Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04000

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03995 and AO356_04000 overlap by 44 nucleotidesAO356_04000 and AO356_04005 are separated by 172 nucleotidesAO356_04005 and AO356_04010 are separated by 12 nucleotides AO356_03995: AO356_03995 - potassium transporter TrkH, at 889,381 to 890,835 _03995 AO356_04000: AO356_04000 - AraC family transcriptional regulator, at 890,792 to 891,820 _04000 AO356_04005: AO356_04005 - hypothetical protein, at 891,993 to 892,304 _04005 AO356_04010: AO356_04010 - phosphohydrolase, at 892,317 to 892,904 _04010 Position (kb) 890 891 892Strain fitness (log2 ratio) -2 -1 0 1 2 3at 889.946 kb on - strand, within AO356_03995at 889.946 kb on - strand, within AO356_03995at 890.146 kb on + strand, within AO356_03995at 890.146 kb on + strand, within AO356_03995at 890.146 kb on + strand, within AO356_03995at 890.146 kb on + strand, within AO356_03995at 890.146 kb on + strand, within AO356_03995at 890.147 kb on - strand, within AO356_03995at 890.147 kb on - strand, within AO356_03995at 890.147 kb on - strand, within AO356_03995at 890.147 kb on - strand, within AO356_03995at 890.252 kb on - strand, within AO356_03995at 890.351 kb on - strand, within AO356_03995at 890.461 kb on + strand, within AO356_03995at 890.461 kb on + strand, within AO356_03995at 890.461 kb on + strand, within AO356_03995at 890.461 kb on + strand, within AO356_03995at 890.461 kb on + strand, within AO356_03995at 890.462 kb on - strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.524 kb on + strand, within AO356_03995at 890.811 kb on + strandat 890.944 kb on - strand, within AO356_04000at 890.944 kb on - strand, within AO356_04000at 890.983 kb on - strand, within AO356_04000at 890.983 kb on - strand, within AO356_04000at 890.983 kb on - strand, within AO356_04000at 890.983 kb on - strand, within AO356_04000at 891.137 kb on + strand, within AO356_04000at 891.137 kb on + strand, within AO356_04000at 891.137 kb on + strand, within AO356_04000at 891.137 kb on + strand, within AO356_04000at 891.137 kb on + strand, within AO356_04000at 891.138 kb on - strand, within AO356_04000at 891.138 kb on - strand, within AO356_04000at 891.138 kb on - strand, within AO356_04000at 891.138 kb on - strand, within AO356_04000at 891.138 kb on - strand, within AO356_04000at 891.138 kb on - strand, within AO356_04000at 891.186 kb on + strand, within AO356_04000at 891.186 kb on + strand, within AO356_04000at 891.187 kb on - strand, within AO356_04000at 891.282 kb on + strand, within AO356_04000at 891.282 kb on + strand, within AO356_04000at 891.283 kb on - strand, within AO356_04000at 891.861 kb on + strandat 891.905 kb on + strandat 891.906 kb on - strandat 891.906 kb on - strandat 891.906 kb on - strandat 891.908 kb on + strandat 891.908 kb on + strandat 891.908 kb on + strandat 891.908 kb on + strandat 891.908 kb on + strandat 891.908 kb on + strandat 891.909 kb on - strandat 891.909 kb on - strandat 891.951 kb on + strandat 891.952 kb on - strandat 891.952 kb on - strandat 891.974 kb on - strandat 892.004 kb on + strandat 892.004 kb on + strandat 892.016 kb on + strandat 892.038 kb on + strand, within AO356_04005at 892.038 kb on + strand, within AO356_04005at 892.038 kb on + strand, within AO356_04005at 892.041 kb on + strand, within AO356_04005at 892.042 kb on - strand, within AO356_04005at 892.042 kb on - strand, within AO356_04005at 892.242 kb on + strand, within AO356_04005at 892.242 kb on + strand, within AO356_04005at 892.242 kb on + strand, within AO356_04005at 892.269 kb on + strand, within AO356_04005at 892.269 kb on + strand, within AO356_04005at 892.270 kb on - strand, within AO356_04005at 892.302 kb on + strandat 892.303 kb on - strandat 892.303 kb on - strandat 892.536 kb on + strand, within AO356_04010at 892.536 kb on + strand, within AO356_04010at 892.536 kb on + strand, within AO356_04010at 892.536 kb on + strand, within AO356_04010at 892.536 kb on + strand, within AO356_04010at 892.537 kb on - strand, within AO356_04010at 892.537 kb on - strand, within AO356_04010at 892.537 kb on - strand, within AO356_04010at 892.537 kb on - strand, within AO356_04010at 892.584 kb on + strand, within AO356_04010at 892.584 kb on + strand, within AO356_04010at 892.584 kb on + strand, within AO356_04010at 892.584 kb on + strand, within AO356_04010at 892.584 kb on + strand, within AO356_04010at 892.584 kb on + strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.585 kb on - strand, within AO356_04010at 892.677 kb on + strand, within AO356_04010at 892.677 kb on + strand, within AO356_04010at 892.680 kb on + strand, within AO356_04010at 892.680 kb on + strand, within AO356_04010at 892.680 kb on + strand, within AO356_04010at 892.681 kb on - strand, within AO356_04010at 892.681 kb on - strand, within AO356_04010at 892.681 kb on - strand, within AO356_04010at 892.773 kb on + strand, within AO356_04010at 892.800 kb on + strand, within AO356_04010at 892.801 kb on - strand, within AO356_04010at 892.801 kb on - strand, within AO356_04010

