Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08330 and AO356_08335 are separated by 191 nucleotides AO356_08335 and AO356_08340 are separated by 374 nucleotides
AO356_08330: AO356_08330 - TonB-dependent receptor, at 1,871,153 to 1,873,279
_08330
AO356_08335: AO356_08335 - peptidase, at 1,873,471 to 1,874,850
_08335
AO356_08340: AO356_08340 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,875,225 to 1,876,490
_08340
Position (kb) 1873
1874
1875 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1872.552 kb on - strand, within AO356_08330 at 1872.552 kb on - strand, within AO356_08330 at 1872.689 kb on + strand, within AO356_08330 at 1872.689 kb on + strand, within AO356_08330 at 1872.689 kb on + strand, within AO356_08330 at 1872.726 kb on - strand, within AO356_08330 at 1872.726 kb on - strand, within AO356_08330 at 1872.726 kb on - strand, within AO356_08330 at 1872.746 kb on + strand, within AO356_08330 at 1872.746 kb on + strand, within AO356_08330 at 1872.746 kb on + strand, within AO356_08330 at 1872.762 kb on - strand, within AO356_08330 at 1872.842 kb on + strand, within AO356_08330 at 1872.842 kb on + strand, within AO356_08330 at 1872.885 kb on - strand, within AO356_08330 at 1872.885 kb on - strand, within AO356_08330 at 1872.963 kb on - strand, within AO356_08330 at 1873.058 kb on + strand, within AO356_08330 at 1873.164 kb on - strand at 1873.228 kb on + strand at 1873.229 kb on - strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.437 kb on + strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.438 kb on - strand at 1873.495 kb on + strand at 1873.495 kb on + strand at 1873.495 kb on + strand at 1873.496 kb on - strand at 1873.523 kb on - strand at 1873.579 kb on + strand at 1873.579 kb on + strand at 1873.579 kb on + strand at 1873.579 kb on + strand at 1873.580 kb on - strand at 1873.580 kb on - strand at 1873.580 kb on - strand at 1873.612 kb on + strand, within AO356_08335 at 1873.612 kb on + strand, within AO356_08335 at 1873.613 kb on - strand, within AO356_08335 at 1873.613 kb on - strand, within AO356_08335 at 1873.674 kb on + strand, within AO356_08335 at 1873.674 kb on + strand, within AO356_08335 at 1873.674 kb on + strand, within AO356_08335 at 1873.675 kb on - strand, within AO356_08335 at 1873.675 kb on - strand, within AO356_08335 at 1873.714 kb on + strand, within AO356_08335 at 1873.714 kb on + strand, within AO356_08335 at 1873.715 kb on - strand, within AO356_08335 at 1873.951 kb on + strand, within AO356_08335 at 1873.951 kb on + strand, within AO356_08335 at 1873.952 kb on - strand, within AO356_08335 at 1874.125 kb on + strand, within AO356_08335 at 1874.237 kb on + strand, within AO356_08335 at 1874.237 kb on + strand, within AO356_08335 at 1874.237 kb on + strand, within AO356_08335 at 1874.245 kb on - strand, within AO356_08335 at 1874.473 kb on + strand, within AO356_08335 at 1874.473 kb on + strand, within AO356_08335 at 1874.474 kb on - strand, within AO356_08335 at 1874.474 kb on - strand, within AO356_08335 at 1874.512 kb on + strand, within AO356_08335 at 1874.512 kb on + strand, within AO356_08335 at 1874.512 kb on + strand, within AO356_08335 at 1874.513 kb on - strand, within AO356_08335 at 1874.513 kb on - strand, within AO356_08335 at 1874.513 kb