb on + strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1878.968 kb on - strand, within AO356_08350at 1879.136 kb on - strandat 1879.136 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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1,875,649 - AO356_08340 0.33 -0.3
1,875,649 - AO356_08340 0.33 +0.7
1,875,649 - AO356_08340 0.33 +1.0
1,875,693 + AO356_08340 0.37 -1.3
1,875,694 - AO356_08340 0.37 -2.6
1,875,729 + AO356_08340 0.40 +1.3
1,875,729 + AO356_08340 0.40 -0.3
1,875,729 + AO356_08340 0.40 -0.3
1,875,750 + AO356_08340 0.41 +0.9
1,875,750 + AO356_08340 0.41 +0.0
1,875,750 + AO356_08340 0.41 -0.3
1,875,750 + AO356_08340 0.41 +0.7
1,875,751 - AO356_08340 0.42 -0.9
1,875,751 - AO356_08340 0.42 -0.3
1,875,756 + AO356_08340 0.42 -1.3
1,875,834 + AO356_08340 0.48 +1.5
1,875,835 - AO356_08340 0.48 +0.5
1,875,835 - AO356_08340 0.48 -0.3
1,875,835 - AO356_08340 0.48 -0.3
1,875,835 - AO356_08340 0.48 -1.0
1,875,835 - AO356_08340 0.48 -0.8
1,875,835 - AO356_08340 0.48 -0.7
1,875,835 - AO356_08340 0.48 +0.3
1,875,835 - AO356_08340 0.48 -0.3
1,875,951 + AO356_08340 0.57 +0.0
1,875,951 + AO356_08340 0.57 +0.1
1,875,952 - AO356_08340 0.57 +1.3
1,875,954 - AO356_08340 0.58 +0.6
1,875,991 + AO356_08340 0.61 -1.0
1,876,077 + AO356_08340 0.67 -0.3
1,876,077 + AO356_08340 0.67 +1.1
1,876,078 - AO356_08340 0.67 -0.3
1,876,078 - AO356_08340 0.67 +0.1
1,876,135 - AO356_08340 0.72 +1.3
1,876,200 + AO356_08340 0.77 +0.7
1,876,200 + AO356_08340 0.77 +1.3
1,876,201 - AO356_08340 0.77 -1.3
1,876,201 - AO356_08340 0.77 -1.6
1,876,201 - AO356_08340 0.77 +1.3
1,876,201 - AO356_08340 0.77 +0.7
1,876,309 - AO356_08340 0.86 +0.7
1,876,470 + +1.7
1,876,471 - -0.6
1,876,643 + -0.3
1,876,643 + +0.7
1,876,643 + +0.7
1,876,643 + -0.3
1,876,643 + -0.9
1,876,643 + -0.9
1,876,644 - +0.7
1,876,644 - +0.7
1,876,648 + +1.5
1,876,648 + -0.3
1,876,648 + -0.3
1,876,648 + -0.3
1,876,648 + +0.7
1,876,649 - +2.0
1,876,649 - +0.4
1,876,649 - +0.7
1,876,649 - -1.3
1,876,649 - +1.3
1,876,672 + -1.3
1,877,037 + AO356_08345 0.26 -0.3
1,877,038 - AO356_08345 0.26 -0.7
1,877,281 + AO356_08345 0.42 -0.3
1,877,281 + AO356_08345 0.42 +2.5
1,877,281 + AO356_08345 0.42 -0.3
1,877,281 + AO356_08345 0.42 -0.3
1,877,281 + AO356_08345 0.42 -1.3
1,877,281 + AO356_08345 0.42 -1.3
1,877,282 - AO356_08345 0.42 +0.7
1,877,282 - AO356_08345 0.42 +1.3
1,877,282 - AO356_08345 0.42 +0.5
