Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21130

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21120 and ABZR87_RS21125 are separated by 187 nucleotidesABZR87_RS21125 and ABZR87_RS21130 are separated by 10 nucleotidesABZR87_RS21130 and ABZR87_RS21135 are separated by 347 nucleotidesABZR87_RS21135 and ABZR87_RS21140 are separated by 49 nucleotides ABZR87_RS21120: ABZR87_RS21120 - helix-turn-helix domain-containing protein, at 1,123,733 to 1,124,119 _RS21120 ABZR87_RS21125: ABZR87_RS21125 - YciI family protein, at 1,124,307 to 1,124,738 _RS21125 ABZR87_RS21130: ABZR87_RS21130 - RNA polymerase sigma factor, at 1,124,749 to 1,126,032 _RS21130 ABZR87_RS21135: ABZR87_RS21135 - FMN reductase, at 1,126,380 to 1,126,961 _RS21135 ABZR87_RS21140: ABZR87_RS21140 - dimethylsulfone monooxygenase SfnG, at 1,127,011 to 1,128,174 _RS21140 Position (kb) 1124 1125 1126 1127Strain fitness (log2 ratio) -2 -1 0 1 2at 1123.949 kb on + strand, within ABZR87_RS21120at 1123.950 kb on - strand, within ABZR87_RS21120at 1123.976 kb on + strand, within ABZR87_RS21120at 1123.976 kb on + strand, within ABZR87_RS21120at 1123.976 kb on + strand, within ABZR87_RS21120at 1123.977 kb on - strand, within ABZR87_RS21120at 1123.977 kb on - strand, within ABZR87_RS21120at 1123.977 kb on - strand, within ABZR87_RS21120at 1124.153 kb on - strandat 1124.185 kb on + strandat 1124.185 kb on + strandat 1124.186 kb on - strandat 1124.186 kb on - strandat 1124.195 kb on + strandat 1124.195 kb on + strandat 1124.196 kb on - strandat 1124.211 kb on + strandat 1124.211 kb on + strandat 1124.212 kb on - strandat 1124.212 kb on - strandat 1124.251 kb on + strandat 1124.252 kb on - strandat 1124.394 kb on + strand, within ABZR87_RS21125at 1124.394 kb on + strand, within ABZR87_RS21125at 1124.394 kb on + strand, within ABZR87_RS21125at 1124.394 kb on + strand, within ABZR87_RS21125at 1124.394 kb on + strand, within ABZR87_RS21125at 1124.394 kb on + strand, within ABZR87_RS21125at 1124.541 kb on + strand, within ABZR87_RS21125at 1124.737 kb on - strandat 1125.352 kb on + strand, within ABZR87_RS21130at 1125.352 kb on + strand, within ABZR87_RS21130at 1125.352 kb on + strand, within ABZR87_RS21130at 1125.352 kb on + strand, within ABZR87_RS21130at 1125.352 kb on + strand, within ABZR87_RS21130at 1125.352 kb on + strand, within ABZR87_RS21130at 1125.352 kb on + strand, within ABZR87_RS21130at 1125.352 kb on + strand, within ABZR87_RS21130at 1125.374 kb on - strand, within ABZR87_RS21130at 1125.586 kb on + strand, within ABZR87_RS21130at 1125.587 kb on - strand, within ABZR87_RS21130at 1125.656 kb on - strand, within ABZR87_RS21130at 1125.656 kb on - strand, within ABZR87_RS21130at 1125.739 kb on + strand, within ABZR87_RS21130at 1125.739 kb on + strand, within ABZR87_RS21130at 1125.740 kb on - strand, within ABZR87_RS21130at 1125.740 kb on - strand, within ABZR87_RS21130at 1125.812 kb on - strand, within ABZR87_RS21130at 1125.843 kb on + strand, within ABZR87_RS21130at 1125.843 kb on + strand, within ABZR87_RS21130at 1125.844 kb on - strand, within ABZR87_RS21130at 1125.946 kb on + strandat 1125.946 kb on + strandat 1126.200 kb on + strandat 1126.201 kb on - strandat 1126.216 kb on - strandat 1126.216 kb on - strandat 1126.239 kb on + strandat 1126.240 kb on - strandat 1126.241 kb on + strandat 1126.242 kb on - strandat 1126.257 kb on + strandat 1126.257 kb on + strandat 1126.258 kb on - strandat 1126.261 kb on + strandat 1126.262 kb on - strandat 1126.262 kb on - strandat 1126.262 kb on - strandat 1126.444 kb on + strand, within ABZR87_RS21135at 1126.445 kb on - strand, within ABZR87_RS21135at 1126.545 kb on + strand, within ABZR87_RS21135at 1126.641 kb on + strand, within ABZR87_RS21135at 1126.642 kb on - strand, within ABZR87_RS21135at 1126.812 kb on + strand, within ABZR87_RS21135at 1126.813 kb on - strand, within ABZR87_RS21135at 1126.813 kb on - strand, within ABZR87_RS21135

