Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22385 and ABZR87_RS22390 are separated by 56 nucleotides ABZR87_RS22390 and ABZR87_RS22395 are separated by 197 nucleotides
ABZR87_RS22385: ABZR87_RS22385 - cation-translocating P-type ATPase, at 1,381,156 to 1,383,537
_RS22385
ABZR87_RS22390: ABZR87_RS22390 - alpha/beta fold hydrolase, at 1,383,594 to 1,384,142
_RS22390
ABZR87_RS22395: ABZR87_RS22395 - citrate:proton symporter, at 1,384,340 to 1,385,638
_RS22395
Position (kb)
1383
1384
1385 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1382.954 kb on - strand, within ABZR87_RS22385 at 1383.671 kb on + strand, within ABZR87_RS22390 at 1383.671 kb on + strand, within ABZR87_RS22390 at 1383.671 kb on + strand, within ABZR87_RS22390 at 1383.671 kb on + strand, within ABZR87_RS22390 at 1383.671 kb on + strand, within ABZR87_RS22390 at 1383.672 kb on - strand, within ABZR87_RS22390 at 1383.672 kb on - strand, within ABZR87_RS22390 at 1383.672 kb on - strand, within ABZR87_RS22390 at 1384.170 kb on - strand at 1384.249 kb on + strand at 1384.249 kb on + strand at 1384.280 kb on + strand at 1384.280 kb on + strand at 1384.281 kb on - strand at 1384.545 kb on - strand, within ABZR87_RS22395 at 1384.545 kb on - strand, within ABZR87_RS22395 at 1384.545 kb on - strand, within ABZR87_RS22395 at 1384.545 kb on - strand, within ABZR87_RS22395 at 1384.545 kb on - strand, within ABZR87_RS22395 at 1384.545 kb on - strand, within ABZR87_RS22395 at 1384.545 kb on - strand, within ABZR87_RS22395 at 1384.657 kb on - strand, within ABZR87_RS22395 at 1384.725 kb on - strand, within ABZR87_RS22395 at 1384.725 kb on - strand, within ABZR87_RS22395 at 1384.725 kb on - strand, within ABZR87_RS22395 at 1385.141 kb on + strand, within ABZR87_RS22395 at 1385.141 kb on + strand, within ABZR87_RS22395 at 1385.142 kb on - strand, within ABZR87_RS22395 at 1385.142 kb on - strand, within ABZR87_RS22395
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 1,382,954 - ABZR87_RS22385 0.75 -1.6 1,383,671 + ABZR87_RS22390 0.14 -1.6 1,383,671 + ABZR87_RS22390 0.14 -0.9 1,383,671 + ABZR87_RS22390 0.14 -1.1 1,383,671 + ABZR87_RS22390 0.14 -1.3 1,383,671 + ABZR87_RS22390 0.14 -0.0 1,383,672 - ABZR87_RS22390 0.14 -1.2 1,383,672 - ABZR87_RS22390 0.14 -0.1 1,383,672 - ABZR87_RS22390 0.14 -0.5 1,384,170 - -2.3 1,384,249 + +0.2 1,384,249 + +0.7 1,384,280 + +0.8 1,384,280 + +1.1 1,384,281 - -0.9 1,384,545 - ABZR87_RS22395 0.16 -0.3 1,384,545 - ABZR87_RS22395 0.16 -0.5 1,384,545 - ABZR87_RS22395 0.16 +0.8 1,384,545 - ABZR87_RS22395 0.16 -2.1 1,384,545 - ABZR87_RS22395 0.16 -0.5 1,384,545 - ABZR87_RS22395 0.16 +0.8 1,384,545 - ABZR87_RS22395 0.16 +2.2 1,384,657 - ABZR87_RS22395 0.24 -1.1 1,384,725 - ABZR87_RS22395 0.30 +0.6 1,384,725 - ABZR87_RS22395 0.30 -0.9 1,384,725 - ABZR87_RS22395 0.30 -0.1 1,385,141 + ABZR87_RS22395 0.62 -1.4 1,385,141 + ABZR87_RS22395 0.62 -0.1 1,385,142 - ABZR87_RS22395 0.62 -0.6 1,385,142 - ABZR87_RS22395 0.62 -0.6
Or see this region's nucleotide sequence