Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06845

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06835 and AO356_06840 are separated by 97 nucleotidesAO356_06840 and AO356_06845 are separated by 122 nucleotidesAO356_06845 and AO356_06850 are separated by 131 nucleotidesAO356_06850 and AO356_06855 are separated by 10 nucleotides AO356_06835: AO356_06835 - GntR family transcriptional regulator, at 1,509,375 to 1,510,088 _06835 AO356_06840: AO356_06840 - GntR family transcriptional regulator, at 1,510,186 to 1,510,929 _06840 AO356_06845: AO356_06845 - porin, at 1,511,052 to 1,511,774 _06845 AO356_06850: AO356_06850 - peptide ABC transporter ATP-binding protein, at 1,511,906 to 1,512,673 _06850 AO356_06855: AO356_06855 - peptide ABC transporter ATP-binding protein, at 1,512,684 to 1,513,523 _06855 Position (kb) 1511 1512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1510.095 kb on + strandat 1510.096 kb on - strandat 1510.124 kb on + strandat 1510.125 kb on - strandat 1510.126 kb on + strandat 1510.127 kb on - strandat 1510.127 kb on - strandat 1510.153 kb on + strandat 1510.153 kb on + strandat 1510.153 kb on + strandat 1510.154 kb on - strandat 1510.155 kb on + strandat 1510.155 kb on + strandat 1510.155 kb on + strandat 1510.156 kb on - strandat 1510.156 kb on - strandat 1510.203 kb on - strandat 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.314 kb on + strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.315 kb on - strand, within AO356_06840at 1510.678 kb on + strand, within AO356_06840at 1510.678 kb on + strand, within AO356_06840at 1510.678 kb on + strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.679 kb on - strand, within AO356_06840at 1510.681 kb on + strand, within AO356_06840at 1510.682 kb on - strand, within AO356_06840at 1510.692 kb on + strand, within AO356_06840at 1510.748 kb on - strand, within AO356_06840at 1510.774 kb on + strand, within AO356_06840at 1510.775 kb on - strand, within AO356_06840at 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.858 kb on + strandat 1510.859 kb on - strandat 1510.859 kb on - strandat 1510.919 kb on - strandat 1510.919 kb on - strandat 1510.927 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.123 kb on + strandat 1511.123 kb on + strandat 1511.167 kb on + strand, within AO356_06845at 1511.167 kb on + strand, within AO356_06845at 1511.168 kb on - strand, within AO356_06845at 1511.191 kb on + strand, within AO356_06845at 1511.192 kb on - strand, within AO356_06845at 1511.210 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.236 kb on + strand, within AO356_06845at 1511.237 kb on - strand, within AO356_06845at 1511.237 kb on - strand, within AO356_06845at 1511.249 kb on - strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.255 kb on - strand, within AO356_06845at 1511.278 kb on + strand, within AO356_06845at 1511.287 kb on + strand, within AO356_06845at 1511.287 kb on + strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.378 kb on - strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.444 kb on - strand, within AO356_06845at 1511.519 kb on - strand, within AO356_06845at 1511.593 kb on + strand, within AO356_06845at 1511.594 kb on - strand, within AO356_06845at 1511.594 kb on - strand, within AO356_06845at 1511.681 kb on - strand, within AO356_06845at 1511.691 kb on + strand, within AO356_06845at 1511.691 kb on + strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.699 kb on + strand, within AO356_06845at 1511.700 kb on - strand, within AO356_06845at 1511.700 kb on - strand, within AO356_06845at 1511.701 kb on + strand, within AO356_06845at 1511.702 kb on - strandat 1511.702 kb on - strandat 1511.782 kb on + strandat 1511.791 kb on + strandat 1511.791 kb on + strandat 1511.792 kb on - strandat 1511.792 kb on - strandat 1511.792 kb on - strandat 1511.800 kb on + strandat 1511.801 kb on - strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.804 kb on - strandat 1511.804 kb on - strandat 1511.804 kb on - strandat 1511.917 kb on + strandat 1511.918 kb on - strandat 1511.918 kb on - strandat 1511.921 kb on + strandat 1511.922 kb on - strandat 1511.930 kb on + strandat 1511.930 kb on + strandat 1511.930 kb on + strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.964 kb on + strandat 1511.965 kb on - strandat 1511.965 kb on - strandat 1512.093 kb on + strand, within AO356_06850at 1512.093 kb on + strand, within AO356_06850at 1512.402 kb on + strand, within AO356_06850at 1512.402 kb on + strand, within AO356_06850at 1512.402 kb on + strand, within AO356_06850at 1512.505 kb on - strand, within AO356_06850at 1512.505 kb on - strand, within AO356_06850