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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1,123,949 + ABZR87_RS21120 0.56 +0.5
1,123,950 - ABZR87_RS21120 0.56 +0.5
1,123,976 + ABZR87_RS21120 0.63 -0.4
1,123,976 + ABZR87_RS21120 0.63 -0.6
1,123,976 + ABZR87_RS21120 0.63 -0.7
1,123,977 - ABZR87_RS21120 0.63 -0.7
1,123,977 - ABZR87_RS21120 0.63 -0.3
1,123,977 - ABZR87_RS21120 0.63 -0.2
1,124,153 - +0.1
1,124,185 + -0.6
1,124,185 + -1.0
1,124,186 - -1.1
1,124,186 - +0.4
1,124,195 + +1.2
1,124,195 + +0.4
1,124,196 - +0.2
1,124,211 + -0.2
1,124,211 + +0.3
1,124,212 - +0.5
1,124,212 - +1.1
1,124,251 + -2.0
1,124,252 - -0.4
1,124,394 + ABZR87_RS21125 0.20 -0.1
1,124,394 + ABZR87_RS21125 0.20 -0.7
1,124,394 + ABZR87_RS21125 0.20 +0.5
1,124,394 + ABZR87_RS21125 0.20 +1.1
1,124,394 + ABZR87_RS21125 0.20 -0.4
1,124,394 + ABZR87_RS21125 0.20 +0.4
1,124,541 + ABZR87_RS21125 0.54 +0.6
1,124,737 - -1.1
1,125,352 + ABZR87_RS21130 0.47 +1.2
1,125,352 + ABZR87_RS21130 0.47 +0.7
1,125,352 + ABZR87_RS21130 0.47 -0.8
1,125,352 + ABZR87_RS21130 0.47 -0.4
1,125,352 + ABZR87_RS21130 0.47 +2.0
1,125,352 + ABZR87_RS21130 0.47 -1.6
1,125,352 + ABZR87_RS21130 0.47 +0.5
1,125,352 + ABZR87_RS21130 0.47 -0.7
1,125,374 - ABZR87_RS21130 0.49 -0.4
1,125,586 + ABZR87_RS21130 0.65 +0.6
1,125,587 - ABZR87_RS21130 0.65 +0.1
1,125,656 - ABZR87_RS21130 0.71 -1.7
1,125,656 - ABZR87_RS21130 0.71 -0.3
1,125,739 + ABZR87_RS21130 0.77 +0.4
1,125,739 + ABZR87_RS21130 0.77 -0.8
1,125,740 - ABZR87_RS21130 0.77 -0.3
1,125,740 - ABZR87_RS21130 0.77 -0.5
1,125,812 - ABZR87_RS21130 0.83 -0.5
1,125,843 + ABZR87_RS21130 0.85 -0.4
1,125,843 + ABZR87_RS21130 0.85 -0.1
1,125,844 - ABZR87_RS21130 0.85 -0.5
1,125,946 + +0.5
1,125,946 + -0.2
1,126,200 + -0.6
1,126,201 - -0.4
1,126,216 - -0.6
1,126,216 - -0.2
1,126,239 + -0.3
1,126,240 - +1.9
1,126,241 + -1.4
1,126,242 - +1.0
1,126,257 + -0.6
1,126,257 + +1.7
1,126,258 - -0.6
1,126,261 + -0.7
1,126,262 - -0.3
1,126,262 - +0.2
1,126,262 - +0.1
1,126,444 + ABZR87_RS21135 0.11 +0.0
1,126,445 - ABZR87_RS21135 0.11 -1.5
1,126,545 + ABZR87_RS21135 0.28 -0.3
1,126,641 + ABZR87_RS21135 0.45 -0.3
1,126,642 - ABZR87_RS21135 0.45 +0.1
1,126,812 + ABZR87_RS21135 0.74 +0.1
1,126,813 - ABZR87_RS21135 0.74 -0.1
1,126,813 - ABZR87_RS21135 0.74 +0.6

Or see this region's nucleotide sequence