Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02445

Experiment: KB-half, Pseudo11 supernatant, 100 uM FeCl3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02440 and AO356_02445 are separated by 149 nucleotidesAO356_02445 and AO356_02450 overlap by 1 nucleotidesAO356_02450 and AO356_02455 are separated by 205 nucleotides AO356_02440: AO356_02440 - cytochrome C oxidase Cbb3, at 530,917 to 531,900 _02440 AO356_02445: AO356_02445 - prevent-host-death protein, at 532,050 to 532,304 _02445 AO356_02450: AO356_02450 - twitching motility protein PilT, at 532,304 to 532,726 _02450 AO356_02455: AO356_02455 - (Fe-S)-binding protein, at 532,932 to 534,347 _02455 Position (kb) 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 531.064 kb on + strand, within AO356_02440at 531.065 kb on - strand, within AO356_02440at 531.065 kb on - strand, within AO356_02440at 531.181 kb on + strand, within AO356_02440at 531.181 kb on + strand, within AO356_02440at 531.182 kb on - strand, within AO356_02440at 531.183 kb on + strand, within AO356_02440at 531.183 kb on + strand, within AO356_02440at 531.183 kb on + strand, within AO356_02440at 531.183 kb on + strand, within AO356_02440at 531.184 kb on - strand, within AO356_02440at 531.184 kb on - strand, within AO356_02440at 531.184 kb on - strand, within AO356_02440at 531.184 kb on - strand, within AO356_02440at 531.184 kb on - strand, within AO356_02440at 531.184 kb on - strand, within AO356_02440at 531.187 kb on + strand, within AO356_02440at 531.188 kb on - strand, within AO356_02440at 531.188 kb on - strand, within AO356_02440at 531.568 kb on + strand, within AO356_02440at 531.568 kb on + strand, within AO356_02440at 531.736 kb on + strand, within AO356_02440at 531.737 kb on - strand, within AO356_02440at 531.737 kb on - strand, within AO356_02440at 531.737 kb on - strand, within AO356_02440at 531.848 kb on - strandat 531.848 kb on - strandat 531.853 kb on + strandat 531.916 kb on + strandat 531.916 kb on + strandat 531.916 kb on + strandat 531.916 kb on + strandat 531.917 kb on - strandat 531.986 kb on + strandat 532.035 kb on - strandat 532.064 kb on + strandat 532.064 kb on + strandat 532.065 kb on - strandat 532.065 kb on - strandat 532.168 kb on + strand, within AO356_02445at 532.169 kb on - strand, within AO356_02445at 532.183 kb on - strand, within AO356_02445at 532.183 kb on - strand, within AO356_02445at 532.307 kb on + strandat 532.307 kb on + strandat 532.307 kb on + strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.308 kb on - strandat 532.357 kb on + strand, within AO356_02450at 532.365 kb on + strand, within AO356_02450at 532.365 kb on + strand, within AO356_02450at 532.365 kb on + strand, within AO356_02450at 532.366 kb on - strand, within AO356_02450at 532.403 kb on + strand, within AO356_02450at 532.403 kb on + strand, within AO356_02450at 532.403 kb on + strand, within AO356_02450at 532.404 kb on - strand, within AO356_02450at 532.404 kb on - strand, within AO356_02450at 532.423 kb on - strand, within AO356_02450at 532.740 kb on - strandat 532.773 kb on - strandat 532.846 kb on + strandat 532.847 kb on - strandat 532.891 kb on + strandat 532.891 kb on + strandat 532.891 kb on + strandat 532.952 kb on - strandat 533.001 kb on + strandat 533.001 kb on + strandat 533.002 kb on - strandat 533.022 kb on + strandat 533.086 kb on + strand, within AO356_02455at 533.086 kb on + strand, within AO356_02455at 533.086 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.091 kb on + strand, within AO356_02455at 533.256 kb on + strand, within AO356_02455at 533.257 kb on - strand, within AO356_02455at 533.280 kb on + strand, within AO356_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo11 supernatant, 100 uM FeCl3
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531,064 + AO356_02440 0.15 -1.3
531,065 - AO356_02440 0.15 -1.3
531,065 - AO356_02440 0.15 +1.5
531,181 + AO356_02440 0.27 +0.7
531,181 + AO356_02440 0.27 -0.8
531,182 - AO356_02440 0.27 +0.2
531,183 + AO356_02440 0.27 +1.7
531,183 + AO356_02440 0.27 -0.8
531,183 + AO356_02440 0.27 +0.2
531,183 + AO356_02440 0.27 -1.8
531,184 - AO356_02440 0.27 -1.8
531,184 - AO356_02440 0.27 -2.4
531,184 - AO356_02440 0.27 +0.2
531,184 - AO356_02440 0.27 -0.8
531,184 - AO356_02440 0.27 +0.2
531,184 - AO356_02440 0.27 +0.2
531,187 + AO356_02440 0.27 -0.3
531,188 - AO356_02440 0.28 -0.3
531,188 - AO356_02440 0.28 -0.8
531,568 + AO356_02440 0.66 -0.3
531,568 + AO356_02440 0.66 +2.0
531,736 + AO356_02440 0.83 -1.3
531,737 - AO356_02440 0.83 -0.8
531,737 - AO356_02440 0.83 +0.2
531,737 - AO356_02440 0.83 +1.5
531,848 - -1.8
531,848 - -0.8
531,853 + -0.8
531,916 + -1.8
531,916 + -0.8
531,916 + -0.1
531,916 + -0.4
531,917 - +0.8
531,986 + -0.8
532,035 - +0.2
532,064 + -0.8
532,064 + -1.4
532,065 - +0.4
532,065 - +0.4
532,168 + AO356_02445 0.46 -0.8
532,169 - AO356_02445 0.47 -0.8
532,183 - AO356_02445 0.52 +0.8
532,183 - AO356_02445 0.52 -1.8
532,307 + +0.5
532,307 + -0.2
532,307 + +0.5
532,308 - +0.6
532,308 - +2.2
532,308 - +0.2
532,308 - -0.8
532,308 - -0.8
532,308 - -0.1
532,357 + AO356_02450 0.13 -0.8
532,365 + AO356_02450 0.14 +0.2
532,365 + AO356_02450 0.14 -0.8
532,365 + AO356_02450 0.14 +0.0
532,366 - AO356_02450 0.15 +0.2
532,403 + AO356_02450 0.23 -0.1
532,403 + AO356_02450 0.23 +0.2
532,403 + AO356_02450 0.23 +0.1
532,404 - AO356_02450 0.24 -0.8
532,404 - AO356_02450 0.24 +0.5
532,423 - AO356_02450 0.28 +0.5
532,740 - +0.5
532,773 - +1.2
532,846 + +2.2
532,847 - -1.4
532,891 + -1.3
532,891 + -2.2
532,891 + +0.5
532,952 - +0.2
533,001 + -2.4
533,001 + +0.7
533,002 - -1.8
533,022 + +0.2
533,086 + AO356_02455 0.11 -1.3
533,086 + AO356_02455 0.11 -0.8
533,086 + AO356_02455 0.11 -0.8
533,091 + AO356_02455 0.11 -0.8
533,091 + AO356_02455 0.11 +1.7
533,091 + AO356_02455 0.11 -2.6
533,091 + AO356_02455 0.11 -0.8
533,091 + AO356_02455 0.11 +0.2
533,256 + AO356_02455 0.23 -0.0
533,257 - AO356_02455 0.23 -2.8
533,280 + AO356_02455 0.25 -0.8

Or see this region's nucleotide sequence