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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889,946 - AO356_03995 0.39 +0.5
889,946 - AO356_03995 0.39 +0.4
890,146 + AO356_03995 0.53 +0.4
890,146 + AO356_03995 0.53 +0.4
890,146 + AO356_03995 0.53 -0.0
890,146 + AO356_03995 0.53 +2.5
890,146 + AO356_03995 0.53 -1.6
890,147 - AO356_03995 0.53 +1.4
890,147 - AO356_03995 0.53 +0.4
890,147 - AO356_03995 0.53 +1.7
890,147 - AO356_03995 0.53 -0.4
890,252 - AO356_03995 0.60 +2.2
890,351 - AO356_03995 0.67 +0.4
890,461 + AO356_03995 0.74 +0.4
890,461 + AO356_03995 0.74 +0.2
890,461 + AO356_03995 0.74 -1.2
890,461 + AO356_03995 0.74 +1.1
890,461 + AO356_03995 0.74 +0.4
890,462 - AO356_03995 0.74 -0.2
890,524 + AO356_03995 0.79 +0.2
890,524 + AO356_03995 0.79 +0.4
890,524 + AO356_03995 0.79 +1.7
890,524 + AO356_03995 0.79 +0.7
890,524 + AO356_03995 0.79 +0.4
890,524 + AO356_03995 0.79 -0.3
890,524 + AO356_03995 0.79 -0.6
890,524 + AO356_03995 0.79 +0.4
890,811 + +1.7
890,944 - AO356_04000 0.15 +0.0
890,944 - AO356_04000 0.15 +0.1
890,983 - AO356_04000 0.19 -0.4
890,983 - AO356_04000 0.19 -0.6
890,983 - AO356_04000 0.19 +1.4
890,983 - AO356_04000 0.19 +1.8
891,137 + AO356_04000 0.34 -0.3
891,137 + AO356_04000 0.34 +1.2
891,137 + AO356_04000 0.34 -0.6
891,137 + AO356_04000 0.34 +0.4
891,137 + AO356_04000 0.34 +1.4
891,138 - AO356_04000 0.34 -0.9
891,138 - AO356_04000 0.34 +1.1
891,138 - AO356_04000 0.34 +1.2
891,138 - AO356_04000 0.34 +3.1
891,138 - AO356_04000 0.34 +1.5
891,138 - AO356_04000 0.34 -0.0
891,186 + AO356_04000 0.38 +0.8
891,186 + AO356_04000 0.38 +1.2
891,187 - AO356_04000 0.38 +1.0
891,282 + AO356_04000 0.48 +0.4
891,282 + AO356_04000 0.48 +2.7
891,283 - AO356_04000 0.48 +1.1
891,861 + +0.4
891,905 + +0.9
891,906 - +0.7
891,906 - +0.7
891,906 - +0.4
891,908 + +0.1
891,908 + +1.7
891,908 + +0.1
891,908 + -0.2
891,908 + +1.5
891,908 + +0.9
891,909 - +1.2
891,909 - +0.6
891,951 + +0.4
891,952 - +1.7
891,952 - -1.6
891,974 - +0.8
892,004 + +0.4
892,004 + -0.6
892,016 + +0.2
892,038 + AO356_04005 0.14 +1.7
892,038 + AO356_04005 0.14 -0.6
892,038 + AO356_04005 0.14 +0.4
892,041 + AO356_04005 0.15 +1.5
892,042 - AO356_04005 0.16 +1.2
892,042 - AO356_04005 0.16 +0.9
892,242 + AO356_04005 0.80 +2.5
892,242 + AO356_04005 0.80 +2.2
892,242 + AO356_04005 0.80 +0.1
892,269 + AO356_04005 0.88 -0.6
892,269 + AO356_04005 0.88 -0.6
892,270 - AO356_04005 0.89 +2.2
892,302 + +0.1
892,303 - -0.1
892,303 - +0.4
892,536 + AO356_04010 0.37 +1.2
892,536 + AO356_04010 0.37 +1.7
892,536 + AO356_04010 0.37 -0.9
892,536 + AO356_04010 0.37 +1.4
892,536 + AO356_04010 0.37 +1.1
892,537 - AO356_04010 0.37 +1.7
892,537 - AO356_04010 0.37 +1.0
892,537 - AO356_04010 0.37 -0.2
892,537 - AO356_04010 0.37 +0.9
892,584 + AO356_04010 0.45 +0.9
892,584 + AO356_04010 0.45 -1.6
892,584 + AO356_04010 0.45 +0.4
892,584 + AO356_04010 0.45 -1.6
892,584 + AO356_04010 0.45 -0.6
892,584 + AO356_04010 0.45 -1.6
892,585 - AO356_04010 0.46 +1.2
892,585 - AO356_04010 0.46 +0.7
892,585 - AO356_04010 0.46 +0.9
892,585 - AO356_04010 0.46 +0.8
892,585 - AO356_04010 0.46 +0.7
892,585 - AO356_04010 0.46 +0.2
892,585 - AO356_04010 0.46 +0.4
892,585 - AO356_04010 0.46 -2.0
892,585 - AO356_04010 0.46 +1.7
892,585 - AO356_04010 0.46 -0.1
892,585 - AO356_04010 0.46 +0.4
892,677 + AO356_04010 0.61 -0.6
892,677 + AO356_04010 0.61 -1.6
892,680 + AO356_04010 0.62 -0.9
892,680 + AO356_04010 0.62 +1.7
892,680 + AO356_04010 0.62 +1.4
892,681 - AO356_04010 0.62 -1.2
892,681 - AO356_04010 0.62 +0.9
892,681 - AO356_04010 0.62 +0.7
892,773 + AO356_04010 0.78 +0.9
892,800 + AO356_04010 0.82 +0.2
892,801 - AO356_04010 0.82 -1.6
892,801 - AO356_04010 0.82 -0.3

Or see this region's nucleotide sequence