Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06880

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06875 and AO356_06880 are separated by 514 nucleotidesAO356_06880 and AO356_06885 are separated by 136 nucleotides AO356_06875: AO356_06875 - mandelate racemase, at 1,517,208 to 1,518,362 _06875 AO356_06880: AO356_06880 - C4-dicarboxylate ABC transporter, at 1,518,877 to 1,519,872 _06880 AO356_06885: AO356_06885 - hypothetical protein, at 1,520,009 to 1,521,916 _06885 Position (kb) 1518 1519 1520Strain fitness (log2 ratio) -1 0 1 2 3at 1517.999 kb on + strand, within AO356_06875at 1518.000 kb on - strand, within AO356_06875at 1518.227 kb on + strand, within AO356_06875at 1518.228 kb on - strand, within AO356_06875at 1518.228 kb on - strand, within AO356_06875at 1518.362 kb on + strandat 1518.362 kb on + strandat 1518.362 kb on + strandat 1518.390 kb on + strandat 1518.613 kb on + strandat 1518.614 kb on - strandat 1518.653 kb on - strandat 1518.653 kb on - strandat 1518.800 kb on - strandat 1518.820 kb on + strandat 1518.820 kb on + strandat 1518.845 kb on - strandat 1518.845 kb on - strandat 1518.855 kb on + strandat 1518.891 kb on - strandat 1519.168 kb on + strand, within AO356_06880at 1519.168 kb on + strand, within AO356_06880at 1519.169 kb on - strand, within AO356_06880at 1519.169 kb on - strand, within AO356_06880at 1519.169 kb on - strand, within AO356_06880at 1519.169 kb on - strand, within AO356_06880at 1519.205 kb on + strand, within AO356_06880at 1519.205 kb on + strand, within AO356_06880at 1519.206 kb on - strand, within AO356_06880at 1519.206 kb on - strand, within AO356_06880at 1519.226 kb on + strand, within AO356_06880at 1519.227 kb on - strand, within AO356_06880at 1519.304 kb on - strand, within AO356_06880at 1519.304 kb on - strand, within AO356_06880at 1519.463 kb on - strand, within AO356_06880at 1519.503 kb on + strand, within AO356_06880at 1519.503 kb on + strand, within AO356_06880at 1519.503 kb on + strand, within AO356_06880at 1519.504 kb on - strand, within AO356_06880at 1519.504 kb on - strand, within AO356_06880at 1519.508 kb on - strand, within AO356_06880at 1519.508 kb on - strand, within AO356_06880at 1519.520 kb on - strand, within AO356_06880at 1519.549 kb on + strand, within AO356_06880at 1519.549 kb on + strand, within AO356_06880at 1519.550 kb on - strand, within AO356_06880at 1519.550 kb on - strand, within AO356_06880at 1519.550 kb on - strand, within AO356_06880at 1519.550 kb on - strand, within AO356_06880at 1519.550 kb on - strand, within AO356_06880at 1519.574 kb on + strand, within AO356_06880at 1519.575 kb on - strand, within AO356_06880at 1519.575 kb on - strand, within AO356_06880at 1519.582 kb on + strand, within AO356_06880at 1519.582 kb on + strand, within AO356_06880at 1519.582 kb on + strand, within AO356_06880at 1519.582 kb on + strand, within AO356_06880at 1519.583 kb on - strand, within AO356_06880at 1519.583 kb on - strand, within AO356_06880at 1519.583 kb on - strand, within AO356_06880at 1519.957 kb on - strandat 1519.957 kb on - strandat 1519.957 kb on - strandat 1519.969 kb on + strandat 1519.969 kb on + strandat 1520.038 kb on + strandat 1520.039 kb on - strandat 1520.270 kb on + strand, within AO356_06885at 1520.271 kb on - strand, within AO356_06885at 1520.325 kb on - strand, within AO356_06885at 1520.325 kb on - strand, within AO356_06885at 1520.325 kb on - strand, within AO356_06885at 1520.406 kb on - strand, within AO356_06885at 1520.502 kb on - strand, within AO356_06885at 1520.615 kb on + strand, within AO356_06885at 1520.615 kb on + strand, within AO356_06885at 1520.615 kb on + strand, within AO356_06885at 1520.633 kb on + strand, within AO356_06885at 1520.633 kb on + strand, within AO356_06885at 1520.633 kb on + strand, within AO356_06885at 1520.634 kb on - strand, within AO356_06885at 1520.634 kb on - strand, within AO356_06885at 1520.636 kb on + strand, within AO356_06885at 1520.777 kb on + strand, within AO356_06885at 1520.778 kb on - strand, within AO356_06885at 1520.778 kb on - strand, within AO356_06885