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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1,510,095 + +1.1
1,510,096 - -0.4
1,510,124 + +1.4
1,510,125 - +0.6
1,510,126 + +0.3
1,510,127 - +0.3
1,510,127 - -0.2
1,510,153 + +2.1
1,510,153 + +1.1
1,510,153 + +1.1
1,510,154 - +1.6
1,510,155 + -0.7
1,510,155 + +0.8
1,510,155 + +1.6
1,510,156 - +0.6
1,510,156 - +0.2
1,510,203 - +2.6
1,510,314 + AO356_06840 0.17 +1.3
1,510,314 + AO356_06840 0.17 +0.6
1,510,314 + AO356_06840 0.17 +0.3
1,510,314 + AO356_06840 0.17 +1.6
1,510,314 + AO356_06840 0.17 -0.1
1,510,315 - AO356_06840 0.17 -1.4
1,510,315 - AO356_06840 0.17 -0.2
1,510,315 - AO356_06840 0.17 +0.1
1,510,315 - AO356_06840 0.17 +1.1
1,510,678 + AO356_06840 0.66 -0.7
1,510,678 + AO356_06840 0.66 +0.7
1,510,678 + AO356_06840 0.66 +1.5
1,510,679 - AO356_06840 0.66 -0.4
1,510,679 - AO356_06840 0.66 +3.0
1,510,679 - AO356_06840 0.66 +1.3
1,510,679 - AO356_06840 0.66 +0.6
1,510,681 + AO356_06840 0.67 +0.2
1,510,682 - AO356_06840 0.67 +2.1
1,510,692 + AO356_06840 0.68 +2.4
1,510,748 - AO356_06840 0.76 +0.6
1,510,774 + AO356_06840 0.79 +0.3
1,510,775 - AO356_06840 0.79 +1.0
1,510,858 + +0.1
1,510,858 + +0.1
1,510,858 + +0.3
1,510,858 + -1.4
1,510,859 - +0.6
1,510,859 - -1.4
1,510,919 - -1.2
1,510,919 - +2.0
1,510,927 + -1.4
1,511,065 + +2.1
1,511,065 + +0.9
1,511,065 + +1.1
1,511,065 + -0.4
1,511,066 - +1.0
1,511,066 - +2.1
1,511,066 - +0.6
1,511,066 - +1.6
1,511,066 - +1.9
1,511,123 + +0.9
1,511,123 + +0.1
1,511,167 + AO356_06845 0.16 +0.6
1,511,167 + AO356_06845 0.16 +1.6
1,511,168 - AO356_06845 0.16 -0.4
1,511,191 + AO356_06845 0.19 +0.7
1,511,192 - AO356_06845 0.19 +0.1
1,511,210 + AO356_06845 0.22 +0.9
1,511,221 + AO356_06845 0.23 -0.4
1,511,221 + AO356_06845 0.23 -1.2
1,511,221 + AO356_06845 0.23 +1.1
1,511,222 - AO356_06845 0.24 -0.4
1,511,222 - AO356_06845 0.24 +1.6
1,511,222 - AO356_06845 0.24 +1.0
1,511,236 + AO356_06845 0.25 +3.6
1,511,237 - AO356_06845 0.26 +1.1
1,511,237 - AO356_06845 0.26 +0.9
1,511,249 - AO356_06845 0.27 +2.4
1,511,254 + AO356_06845 0.28 +0.8
1,511,254 + AO356_06845 0.28 +0.7
1,511,254 + AO356_06845 0.28 +0.1
1,511,254 + AO356_06845 0.28 +0.1
1,511,254 + AO356_06845 0.28 +1.1
1,511,254 + AO356_06845 0.28 +0.5
1,511,255 - AO356_06845 0.28 +1.8
1,511,278 + AO356_06845 0.31 -0.7
1,511,287 + AO356_06845 0.33 +1.1
1,511,287 + AO356_06845 0.33 -1.4
1,511,288 - AO356_06845 0.33 +1.6
1,511,288 - AO356_06845 0.33 +1.3
1,511,288 - AO356_06845 0.33 +0.1
1,511,378 - AO356_06845 0.45 +1.3
1,511,443 + AO356_06845 0.54 +0.8
1,511,443 + AO356_06845 0.54 +1.9
1,511,443 + AO356_06845 0.54 +1.1
1,511,443 + AO356_06845 0.54 +0.6
1,511,444 - AO356_06845 0.54 +1.9
1,511,519 - AO356_06845 0.65 +0.7
1,511,593 + AO356_06845 0.75 -0.1
1,511,594 - AO356_06845 0.75 -2.0
1,511,594 - AO356_06845 0.75 +0.6
1,511,681 - AO356_06845 0.87 +1.6
1,511,691 + AO356_06845 0.88 -0.4
1,511,691 + AO356_06845 0.88 +0.6
1,511,692 - AO356_06845 0.89 +0.6
1,511,692 - AO356_06845 0.89 +0.9
1,511,692 - AO356_06845 0.89 -3.2
1,511,692 - AO356_06845 0.89 -0.4
1,511,699 + AO356_06845 0.89 +0.6
1,511,700 - AO356_06845 0.90 +3.1
1,511,700 - AO356_06845 0.90 +1.6
1,511,701 + AO356_06845 0.90 +1.6
1,511,702 - +1.6
1,511,702 - +2.9
1,511,782 + -0.4
1,511,791 + +1.0
1,511,791 + -1.4
1,511,792 - +2.7
1,511,792 - +0.1
1,511,792 - -0.4
1,511,800 + -0.4
1,511,801 - -1.2
1,511,803 + -0.4
1,511,803 + -0.4
1,511,803 + -0.2
1,511,803 + +1.1
1,511,803 + -0.9
1,511,803 + +1.7
1,511,803 + +1.0
1,511,804 - +0.7
1,511,804 - +1.7
1,511,804 - +0.1
1,511,917 + -0.4
1,511,918 - -0.4
1,511,918 - +0.5
1,511,921 + +2.0
1,511,922 - +1.1
1,511,930 + -0.8
1,511,930 + +0.6
1,511,930 + +2.1
1,511,931 - -0.9
1,511,931 - -0.0
1,511,931 - +1.1
1,511,931 - +0.3
1,511,931 - +1.6
1,511,964 + -0.4
1,511,965 - +0.9
1,511,965 - +1.0
1,512,093 + AO356_06850 0.24 +0.9
1,512,093 + AO356_06850 0.24 +3.1
1,512,402 + AO356_06850 0.65 +1.1
1,512,402 + AO356_06850 0.65 +0.6
1,512,402 + AO356_06850 0.65 +0.1
1,512,505 - AO356_06850 0.78 -1.0
1,512,505 - AO356_06850 0.78 +1.6

Or see this region's nucleotide sequence