Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20780 and ABZR87_RS20785 are separated by 18 nucleotides ABZR87_RS20785 and ABZR87_RS20790 are separated by 262 nucleotides ABZR87_RS20790 and ABZR87_RS20795 overlap by 1 nucleotides ABZR87_RS20795 and ABZR87_RS20800 overlap by 4 nucleotides
ABZR87_RS20780: ABZR87_RS20780 - FAD-dependent oxidoreductase, at 1,049,030 to 1,050,709
_RS20780
ABZR87_RS20785: ABZR87_RS20785 - DUF2783 domain-containing protein, at 1,050,728 to 1,050,934
_RS20785
ABZR87_RS20790: ABZR87_RS20790 - RNA ligase RtcB family protein, at 1,051,197 to 1,052,324
_RS20790
ABZR87_RS20795: ABZR87_RS20795 - peptide chain release factor H, at 1,052,324 to 1,052,941
_RS20795
ABZR87_RS20800: ABZR87_RS20800 - aldo/keto reductase, at 1,052,938 to 1,053,990
_RS20800
Position (kb) 1051
1052
1053 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1050.510 kb on + strand, within ABZR87_RS20780 at 1050.511 kb on - strand, within ABZR87_RS20780 at 1050.511 kb on - strand, within ABZR87_RS20780 at 1050.552 kb on - strand at 1050.552 kb on - strand at 1050.575 kb on + strand at 1050.576 kb on - strand at 1050.576 kb on - strand at 1050.773 kb on + strand, within ABZR87_RS20785 at 1050.965 kb on - strand at 1050.977 kb on - strand at 1051.004 kb on - strand at 1051.004 kb on - strand at 1051.004 kb on - strand at 1051.004 kb on - strand at 1051.040 kb on - strand at 1051.118 kb on + strand at 1051.119 kb on - strand at 1051.119 kb on - strand at 1051.185 kb on + strand at 1051.185 kb on + strand at 1051.185 kb on + strand at 1051.395 kb on + strand, within ABZR87_RS20790 at 1051.395 kb on + strand, within ABZR87_RS20790 at 1051.638 kb on + strand, within ABZR87_RS20790 at 1051.639 kb on - strand, within ABZR87_RS20790 at 1051.639 kb on - strand, within ABZR87_RS20790 at 1051.789 kb on - strand, within ABZR87_RS20790 at 1052.013 kb on + strand, within ABZR87_RS20790 at 1052.019 kb on + strand, within ABZR87_RS20790 at 1052.020 kb on - strand, within ABZR87_RS20790 at 1052.194 kb on - strand, within ABZR87_RS20790 at 1052.214 kb on + strand at 1052.299 kb on - strand at 1052.299 kb on - strand at 1052.299 kb on - strand at 1052.299 kb on - strand at 1052.331 kb on + strand at 1052.728 kb on + strand, within ABZR87_RS20795 at 1052.729 kb on - strand, within ABZR87_RS20795 at 1052.729 kb on - strand, within ABZR87_RS20795 at 1052.729 kb on - strand, within ABZR87_RS20795 at 1052.812 kb on + strand, within ABZR87_RS20795 at 1052.812 kb on + strand, within ABZR87_RS20795 at 1052.813 kb on - strand, within ABZR87_RS20795 at 1052.940 kb on - strand at 1053.233 kb on + strand, within ABZR87_RS20800 at 1053.233 kb on + strand, within ABZR87_RS20800 at 1053.233 kb on + strand, within ABZR87_RS20800 at 1053.234 kb on - strand, within ABZR87_RS20800 at 1053.234 kb on - strand, within ABZR87_RS20800 at 1053.234 kb on - strand, within ABZR87_RS20800 at 1053.312 kb on - strand, within ABZR87_RS20800
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 1,050,510 + ABZR87_RS20780 0.88 -0.9 1,050,511 - ABZR87_RS20780 0.88 +2.0 1,050,511 - ABZR87_RS20780 0.88 -0.2 1,050,552 - +0.6 1,050,552 - +1.0 1,050,575 + -0.6 1,050,576 - -2.3 1,050,576 - +0.5 1,050,773 + ABZR87_RS20785 0.22 -1.5 1,050,965 - +0.6 1,050,977 - -0.1 1,051,004 - -0.3 1,051,004 - -0.0 1,051,004 - +0.6 1,051,004 - +1.9 1,051,040 - +0.3 1,051,118 + -1.3 1,051,119 - -1.6 1,051,119 - -0.5 1,051,185 + -1.7 1,051,185 + -0.4 1,051,185 + -1.6 1,051,395 + ABZR87_RS20790 0.18 -0.2 1,051,395 + ABZR87_RS20790 0.18 +0.7 1,051,638 + ABZR87_RS20790 0.39 +0.4 1,051,639 - ABZR87_RS20790 0.39 -0.6 1,051,639 - ABZR87_RS20790 0.39 -0.3 1,051,789 - ABZR87_RS20790 0.52 +0.1 1,052,013 + ABZR87_RS20790 0.72 +0.5 1,052,019 + ABZR87_RS20790 0.73 +1.0 1,052,020 - ABZR87_RS20790 0.73 -0.3 1,052,194 - ABZR87_RS20790 0.88 -0.1 1,052,214 + +0.4 1,052,299 - +1.5 1,052,299 - -0.2 1,052,299 - -0.5 1,052,299 - +0.4 1,052,331 + +0.2 1,052,728 + ABZR87_RS20795 0.65 +1.7 1,052,729 - ABZR87_RS20795 0.66 -1.7 1,052,729 - ABZR87_RS20795 0.66 -0.3 1,052,729 - ABZR87_RS20795 0.66 -0.1 1,052,812 + ABZR87_RS20795 0.79 +2.7 1,052,812 + ABZR87_RS20795 0.79 -0.6 1,052,813 - ABZR87_RS20795 0.79 -0.4 1,052,940 - +0.1 1,053,233 + ABZR87_RS20800 0.28 -1.6 1,053,233 + ABZR87_RS20800 0.28 -0.9 1,053,233 + ABZR87_RS20800 0.28 -1.7 1,053,234 - ABZR87_RS20800 0.28 -0.2 1,053,234 - ABZR87_RS20800 0.28 -1.2 1,053,234 - ABZR87_RS20800 0.28 +1.1 1,053,312 - ABZR87_RS20800 0.36 +1.4
Or see this region's nucleotide sequence