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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1,517,999 + AO356_06875 0.68 +0.6
1,518,000 - AO356_06875 0.69 +0.4
1,518,227 + AO356_06875 0.88 -1.0
1,518,228 - AO356_06875 0.88 +0.6
1,518,228 - AO356_06875 0.88 +0.6
1,518,362 + +0.4
1,518,362 + +1.6
1,518,362 + -0.4
1,518,390 + -0.0
1,518,613 + +1.1
1,518,614 - -0.4
1,518,653 - -0.4
1,518,653 - +1.0
1,518,800 - +0.1
1,518,820 + +0.7
1,518,820 + +0.1
1,518,845 - +0.6
1,518,845 - +0.6
1,518,855 + +0.9
1,518,891 - +3.6
1,519,168 + AO356_06880 0.29 +0.1
1,519,168 + AO356_06880 0.29 -0.4
1,519,169 - AO356_06880 0.29 +0.3
1,519,169 - AO356_06880 0.29 +1.3
1,519,169 - AO356_06880 0.29 +0.4
1,519,169 - AO356_06880 0.29 +0.9
1,519,205 + AO356_06880 0.33 +0.6
1,519,205 + AO356_06880 0.33 +0.7
1,519,206 - AO356_06880 0.33 +1.1
1,519,206 - AO356_06880 0.33 +1.1
1,519,226 + AO356_06880 0.35 +1.1
1,519,227 - AO356_06880 0.35 -0.4
1,519,304 - AO356_06880 0.43 +1.1
1,519,304 - AO356_06880 0.43 +0.8
1,519,463 - AO356_06880 0.59 -0.9
1,519,503 + AO356_06880 0.63 -0.4
1,519,503 + AO356_06880 0.63 -0.4
1,519,503 + AO356_06880 0.63 +1.1
1,519,504 - AO356_06880 0.63 -1.2
1,519,504 - AO356_06880 0.63 -0.0
1,519,508 - AO356_06880 0.63 +0.7
1,519,508 - AO356_06880 0.63 +0.6
1,519,520 - AO356_06880 0.65 -0.4
1,519,549 + AO356_06880 0.67 +2.4
1,519,549 + AO356_06880 0.67 +0.6
1,519,550 - AO356_06880 0.68 -0.4
1,519,550 - AO356_06880 0.68 +0.4
1,519,550 - AO356_06880 0.68 +0.6
1,519,550 - AO356_06880 0.68 -1.4
1,519,550 - AO356_06880 0.68 +0.6
1,519,574 + AO356_06880 0.70 -0.6
1,519,575 - AO356_06880 0.70 +0.9
1,519,575 - AO356_06880 0.70 +1.4
1,519,582 + AO356_06880 0.71 +0.0
1,519,582 + AO356_06880 0.71 -1.0
1,519,582 + AO356_06880 0.71 -0.3
1,519,582 + AO356_06880 0.71 +1.0
1,519,583 - AO356_06880 0.71 -0.4
1,519,583 - AO356_06880 0.71 +1.0
1,519,583 - AO356_06880 0.71 +1.4
1,519,957 - -0.2
1,519,957 - -0.4
1,519,957 - -1.0
1,519,969 + -1.4
1,519,969 + +0.3
1,520,038 + -0.0
1,520,039 - -0.4
1,520,270 + AO356_06885 0.14 +0.6
1,520,271 - AO356_06885 0.14 +1.6
1,520,325 - AO356_06885 0.17 -0.1
1,520,325 - AO356_06885 0.17 -0.7
1,520,325 - AO356_06885 0.17 +0.3
1,520,406 - AO356_06885 0.21 +0.6
1,520,502 - AO356_06885 0.26 +1.0
1,520,615 + AO356_06885 0.32 -0.0
1,520,615 + AO356_06885 0.32 +1.1
1,520,615 + AO356_06885 0.32 +2.1
1,520,633 + AO356_06885 0.33 -0.0
1,520,633 + AO356_06885 0.33 +0.6
1,520,633 + AO356_06885 0.33 -0.4
1,520,634 - AO356_06885 0.33 +1.7
1,520,634 - AO356_06885 0.33 +1.6
1,520,636 + AO356_06885 0.33 +0.1
1,520,777 + AO356_06885 0.40 +1.6
1,520,778 - AO356_06885 0.40 +1.7
1,520,778 - AO356_06885 0.40 +0.9

Or see this region's nucleotide sequence