Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21465

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21455 and ABZR87_RS21460 are separated by 81 nucleotidesABZR87_RS21460 and ABZR87_RS21465 are separated by 294 nucleotidesABZR87_RS21465 and ABZR87_RS21470 are separated by 107 nucleotidesABZR87_RS21470 and ABZR87_RS21475 overlap by 4 nucleotides ABZR87_RS21455: ABZR87_RS21455 - sensor domain-containing diguanylate cyclase, at 1,193,925 to 1,195,397 _RS21455 ABZR87_RS21460: ABZR87_RS21460 - hypothetical protein, at 1,195,479 to 1,195,667 _RS21460 ABZR87_RS21465: ABZR87_RS21465 - M1 family metallopeptidase, at 1,195,962 to 1,198,202 _RS21465 ABZR87_RS21470: ABZR87_RS21470 - P-II family nitrogen regulator, at 1,198,310 to 1,198,633 _RS21470 ABZR87_RS21475: ABZR87_RS21475 - efflux RND transporter permease subunit, at 1,198,630 to 1,201,779 _RS21475 Position (kb) 1195 1196 1197 1198 1199Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1195.015 kb on + strand, within ABZR87_RS21455at 1195.150 kb on + strand, within ABZR87_RS21455at 1195.150 kb on + strand, within ABZR87_RS21455at 1195.151 kb on - strand, within ABZR87_RS21455at 1195.151 kb on - strand, within ABZR87_RS21455at 1195.151 kb on - strand, within ABZR87_RS21455at 1195.151 kb on - strand, within ABZR87_RS21455at 1195.191 kb on - strand, within ABZR87_RS21455at 1195.191 kb on - strand, within ABZR87_RS21455at 1195.297 kb on + strandat 1195.297 kb on + strandat 1195.457 kb on - strandat 1195.493 kb on + strandat 1195.494 kb on - strandat 1195.535 kb on + strand, within ABZR87_RS21460at 1195.536 kb on - strand, within ABZR87_RS21460at 1195.536 kb on - strand, within ABZR87_RS21460at 1195.605 kb on - strand, within ABZR87_RS21460at 1195.643 kb on + strand, within ABZR87_RS21460at 1195.644 kb on - strand, within ABZR87_RS21460at 1195.741 kb on - strandat 1196.016 kb on + strandat 1196.016 kb on + strandat 1196.017 kb on - strandat 1196.168 kb on + strandat 1196.169 kb on - strandat 1196.169 kb on - strandat 1196.241 kb on + strand, within ABZR87_RS21465at 1196.259 kb on + strand, within ABZR87_RS21465at 1196.259 kb on + strand, within ABZR87_RS21465at 1196.259 kb on + strand, within ABZR87_RS21465at 1196.259 kb on + strand, within ABZR87_RS21465at 1196.260 kb on - strand, within ABZR87_RS21465at 1196.260 kb on - strand, within ABZR87_RS21465at 1196.466 kb on + strand, within ABZR87_RS21465at 1196.466 kb on + strand, within ABZR87_RS21465at 1196.466 kb on + strand, within ABZR87_RS21465at 1196.467 kb on - strand, within ABZR87_RS21465at 1196.467 kb on - strand, within ABZR87_RS21465at 1196.467 kb on - strand, within ABZR87_RS21465at 1196.467 kb on - strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.508 kb on + strand, within ABZR87_RS21465at 1196.509 kb on - strand, within ABZR87_RS21465at 1196.509 kb on - strand, within ABZR87_RS21465at 1196.509 kb on - strand, within ABZR87_RS21465at 1196.509 kb on - strand, within ABZR87_RS21465at 1196.509 kb on - strand, within ABZR87_RS21465at 1196.609 kb on + strand, within ABZR87_RS21465at 1196.681 kb on + strand, within ABZR87_RS21465at 1196.770 kb on - strand, within ABZR87_RS21465at 1196.811 kb on + strand, within ABZR87_RS21465at 1196.971 kb on - strand, within ABZR87_RS21465at 1196.971 kb on - strand, within ABZR87_RS21465at 1196.971 kb on - strand, within ABZR87_RS21465at 1196.973 