Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20490 and ABZR87_RS20495 are separated by 169 nucleotides ABZR87_RS20495 and ABZR87_RS20500 are separated by 278 nucleotides ABZR87_RS20500 and ABZR87_RS20505 are separated by 79 nucleotides ABZR87_RS20505 and ABZR87_RS20510 overlap by 8 nucleotides
ABZR87_RS20490: ABZR87_RS20490 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 985,742 to 988,327
_RS20490
ABZR87_RS20495: ABZR87_RS20495 - hypothetical protein, at 988,497 to 989,012
_RS20495
ABZR87_RS20500: ABZR87_RS20500 - hypothetical protein, at 989,291 to 989,533
_RS20500
ABZR87_RS20505: ABZR87_RS20505 - hypothetical protein, at 989,613 to 989,813
_RS20505
ABZR87_RS20510: ABZR87_RS20510 - LysR family transcriptional regulator, at 989,806 to 989,880
_RS20510
Position (kb) 988
989
990 Strain fitness (log2 ratio) -2
-1
0
1
2 at 987.625 kb on - strand, within ABZR87_RS20490 at 988.038 kb on + strand, within ABZR87_RS20490 at 988.039 kb on - strand, within ABZR87_RS20490 at 988.314 kb on + strand at 988.315 kb on - strand at 988.350 kb on + strand at 988.409 kb on + strand at 988.491 kb on + strand at 988.491 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.522 kb on - strand at 988.522 kb on - strand at 988.522 kb on - strand at 988.716 kb on - strand, within ABZR87_RS20495 at 989.051 kb on + strand at 989.051 kb on + strand at 989.051 kb on + strand at 989.052 kb on - strand at 989.052 kb on - strand at 989.101 kb on + strand at 989.101 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.165 kb on + strand at 989.165 kb on + strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.203 kb on + strand at 989.204 kb on - strand at 989.210 kb on + strand at 989.210 kb on + strand at 989.211 kb on - strand at 989.250 kb on - strand at 989.287 kb on - strand at 989.378 kb on + strand, within ABZR87_RS20500 at 989.531 kb on + strand at 989.531 kb on + strand at 989.532 kb on - strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.545 kb on + strand at 989.545 kb on + strand at 989.545 kb on + strand at 989.546 kb on - strand at 989.546 kb on - strand at 989.546 kb on - strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.609 kb on + strand at 989.609 kb on + strand at 989.610 kb on - strand at 989.610 kb on - strand at 989.746 kb on + strand, within ABZR87_RS20505 at 989.747 kb on - strand, within ABZR87_RS20505 at 989.747 kb on - strand, within ABZR87_RS20505 at 989.873 kb on - strand at 989.901 kb on + strand at 989.902 kb on - strand at 989.902 kb on - strand at 989.902 kb on - strand at 989.915 kb on - strand at 989.921 kb on + strand at 989.922 kb on - strand at 989.922 kb on - strand at 989.922 kb on - strand at 989.927 kb on + strand at 989.927 kb on + strand at 989.927 kb on + strand at 989.928 kb on - strand at 989.928 kb on - strand at 989.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 987,625 - ABZR87_RS20490 0.73 -0.5 988,038 + ABZR87_RS20490 0.89 -0.9 988,039 - ABZR87_RS20490 0.89 +0.8 988,314 + +0.4 988,315 - -1.1 988,350 + -1.7 988,409 + -0.7 988,491 + -1.3 988,491 + +0.6 988,521 + +0.1 988,521 + -0.4 988,521 + -1.6 988,521 + +0.8 988,522 - +0.0 988,522 - +0.3 988,522 - -0.8 988,716 - ABZR87_RS20495 0.42 -1.5 989,051 + -1.5 989,051 + -1.8 989,051 + -1.4 989,052 - +0.9 989,052 - +1.4 989,101 + -0.3 989,101 + +1.3 989,134 + +0.1 989,134 + -0.9 989,134 + +1.0 989,165 + -1.6 989,165 + +0.3 989,166 - +0.5 989,166 - -0.3 989,166 - +0.1 989,203 + -0.1 989,204 - +0.1 989,210 + -0.7 989,210 + +0.8 989,211 - -0.5 989,250 - +1.1 989,287 - -0.4 989,378 + ABZR87_RS20500 0.36 -0.3 989,531 + +0.8 989,531 + +0.4 989,532 - -1.9 989,541 + -0.0 989,541 + +1.0 989,541 + +0.1 989,541 + +0.8 989,545 + +0.2 989,545 + +0.8 989,545 + -1.9 989,546 - -0.9 989,546 - +2.2 989,546 - -0.6 989,552 + -0.0 989,552 + +0.9 989,552 + -0.3 989,552 + +0.1 989,552 + -0.3 989,609 + -1.2 989,609 + -2.5 989,610 - -0.4 989,610 - +1.5 989,746 + ABZR87_RS20505 0.66 +0.1 989,747 - ABZR87_RS20505 0.67 +0.2 989,747 - ABZR87_RS20505 0.67 -0.1 989,873 - -2.3 989,901 + +0.1 989,902 - -0.4 989,902 - -0.7 989,902 - +2.5 989,915 - +1.3 989,921 + -0.1 989,922 - -0.8 989,922 - -1.1 989,922 - -0.0 989,927 + +0.1 989,927 + -0.2 989,927 + -0.9 989,928 - +0.8 989,928 - -1.4 989,930 - +0.5
Or see this region's nucleotide sequence