Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02735

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02730 and AO356_02735 are separated by 24 nucleotidesAO356_02735 and AO356_02740 overlap by 4 nucleotides AO356_02730: AO356_02730 - type III secretion system protein InvA, at 597,166 to 599,217 _02730 AO356_02735: AO356_02735 - type III secretion regulator InvE, at 599,242 to 600,348 _02735 AO356_02740: AO356_02740 - protein InvG, at 600,345 to 602,000 _02740 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 598.529 kb on + strand, within AO356_02730at 598.529 kb on + strand, within AO356_02730at 598.530 kb on - strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.562 kb on - strand, within AO356_02730at 598.608 kb on + strand, within AO356_02730at 598.608 kb on + strand, within AO356_02730at 598.608 kb on + strand, within AO356_02730at 598.609 kb on - strand, within AO356_02730at 598.670 kb on + strand, within AO356_02730at 598.671 kb on - strand, within AO356_02730at 598.671 kb on - strand, within AO356_02730at 598.671 kb on - strand, within AO356_02730at 599.726 kb on + strand, within AO356_02735at 599.727 kb on - strand, within AO356_02735at 599.747 kb on + strand, within AO356_02735at 599.790 kb on - strand, within AO356_02735at 600.368 kb on - strandat 600.508 kb on + strandat 600.509 kb on - strandat 600.784 kb on + strand, within AO356_02740at 600.832 kb on + strand, within AO356_02740at 600.832 kb on + strand, within AO356_02740at 600.833 kb on - strand, within AO356_02740at 600.833 kb on - strand, within AO356_02740at 600.918 kb on - strand, within AO356_02740

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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598,529 + AO356_02730 0.66 -1.2
598,529 + AO356_02730 0.66 -1.3
598,530 - AO356_02730 0.66 +0.2
598,561 + AO356_02730 0.68 -0.2
598,561 + AO356_02730 0.68 -0.8
598,561 + AO356_02730 0.68 -0.8
598,561 + AO356_02730 0.68 -0.2
598,561 + AO356_02730 0.68 -0.8
598,561 + AO356_02730 0.68 +0.2
598,561 + AO356_02730 0.68 -0.8
598,562 - AO356_02730 0.68 +0.2
598,608 + AO356_02730 0.70 -0.2
598,608 + AO356_02730 0.70 +1.8
598,608 + AO356_02730 0.70 -1.2
598,609 - AO356_02730 0.70 -0.8
598,670 + AO356_02730 0.73 -2.3
598,671 - AO356_02730 0.73 -0.8
598,671 - AO356_02730 0.73 -0.8
598,671 - AO356_02730 0.73 -1.3
599,726 + AO356_02735 0.44 -0.8
599,727 - AO356_02735 0.44 -0.3
599,747 + AO356_02735 0.46 -0.8
599,790 - AO356_02735 0.50 -0.8
600,368 - -1.8
600,508 + +0.1
600,509 - +0.2
600,784 + AO356_02740 0.27 +1.6
600,832 + AO356_02740 0.29 +1.3
600,832 + AO356_02740 0.29 +0.2
600,833 - AO356_02740 0.29 +0.8
600,833 - AO356_02740 0.29 +0.8
600,918 - AO356_02740 0.35 -1.8

Or see this region's nucleotide sequence