kb on + strand, within ABZR87_RS21465at 1196.974 kb on - strand, within ABZR87_RS21465at 1196.974 kb on - strand, within ABZR87_RS21465at 1196.974 kb on - strand, within ABZR87_RS21465at 1196.974 kb on - strand, within ABZR87_RS21465at 1196.979 kb on + strand, within ABZR87_RS21465at 1196.979 kb on + strand, within ABZR87_RS21465at 1196.979 kb on + strand, within ABZR87_RS21465at 1196.979 kb on + strand, within ABZR87_RS21465at 1196.979 kb on + strand, within ABZR87_RS21465at 1196.980 kb on - strand, within ABZR87_RS21465at 1196.980 kb on - strand, within ABZR87_RS21465at 1197.152 kb on + strand, within ABZR87_RS21465at 1197.328 kb on - strand, within ABZR87_RS21465at 1197.328 kb on - strand, within ABZR87_RS21465at 1197.438 kb on + strand, within ABZR87_RS21465at 1197.439 kb on - strand, within ABZR87_RS21465at 1197.439 kb on - strand, within ABZR87_RS21465at 1197.477 kb on + strand, within ABZR87_RS21465at 1197.478 kb on - strand, within ABZR87_RS21465at 1197.478 kb on - strand, within ABZR87_RS21465at 1197.478 kb on - strand, within ABZR87_RS21465at 1197.516 kb on + strand, within ABZR87_RS21465at 1197.528 kb on + strand, within ABZR87_RS21465at 1197.529 kb on - strand, within ABZR87_RS21465at 1197.727 kb on - strand, within ABZR87_RS21465at 1197.765 kb on + strand, within ABZR87_RS21465at 1197.873 kb on + strand, within ABZR87_RS21465at 1197.874 kb on - strand, within ABZR87_RS21465at 1197.874 kb on - strand, within ABZR87_RS21465at 1197.876 kb on + strand, within ABZR87_RS21465at 1197.876 kb on + strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.888 kb on + strand, within ABZR87_RS21465at 1197.889 kb on - strand, within ABZR87_RS21465at 1197.889 kb on - strand, within ABZR87_RS21465at 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.987 kb on - strandat 1198.201 kb on - strandat 1198.525 kb on - strand, within ABZR87_RS21470at 1198.525 kb on - strand, within ABZR87_RS21470at 1198.614 kb on - strandat 1198.661 kb on + strandat 1198.661 kb on + strandat 1198.661 kb on + strandat 1198.933 kb on + strandat 1198.933 kb on + strandat 1198.934 kb on - strandat 1198.934 kb on - strandat 1198.971 kb on - strand, within ABZR87_RS21475at 1198.971 kb on - strand, within ABZR87_RS21475at 1199.168 kb on + strand, within ABZR87_RS21475at 1199.168 kb on + strand, within ABZR87_RS21475at 1199.169 kb on - strand, within ABZR87_RS21475at 1199.171 kb on + strand, within ABZR87_RS21475at 1199.172 kb on - strand, within ABZR87_RS21475

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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1,195,015 + ABZR87_RS21455 0.74 -0.7
1,195,150 + ABZR87_RS21455 0.83 +1.2
1,195,150 + ABZR87_RS21455 0.83 -0.2
1,195,151 - ABZR87_RS21455 0.83 +0.0
1,195,151 - ABZR87_RS21455 0.83 -0.9
1,195,151 - ABZR87_RS21455 0.83 +0.5
1,195,151 - ABZR87_RS21455 0.83 -0.1
1,195,191 - ABZR87_RS21455 0.86 +0.4
1,195,191 - ABZR87_RS21455 0.86 +0.1
1,195,297 + +1.7
1,195,297 + +0.7
1,195,457 - -0.2
1,195,493 + -2.4
1,195,494 - -1.0
1,195,535 + ABZR87_RS21460 0.30 +0.2
1,195,536 - ABZR87_RS21460 0.30 -0.2
1,195,536 - ABZR87_RS21460 0.30 -0.6
1,195,605 - ABZR87_RS21460 0.67 -0.9
1,195,643 + ABZR87_RS21460 0.87 -0.2
1,195,644 - ABZR87_RS21460 0.87 -0.1
1,195,741 - -0.3
1,196,016 + +0.5
1,196,016 + +1.0
1,196,017 - -0.1
1,196,168 + -0.9
1,196,169 - +0.9
1,196,169 - +0.8
1,196,241 + ABZR87_RS21465 0.12 +0.4
