Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21930 and ABZR87_RS21935 are separated by 420 nucleotides ABZR87_RS21935 and ABZR87_RS21940 are separated by 44 nucleotides ABZR87_RS21940 and ABZR87_RS21945 overlap by 1 nucleotides ABZR87_RS21945 and ABZR87_RS21950 overlap by 8 nucleotides
ABZR87_RS21930: ABZR87_RS21930 - hypothetical protein, at 1,296,577 to 1,297,002
_RS21930
ABZR87_RS21935: ABZR87_RS21935 - DUF6726 family protein, at 1,297,423 to 1,297,590
_RS21935
ABZR87_RS21940: ABZR87_RS21940 - hypothetical protein, at 1,297,635 to 1,298,147
_RS21940
ABZR87_RS21945: ABZR87_RS21945 - glycoside hydrolase family 19 protein, at 1,298,147 to 1,298,710
_RS21945
ABZR87_RS21950: ABZR87_RS21950 - hypothetical protein, at 1,298,703 to 1,299,113
_RS21950
Position (kb)
1297
1298
1299 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1296.639 kb on - strand, within ABZR87_RS21930 at 1296.639 kb on - strand, within ABZR87_RS21930 at 1296.639 kb on - strand, within ABZR87_RS21930 at 1296.639 kb on - strand, within ABZR87_RS21930 at 1296.639 kb on - strand, within ABZR87_RS21930 at 1296.681 kb on - strand, within ABZR87_RS21930 at 1296.718 kb on - strand, within ABZR87_RS21930 at 1296.719 kb on + strand, within ABZR87_RS21930 at 1296.719 kb on + strand, within ABZR87_RS21930 at 1296.719 kb on + strand, within ABZR87_RS21930 at 1296.719 kb on + strand, within ABZR87_RS21930 at 1296.720 kb on - strand, within ABZR87_RS21930 at 1296.720 kb on - strand, within ABZR87_RS21930 at 1296.720 kb on - strand, within ABZR87_RS21930 at 1296.720 kb on - strand, within ABZR87_RS21930 at 1296.720 kb on - strand, within ABZR87_RS21930 at 1296.720 kb on - strand, within ABZR87_RS21930 at 1296.723 kb on + strand, within ABZR87_RS21930 at 1296.723 kb on + strand, within ABZR87_RS21930 at 1296.724 kb on - strand, within ABZR87_RS21930 at 1296.724 kb on - strand, within ABZR87_RS21930 at 1296.724 kb on - strand, within ABZR87_RS21930 at 1296.762 kb on - strand, within ABZR87_RS21930 at 1296.800 kb on + strand, within ABZR87_RS21930 at 1296.800 kb on + strand, within ABZR87_RS21930 at 1296.800 kb on + strand, within ABZR87_RS21930 at 1296.800 kb on + strand, within ABZR87_RS21930 at 1296.800 kb on + strand, within ABZR87_RS21930 at 1296.801 kb on - strand, within ABZR87_RS21930 at 1296.801 kb on - strand, within ABZR87_RS21930 at 1296.839 kb on + strand, within ABZR87_RS21930 at 1296.839 kb on + strand, within ABZR87_RS21930 at 1296.840 kb on - strand, within ABZR87_RS21930 at 1296.840 kb on - strand, within ABZR87_RS21930 at 1296.878 kb on + strand, within ABZR87_RS21930 at 1296.878 kb on + strand, within ABZR87_RS21930 at 1296.920 kb on + strand, within ABZR87_RS21930 at 1296.920 kb on + strand, within ABZR87_RS21930 at 1296.921 kb on - strand, within ABZR87_RS21930 at 1297.629 kb on + strand at 1297.629 kb on + strand at 1297.629 kb on + strand at 1297.629 kb on + strand at 1297.630 kb on - strand at 1297.630 kb on - strand at 1297.630 kb on - strand at 1297.630 kb on - strand at 1297.636 kb on + strand at 1297.879 kb on - strand, within ABZR87_RS21940 at 1298.397 kb on + strand, within ABZR87_RS21945 at 1298.439 kb on + strand, within ABZR87_RS21945 at 1298.440 kb on - strand, within