on - strand, within AO356_08335 at 1874.957 kb on + strand at 1874.957 kb on + strand at 1874.957 kb on + strand at 1874.958 kb on - strand at 1874.958 kb on - strand at 1874.958 kb on - strand at 1874.958 kb on - strand at 1874.958 kb on - strand at 1875.040 kb on + strand at 1875.041 kb on - strand at 1875.204 kb on + strand at 1875.204 kb on + strand at 1875.204 kb on + strand at 1875.204 kb on + strand at 1875.205 kb on - strand at 1875.205 kb on - strand at 1875.205 kb on - strand at 1875.205 kb on - strand at 1875.205 kb on - strand at 1875.205 kb on - strand at 1875.236 kb on + strand at 1875.236 kb on + strand at 1875.236 kb on + strand at 1875.237 kb on - strand at 1875.237 kb on - strand at 1875.237 kb on - strand at 1875.237 kb on - strand at 1875.254 kb on + strand at 1875.254 kb on + strand at 1875.254 kb on + strand at 1875.255 kb on - strand at 1875.255 kb on - strand at 1875.326 kb on + strand at 1875.557 kb on + strand, within AO356_08340 at 1875.557 kb on + strand, within AO356_08340 at 1875.615 kb on + strand, within AO356_08340 at 1875.615 kb on + strand, within AO356_08340 at 1875.615 kb on + strand, within AO356_08340 at 1875.615 kb on + strand, within AO356_08340 at 1875.616 kb on - strand, within AO356_08340 at 1875.616 kb on - strand, within AO356_08340 at 1875.616 kb on - strand, within AO356_08340 at 1875.648 kb on + strand, within AO356_08340 at 1875.649 kb on - strand, within AO356_08340 at 1875.649 kb on - strand, within AO356_08340 at 1875.649 kb on - strand, within AO356_08340 at 1875.693 kb on + strand, within AO356_08340 at 1875.694 kb on - strand, within AO356_08340 at 1875.729 kb on + strand, within AO356_08340 at 1875.729 kb on + strand, within AO356_08340 at 1875.729 kb on + strand, within AO356_08340 at 1875.750 kb on + strand, within AO356_08340 at 1875.750 kb on + strand, within AO356_08340 at 1875.750 kb on + strand, within AO356_08340 at 1875.750 kb on + strand, within AO356_08340 at 1875.751 kb on - strand, within AO356_08340 at 1875.751 kb on - strand, within AO356_08340 at 1875.756 kb on + strand, within AO356_08340 at 1875.834 kb on + strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340 at 1875.835 kb on - strand, within AO356_08340
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3 remove 1,872,552 - AO356_08330 0.66 +1.7 1,872,552 - AO356_08330 0.66 -1.3 1,872,689 + AO356_08330 0.72 -0.3 1,872,689 + AO356_08330 0.72 -0.3 1,872,689 + AO356_08330 0.72 +0.7 1,872,726 - AO356_08330 0.74 +0.7 1,872,726 - AO356_08330 0.74 +0.5 1,872,726 - AO356_08330 0.74 +1.3 1,872,746 + AO356_08330 0.75 -0.3 1,872,746 + AO356_08330 0.75 -0.3 1,872,746 + AO356_08330 0.75 -0.3 1,872,762 - AO356_08330 0.76 -0.9 1,872,842 + AO356_08330 0.79 -0.3 1,872,842 + AO356_08330 0.79 +0.1 1,872,885 - AO356_08330 0.81 +0.3 1,872,885 - AO356_08330 0.81 +0.7 1,872,963 - AO356_08330 0.85 -0.3 1,873,058 + AO356_08330 0.90 +0.5 1,873,164 - +0.3 1,873,228 + -2.3 1,873,229 - +0.7 1,873,437 + +0.7 1,873,437 + -1.3 1,873,437 + +2.0 1,873,437 + +0.9 1,873,437 + +0.1 1,873,437 + +1.7 1,873,437 + -0.3 1,873,437 + +1.3 1,873,437 + +1.3 1,873,437 + -1.3 1,873,437 + +1.5 1,873,437 + +0.7 1,873,437 + +0.3 1,873,437 + -0.3 1,873,437 + -1.3 1,873,437 + +0.1 1,873,437 + +0.7 1,873,437 + +1.3 1,873,437 + -1.3 1,873,437 + +0.7 1,873,437 + -0.3 1,873,437 + +0.3 1,873,437 + -0.3 1,873,437 + +1.3 1,873,437 + -0.7 1,873,438 - -0.3 1,873,438 - +3.3 1,873,438 - +1.7 1,873,438 - +2.3 1,873,438 - -0.3 1,873,438 - -0.6 1,873,438 - -0.3 1,873,438 - -0.3 1,873,438 - +1.7 1,873,438 - +1.5 1,873,438 - +0.3 1,873,438 - +1.3 1,873,495 + +0.9 1,873,495 + -0.3 1,873,495 + +2.0 1,873,496 - +0.7 1,873,523 - +0.7 1,873,579 + +1.3 1,873,579 + +0.7 1,873,579 + +1.9 1,873,579 + -0.3 1,873,580 - +0.3 1,873,580 - -0.9 1,873,580 - -0.7 1,873,612 + AO356_08335 0.10 +2.3 1,873,612 + AO356_08335 0.10 +0.7 1,873,613 - AO356_08335 0.10 -0.5 1,873,613 - AO356_08335 0.10 +0.5 1,873,674 + AO356_08335 0.15 +0.5 1,873,674 + AO356_08335 0.15 +2.5 1,873,674 + AO356_08335 0.15 +1.3 1,873,675 - AO356_08335 0.15 -1.3 1,873,675 - AO356_08335 0.15 +0.7 1,873,714 + AO356_08335 0.18 +1.3 1,873,714 + AO356_08335 0.18 -0.7 1,873,715 - AO356_08335 0.18 -0.9 1,873,951 + AO356_08335 0.35 +0.2 1,873,951 + AO356_08335 0.35 -0.3 1,873,952 - AO356_08335 0.35 +1.3 1,874,125 + AO356_08335 0.47 +1.3 1,874,237 + AO356_08335 0.56 +1.3 1,874,237 + AO356_08335 0.56 +1.3 1,874,237 + AO356_08335 0.56 +2.7 1,874,245 - AO356_08335 0.56 +1.3 1,874,473 + AO356_08335 0.73 -0.1 1,874,473 + AO356_08335 0.73 -0.3 1,874,474 - AO356_08335 0.73 +1.7 1,874,474 - AO356_08335 0.73 +2.3 1,874,512 + AO356_08335 0.75 -0.1 1,874,512 + AO356_08335 0.75 +1.5 1,874,512 + AO356_08335 0.75 -0.0 1,874,513 - AO356_08335 0.76 +2.3 1,874,513 - AO356_08335 0.76 +1.3 1,874,513 - AO356_08335 0.76 +0.7 1,874,957 + +1.0 1,874,957 + -0.5 1,874,957 + -1.6 1,874,958 - +0.3 1,874,958 - -0.3 1,874,958 - +0.7 1,874,958 - -1.5 1,874,958 - +0.1 1,875,040 + -1.3 1,875,041 - +1.7 1,875,204 + +1.7 1,875,204 + -2.3 1,875,204 + -0.7 1,875,204 + +1.0 1,875,205 - +0.1 1,875,205 - -0.7 1,875,205 - -0.3 1,875,205 - -0.7 1,875,205 - -0.9 1,875,205 - +0.9 1,875,236 + +1.0 1,875,236 + +0.6 1,875,236 + -1.3 1,875,237 - -1.3 1,875,237 - -1.3 1,875,237 - +1.3 1,875,237 - -0.3 1,875,254 + -1.9 1,875,254 + +0.3 1,875,254 + -0.3 1,875,255 - -0.1 1,875,255 - +0.3 1,875,326 + -0.3 1,875,557 + AO356_08340 0.26 +0.7 1,875,557 + AO356_08340 0.26 -1.3 1,875,615 + AO356_08340 0.31 -0.3 1,875,615 + AO356_08340 0.31 +1.3 1,875,615 + AO356_08340 0.31 -0.3 1,875,615 + AO356_08340 0.31 -0.3 1,875,616 - AO356_08340 0.31 -0.3 1,875,616 - AO356_08340 0.31 +0.3 1,875,616 - AO356_08340 0.31 -1.0 1,875,648 + AO356_08340 0.33 -0.3 1,875,649 - AO356_08340 0.33 -0.3 1,875,649 - AO356_08340 0.33 +0.7 1,875,649 - AO356_08340 0.33 +1.0 1,875,693 + AO356_08340 0.37 -1.3 1,875,694 - AO356_08340 0.37 -2.6 1,875,729 + AO356_08340 0.40 +1.3 1,875,729 + AO356_08340 0.40 -0.3 1,875,729 + AO356_08340 0.40 -0.3 1,875,750 + AO356_08340 0.41 +0.9 1,875,750 + AO356_08340 0.41 +0.0 1,875,750 + AO356_08340 0.41 -0.3 1,875,750 + AO356_08340 0.41 +0.7 1,875,751 - AO356_08340 0.42 -0.9 1,875,751 - AO356_08340 0.42 -0.3 1,875,756 + AO356_08340 0.42 -1.3 1,875,834 + AO356_08340 0.48 +1.5 1,875,835 - AO356_08340 0.48 +0.5 1,875,835 - AO356_08340 0.48 -0.3 1,875,835 - AO356_08340 0.48 -0.3 1,875,835 - AO356_08340 0.48 -1.0 1,875,835 - AO356_08340 0.48 -0.8 1,875,835 - AO356_08340 0.48 -0.7 1,875,835 - AO356_08340 0.48 +0.3 1,875,835 - AO356_08340 0.48 -0.3
Or see this region's nucleotide sequence