1,196,259 + ABZR87_RS21465 0.13 +2.2
1,196,259 + ABZR87_RS21465 0.13 +0.9
1,196,259 + ABZR87_RS21465 0.13 -0.8
1,196,259 + ABZR87_RS21465 0.13 -0.3
1,196,260 - ABZR87_RS21465 0.13 +0.4
1,196,260 - ABZR87_RS21465 0.13 -1.6
1,196,466 + ABZR87_RS21465 0.22 -1.1
1,196,466 + ABZR87_RS21465 0.22 +0.3
1,196,466 + ABZR87_RS21465 0.22 -0.3
1,196,467 - ABZR87_RS21465 0.23 +0.7
1,196,467 - ABZR87_RS21465 0.23 -1.2
1,196,467 - ABZR87_RS21465 0.23 -0.9
1,196,467 - ABZR87_RS21465 0.23 -1.3
1,196,508 + ABZR87_RS21465 0.24 -0.0
1,196,508 + ABZR87_RS21465 0.24 -2.6
1,196,508 + ABZR87_RS21465 0.24 -0.3
1,196,508 + ABZR87_RS21465 0.24 -0.6
1,196,508 + ABZR87_RS21465 0.24 -0.2
1,196,508 + ABZR87_RS21465 0.24 +1.0
1,196,508 + ABZR87_RS21465 0.24 +0.0
1,196,508 + ABZR87_RS21465 0.24 +0.8
1,196,508 + ABZR87_RS21465 0.24 -0.0
1,196,509 - ABZR87_RS21465 0.24 +0.0
1,196,509 - ABZR87_RS21465 0.24 +0.0
1,196,509 - ABZR87_RS21465 0.24 +0.2
1,196,509 - ABZR87_RS21465 0.24 -0.2
1,196,509 - ABZR87_RS21465 0.24 -0.1
1,196,609 + ABZR87_RS21465 0.29 +0.7
1,196,681 + ABZR87_RS21465 0.32 +0.4
1,196,770 - ABZR87_RS21465 0.36 -0.5
1,196,811 + ABZR87_RS21465 0.38 -0.3
1,196,971 - ABZR87_RS21465 0.45 +0.7
1,196,971 - ABZR87_RS21465 0.45 +0.7
1,196,971 - ABZR87_RS21465 0.45 +0.8
1,196,973 + ABZR87_RS21465 0.45 -0.7
1,196,974 - ABZR87_RS21465 0.45 -0.2
1,196,974 - ABZR87_RS21465 0.45 -0.3
1,196,974 - ABZR87_RS21465 0.45 -1.6
1,196,974 - ABZR87_RS21465 0.45 -1.1
1,196,979 + ABZR87_RS21465 0.45 +1.2
1,196,979 + ABZR87_RS21465 0.45 -0.3
1,196,979 + ABZR87_RS21465 0.45 -0.4
1,196,979 + ABZR87_RS21465 0.45 +2.4
1,196,979 + ABZR87_RS21465 0.45 -0.2
1,196,980 - ABZR87_RS21465 0.45 -0.3
1,196,980 - ABZR87_RS21465 0.45 +0.4
1,197,152 + ABZR87_RS21465 0.53 -0.2
1,197,328 - ABZR87_RS21465 0.61 -1.1
1,197,328 - ABZR87_RS21465 0.61 +0.7
1,197,438 + ABZR87_RS21465 0.66 -0.3
1,197,439 - ABZR87_RS21465 0.66 -0.8
1,197,439 - ABZR87_RS21465 0.66 -1.0
1,197,477 + ABZR87_RS21465 0.68 +0.3
1,197,478 - ABZR87_RS21465 0.68 -0.2
1,197,478 - ABZR87_RS21465 0.68 +0.0
1,197,478 - ABZR87_RS21465 0.68 -0.8
1,197,516 + ABZR87_RS21465 0.69 -0.1
1,197,528 + ABZR87_RS21465 0.70 -0.0
1,197,529 - ABZR87_RS21465 0.70 +0.2
1,197,727 - ABZR87_RS21465 0.79 +0.4
1,197,765 + ABZR87_RS21465 0.80 -0.5
1,197,873 + ABZR87_RS21465 0.85 +0.1
1,197,874 - ABZR87_RS21465 0.85 -1.6
1,197,874 - ABZR87_RS21465 0.85 -2.3
1,197,876 + ABZR87_RS21465 0.85 +1.3
1,197,876 + ABZR87_RS21465 0.85 +1.4
1,197,877 - ABZR87_RS21465 0.85 +0.5
1,197,877 - ABZR87_RS21465 0.85 -0.1
1,197,877 - ABZR87_RS21465 0.85 -1.6
1,197,888 + ABZR87_RS21465 0.86 +0.2
1,197,889 - ABZR87_RS21465 0.86 -0.1
1,197,889 - ABZR87_RS21465 0.86 -1.2
1,197,984 + +4.6
1,197,984 + -0.7
1,197,984 + +1.2
1,197,984 + +1.5
1,197,985 - +0.9
1,197,985 - -1.6
1,197,985 - -1.3
1,197,985 - -0.6
1,197,987 - -0.6
1,198,201 - -1.4
1,198,525 - ABZR87_RS21470 0.66 -0.8
1,198,525 - ABZR87_RS21470 0.66 -0.5
1,198,614 - -0.1
1,198,661 + -0.9
1,198,661 + +0.1
1,198,661 + -1.8
1,198,933 + +1.6
1,198,933 + -0.3
1,198,934 - +0.6
1,198,934 - -0.8
1,198,971 - ABZR87_RS21475 0.11 +0.5
1,198,971 - ABZR87_RS21475 0.11 -1.1
1,199,168 + ABZR87_RS21475 0.17 -0.4
1,199,168 + ABZR87_RS21475 0.17 -0.2
1,199,169 - ABZR87_RS21475 0.17 -0.0
1,199,171 + ABZR87_RS21475 0.17 +0.5
1,199,172 - ABZR87_RS21475 0.17 +0.4

Or see this region's nucleotide sequence