Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22390

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22385 and ABZR87_RS22390 are separated by 56 nucleotidesABZR87_RS22390 and ABZR87_RS22395 are separated by 197 nucleotides ABZR87_RS22385: ABZR87_RS22385 - cation-translocating P-type ATPase, at 1,381,156 to 1,383,537 _RS22385 ABZR87_RS22390: ABZR87_RS22390 - alpha/beta fold hydrolase, at 1,383,594 to 1,384,142 _RS22390 ABZR87_RS22395: ABZR87_RS22395 - citrate:proton symporter, at 1,384,340 to 1,385,638 _RS22395 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -2 -1 0 1 2at 1382.954 kb on - strand, within ABZR87_RS22385at 1383.671 kb on + strand, within ABZR87_RS22390at 1383.671 kb on + strand, within ABZR87_RS22390at 1383.671 kb on + strand, within ABZR87_RS22390at 1383.671 kb on + strand, within ABZR87_RS22390at 1383.671 kb on + strand, within ABZR87_RS22390at 1383.672 kb on - strand, within ABZR87_RS22390at 1383.672 kb on - strand, within ABZR87_RS22390at 1383.672 kb on - strand, within ABZR87_RS22390at 1384.170 kb on - strandat 1384.249 kb on + strandat 1384.249 kb on + strandat 1384.280 kb on + strandat 1384.280 kb on + strandat 1384.281 kb on - strandat 1384.545 kb on - strand, within ABZR87_RS22395at 1384.545 kb on - strand, within ABZR87_RS22395at 1384.545 kb on - strand, within ABZR87_RS22395at 1384.545 kb on - strand, within ABZR87_RS22395at 1384.545 kb on - strand, within ABZR87_RS22395at 1384.545 kb on - strand, within ABZR87_RS22395at 1384.545 kb on - strand, within ABZR87_RS22395at 1384.657 kb on - strand, within ABZR87_RS22395at 1384.725 kb on - strand, within ABZR87_RS22395at 1384.725 kb on - strand, within ABZR87_RS22395at 1384.725 kb on - strand, within ABZR87_RS22395at 1385.141 kb on + strand, within ABZR87_RS22395at 1385.141 kb on + strand, within ABZR87_RS22395at 1385.142 kb on - strand, within ABZR87_RS22395at 1385.142 kb on - strand, within ABZR87_RS22395

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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1,382,954 - ABZR87_RS22385 0.75 -1.6
1,383,671 + ABZR87_RS22390 0.14 -1.6
1,383,671 + ABZR87_RS22390 0.14 -0.9
1,383,671 + ABZR87_RS22390 0.14 -1.1
1,383,671 + ABZR87_RS22390 0.14 -1.3
1,383,671 + ABZR87_RS22390 0.14 -0.0
1,383,672 - ABZR87_RS22390 0.14 -1.2
1,383,672 - ABZR87_RS22390 0.14 -0.1
1,383,672 - ABZR87_RS22390 0.14 -0.5
1,384,170 - -2.3
1,384,249 + +0.2
1,384,249 + +0.7
1,384,280 + +0.8
1,384,280 + +1.1
1,384,281 - -0.9
1,384,545 - ABZR87_RS22395 0.16 -0.3
1,384,545 - ABZR87_RS22395 0.16 -0.5
1,384,545 - ABZR87_RS22395 0.16 +0.8
1,384,545 - ABZR87_RS22395 0.16 -2.1
1,384,545 - ABZR87_RS22395 0.16 -0.5
1,384,545 - ABZR87_RS22395 0.16 +0.8
1,384,545 - ABZR87_RS22395 0.16 +2.2
1,384,657 - ABZR87_RS22395 0.24 -1.1
1,384,725 - ABZR87_RS22395 0.30 +0.6
1,384,725 - ABZR87_RS22395 0.30 -0.9
1,384,725 - ABZR87_RS22395 0.30 -0.1
1,385,141 + ABZR87_RS22395 0.62 -1.4
1,385,141 + ABZR87_RS22395 0.62 -0.1
1,385,142 - ABZR87_RS22395 0.62 -0.6
1,385,142 - ABZR87_RS22395 0.62 -0.6

Or see this region's nucleotide sequence