Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04085

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04080 and AO356_04085 are separated by 132 nucleotidesAO356_04085 and AO356_04090 are separated by 2 nucleotides AO356_04080: AO356_04080 - hemolysin secretion protein D, at 917,827 to 919,191 _04080 AO356_04085: AO356_04085 - hypothetical protein, at 919,324 to 919,920 _04085 AO356_04090: AO356_04090 - LysR family transcriptional regulator, at 919,923 to 920,816 _04090 Position (kb) 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 918.326 kb on - strand, within AO356_04080at 918.326 kb on - strand, within AO356_04080at 918.946 kb on + strand, within AO356_04080at 918.946 kb on + strand, within AO356_04080at 918.946 kb on + strand, within AO356_04080at 918.947 kb on - strand, within AO356_04080at 919.018 kb on + strand, within AO356_04080at 919.019 kb on - strand, within AO356_04080at 919.019 kb on - strand, within AO356_04080at 919.019 kb on - strand, within AO356_04080at 919.138 kb on + strandat 919.139 kb on - strandat 919.189 kb on + strandat 919.189 kb on + strandat 919.271 kb on + strandat 919.272 kb on - strandat 919.272 kb on - strandat 919.341 kb on + strandat 919.341 kb on + strandat 919.342 kb on - strandat 919.342 kb on - strandat 919.600 kb on - strand, within AO356_04085at 919.600 kb on - strand, within AO356_04085at 919.600 kb on - strand, within AO356_04085at 919.600 kb on - strand, within AO356_04085at 919.600 kb on - strand, within AO356_04085at 919.788 kb on + strand, within AO356_04085at 920.083 kb on + strand, within AO356_04090at 920.098 kb on + strand, within AO356_04090at 920.108 kb on - strand, within AO356_04090at 920.108 kb on - strand, within AO356_04090at 920.108 kb on - strand, within AO356_04090at 920.290 kb on + strand, within AO356_04090at 920.290 kb on + strand, within AO356_04090at 920.290 kb on + strand, within AO356_04090at 920.290 kb on + strand, within AO356_04090at 920.291 kb on - strand, within AO356_04090at 920.291 kb on - strand, within AO356_04090at 920.291 kb on - strand, within AO356_04090at 920.311 kb on + strand, within AO356_04090at 920.311 kb on + strand, within AO356_04090at 920.323 kb on + strand, within AO356_04090at 920.323 kb on + strand, within AO356_04090at 920.324 kb on - strand, within AO356_04090at 920.324 kb on - strand, within AO356_04090at 920.405 kb on - strand, within AO356_04090at 920.455 kb on + strand, within AO356_04090at 920.529 kb on - strand, within AO356_04090at 920.561 kb on - strand, within AO356_04090at 920.561 kb on - strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.698 kb on + strand, within AO356_04090at 920.699 kb on - strand, within AO356_04090at 920.699 kb on - strand, within AO356_04090at 920.699 kb on - strand, within AO356_04090at 920.699 kb on - strand, within AO356_04090at 920.699 kb on - strand, within AO356_04090at 920.830 kb on + strandat 920.831 kb on - strandat 920.831 kb on - strandat 920.867 kb on + strandat 920.867 kb on + strandat 920.867 kb on + strandat 920.867 kb on + strandat 920.867 kb on + strandat 920.867 kb on + strandat 920.867 kb on + strandat 920.868 kb on - strandat 920.868 kb on - strandat 920.868 kb on - strandat 920.868 kb on - strandat 920.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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918,326 - AO356_04080 0.37 -0.6
918,326 - AO356_04080 0.37 -0.0
918,946 + AO356_04080 0.82 -0.6
918,946 + AO356_04080 0.82 +1.4
918,946 + AO356_04080 0.82 -2.0
918,947 - AO356_04080 0.82 -0.6
919,018 + AO356_04080 0.87 -0.6
919,019 - AO356_04080 0.87 +0.8
919,019 - AO356_04080 0.87 +0.4
919,019 - AO356_04080 0.87 -2.0
919,138 + -1.6
919,139 - +0.4
919,189 + +0.3
919,189 + -0.0
919,271 + +1.2
919,272 - -0.0
919,272 - +1.7
919,341 + +0.0
919,341 + -0.6
919,342 - +2.0
919,342 - -2.8
919,600 - AO356_04085 0.46 -2.2
919,600 - AO356_04085 0.46 -0.0
919,600 - AO356_04085 0.46 -1.1
919,600 - AO356_04085 0.46 +1.0
919,600 - AO356_04085 0.46 +0.0
919,788 + AO356_04085 0.78 -0.6
920,083 + AO356_04090 0.18 +1.4
920,098 + AO356_04090 0.20 -0.2
920,108 - AO356_04090 0.21 -1.6
920,108 - AO356_04090 0.21 -1.6
920,108 - AO356_04090 0.21 +1.0
920,290 + AO356_04090 0.41 +0.4
920,290 + AO356_04090 0.41 +1.0
920,290 + AO356_04090 0.41 +0.4
920,290 + AO356_04090 0.41 +0.4
920,291 - AO356_04090 0.41 -0.0
920,291 - AO356_04090 0.41 -0.0
920,291 - AO356_04090 0.41 +1.7
920,311 + AO356_04090 0.43 +1.0
920,311 + AO356_04090 0.43 +1.7
920,323 + AO356_04090 0.45 -0.4
920,323 + AO356_04090 0.45 +1.0
920,324 - AO356_04090 0.45 -0.4
920,324 - AO356_04090 0.45 +1.0
920,405 - AO356_04090 0.54 +0.5
920,455 + AO356_04090 0.60 -0.2
920,529 - AO356_04090 0.68 +2.4
920,561 - AO356_04090 0.71 -2.0
920,561 - AO356_04090 0.71 +0.4
920,698 + AO356_04090 0.87 +1.7
920,698 + AO356_04090 0.87 +0.7
920,698 + AO356_04090 0.87 +1.8
920,698 + AO356_04090 0.87 +1.0
920,698 + AO356_04090 0.87 +1.0
920,698 + AO356_04090 0.87 -1.0
920,698 + AO356_04090 0.87 +1.2
920,698 + AO356_04090 0.87 -0.0
920,698 + AO356_04090 0.87 +2.2
920,698 + AO356_04090 0.87 -1.6
920,699 - AO356_04090 0.87 +1.4
920,699 - AO356_04090 0.87 +1.4
920,699 - AO356_04090 0.87 +0.7
920,699 - AO356_04090 0.87 +0.8
920,699 - AO356_04090 0.87 +0.0
920,830 + +0.4
920,831 - -1.2
920,831 - +0.4
920,867 + -1.0
920,867 + +0.1
920,867 + -0.6
920,867 + +1.0
920,867 + +1.1
920,867 + +1.2
920,867 + +0.4
920,868 - -0.4
920,868 - -1.2
920,868 - +0.2
920,868 - +0.6
920,868 - -0.2

Or see this region's nucleotide sequence