ABZR87_RS21945 at 1298.490 kb on + strand, within ABZR87_RS21945 at 1298.491 kb on - strand, within ABZR87_RS21945 at 1298.532 kb on + strand, within ABZR87_RS21945 at 1298.532 kb on + strand, within ABZR87_RS21945 at 1298.532 kb on + strand, within ABZR87_RS21945 at 1298.532 kb on + strand, within ABZR87_RS21945 at 1298.533 kb on - strand, within ABZR87_RS21945 at 1298.720 kb on + strand at 1298.720 kb on + strand at 1298.721 kb on - strand at 1298.836 kb on + strand, within ABZR87_RS21950 at 1298.836 kb on + strand, within ABZR87_RS21950 at 1298.837 kb on - strand, within ABZR87_RS21950 at 1298.837 kb on - strand, within ABZR87_RS21950 at 1298.837 kb on - strand, within ABZR87_RS21950 at 1298.896 kb on + strand, within ABZR87_RS21950 at 1298.896 kb on + strand, within ABZR87_RS21950 at 1299.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 1,296,639 - ABZR87_RS21930 0.15 -0.6 1,296,639 - ABZR87_RS21930 0.15 -1.4 1,296,639 - ABZR87_RS21930 0.15 -0.2 1,296,639 - ABZR87_RS21930 0.15 -1.3 1,296,639 - ABZR87_RS21930 0.15 -0.1 1,296,681 - ABZR87_RS21930 0.24 +1.1 1,296,718 - ABZR87_RS21930 0.33 -0.5 1,296,719 + ABZR87_RS21930 0.33 -0.9 1,296,719 + ABZR87_RS21930 0.33 -1.5 1,296,719 + ABZR87_RS21930 0.33 -0.5 1,296,719 + ABZR87_RS21930 0.33 -2.2 1,296,720 - ABZR87_RS21930 0.34 -0.2 1,296,720 - ABZR87_RS21930 0.34 -0.4 1,296,720 - ABZR87_RS21930 0.34 -0.6 1,296,720 - ABZR87_RS21930 0.34 -0.9 1,296,720 - ABZR87_RS21930 0.34 +0.0 1,296,720 - ABZR87_RS21930 0.34 -1.1 1,296,723 + ABZR87_RS21930 0.34 -0.3 1,296,723 + ABZR87_RS21930 0.34 +0.4 1,296,724 - ABZR87_RS21930 0.35 +0.1 1,296,724 - ABZR87_RS21930 0.35 +0.6 1,296,724 - ABZR87_RS21930 0.35 -0.7 1,296,762 - ABZR87_RS21930 0.43 +0.9 1,296,800 + ABZR87_RS21930 0.52 -0.3 1,296,800 + ABZR87_RS21930 0.52 -1.7 1,296,800 + ABZR87_RS21930 0.52 -1.1 1,296,800 + ABZR87_RS21930 0.52 +0.9 1,296,800 + ABZR87_RS21930 0.52 +2.4 1,296,801 - ABZR87_RS21930 0.53 -3.4 1,296,801 - ABZR87_RS21930 0.53 +0.8 1,296,839 + ABZR87_RS21930 0.62 -1.1 1,296,839 + ABZR87_RS21930 0.62 +1.2 1,296,840 - ABZR87_RS21930 0.62 -0.1 1,296,840 - ABZR87_RS21930 0.62 +0.3 1,296,878 + ABZR87_RS21930 0.71 -1.0 1,296,878 + ABZR87_RS21930 0.71 -0.1 1,296,920 + ABZR87_RS21930 0.81 -1.3 1,296,920 + ABZR87_RS21930 0.81 +0.3 1,296,921 - ABZR87_RS21930 0.81 -2.8 1,297,629 + -0.2 1,297,629 + -0.4 1,297,629 + -1.2 1,297,629 + +1.4 1,297,630 - -0.6 1,297,630 - -0.0 1,297,630 - -0.2 1,297,630 - -0.1 1,297,636 + +0.5 1,297,879 - ABZR87_RS21940 0.48 -0.8 1,298,397 + ABZR87_RS21945 0.44 -1.3 1,298,439 + ABZR87_RS21945 0.52 -0.1 1,298,440 - ABZR87_RS21945 0.52 -0.0 1,298,490 + ABZR87_RS21945 0.61 -0.2 1,298,491 - ABZR87_RS21945 0.61 -2.1 1,298,532 + ABZR87_RS21945 0.68 -0.0 1,298,532 + ABZR87_RS21945 0.68 +1.2 1,298,532 + ABZR87_RS21945 0.68 +1.0 1,298,532 + ABZR87_RS21945 0.68 -0.5 1,298,533 - ABZR87_RS21945 0.68 +1.8 1,298,720 + -2.1 1,298,720 + -1.3 1,298,721 - -2.6 1,298,836 + ABZR87_RS21950 0.32 -3.0 1,298,836 + ABZR87_RS21950 0.32 -2.1 1,298,837 - ABZR87_RS21950 0.33 -2.5 1,298,837 - ABZR87_RS21950 0.33 -2.4 1,298,837 - ABZR87_RS21950 0.33 -2.0 1,298,896 + ABZR87_RS21950 0.47 -2.4 1,298,896 + ABZR87_RS21950 0.47 -3.2 1,299,099 - -1.2
Or see this region's nucleotide sequence