1,877,282 - AO356_08345 0.42 +0.7
1,877,330 - AO356_08345 0.45 -2.6
1,877,399 + AO356_08345 0.50 -0.9
1,877,399 + AO356_08345 0.50 +0.7
1,877,399 + AO356_08345 0.50 +0.3
1,877,399 + AO356_08345 0.50 -0.6
1,877,399 + AO356_08345 0.50 -0.3
1,877,399 + AO356_08345 0.50 +1.3
1,877,399 + AO356_08345 0.50 +1.3
1,877,399 + AO356_08345 0.50 +0.7
1,877,399 + AO356_08345 0.50 -1.3
1,877,400 - AO356_08345 0.50 -0.3
1,877,400 - AO356_08345 0.50 -2.3
1,877,400 - AO356_08345 0.50 +0.4
1,877,400 - AO356_08345 0.50 -0.5
1,877,400 - AO356_08345 0.50 +1.3
1,877,400 - AO356_08345 0.50 -1.9
1,877,400 - AO356_08345 0.50 -0.3
1,877,400 - AO356_08345 0.50 -0.3
1,877,400 - AO356_08345 0.50 +1.5
1,877,451 - AO356_08345 0.53 -0.3
1,877,451 - AO356_08345 0.53 +1.0
1,877,515 + AO356_08345 0.58 -0.3
1,877,691 - AO356_08345 0.69 +2.9
1,877,936 + AO356_08345 0.86 +2.0
1,877,936 + AO356_08345 0.86 -1.3
1,877,936 + AO356_08345 0.86 -0.5
1,877,936 + AO356_08345 0.86 -0.3
1,877,937 - AO356_08345 0.86 +0.7
1,877,937 - AO356_08345 0.86 -0.3
1,877,937 - AO356_08345 0.86 -0.3
1,877,937 - AO356_08345 0.86 +0.3
1,877,937 - AO356_08345 0.86 -0.3
1,878,295 + AO356_08350 0.13 -0.3
1,878,295 + AO356_08350 0.13 -0.3
1,878,329 - AO356_08350 0.17 +0.7
1,878,329 - AO356_08350 0.17 +1.3
1,878,329 - AO356_08350 0.17 +0.7
1,878,368 - AO356_08350 0.20 -0.3
1,878,433 + AO356_08350 0.26 +1.0
1,878,433 + AO356_08350 0.26 +0.9
1,878,433 + AO356_08350 0.26 -0.9
1,878,433 + AO356_08350 0.26 -2.2
1,878,433 + AO356_08350 0.26 -0.3
1,878,433 + AO356_08350 0.26 -0.3
1,878,433 + AO356_08350 0.26 -1.9
1,878,434 - AO356_08350 0.26 -1.3
1,878,434 - AO356_08350 0.26 -3.1
1,878,434 - AO356_08350 0.26 -0.3
1,878,434 - AO356_08350 0.26 +0.7
1,878,434 - AO356_08350 0.26 +1.3
1,878,434 - AO356_08350 0.26 -0.7
1,878,434 - AO356_08350 0.26 -0.3
1,878,434 - AO356_08350 0.26 -0.3
1,878,508 + AO356_08350 0.33 -0.3
1,878,622 + AO356_08350 0.44 -1.5
1,878,622 + AO356_08350 0.44 +0.2
1,878,622 + AO356_08350 0.44 -0.3
1,878,622 + AO356_08350 0.44 +1.0
1,878,895 + AO356_08350 0.69 +1.0
1,878,967 + AO356_08350 0.76 -0.3
1,878,967 + AO356_08350 0.76 +0.3
1,878,967 + AO356_08350 0.76 -0.3
1,878,967 + AO356_08350 0.76 -1.3
1,878,967 + AO356_08350 0.76 -0.3
1,878,968 - AO356_08350 0.76 +1.3
1,878,968 - AO356_08350 0.76 -3.5
1,878,968 - AO356_08350 0.76 -0.3
1,879,136 - +0.3
1,879,136 - +1.3

Or see this region's nucleotide sequence