Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20335 and ABZR87_RS20340 are separated by 27 nucleotides ABZR87_RS20340 and ABZR87_RS20345 are separated by 183 nucleotides
ABZR87_RS20335: ABZR87_RS20335 - aldehyde dehydrogenase (NADP(+)), at 951,114 to 952,685
_RS20335
ABZR87_RS20340: ABZR87_RS20340 - 5-dehydro-4-deoxyglucarate dehydratase, at 952,713 to 953,651
_RS20340
ABZR87_RS20345: ABZR87_RS20345 - SMP-30/gluconolactonase/LRE family protein, at 953,835 to 954,896
_RS20345
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 951.783 kb on - strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.901 kb on + strand, within ABZR87_RS20335 at 951.902 kb on - strand, within ABZR87_RS20335 at 951.902 kb on - strand, within ABZR87_RS20335 at 952.644 kb on + strand at 952.645 kb on - strand at 952.685 kb on + strand at 952.864 kb on + strand, within ABZR87_RS20340 at 952.894 kb on + strand, within ABZR87_RS20340 at 952.924 kb on + strand, within ABZR87_RS20340 at 952.960 kb on + strand, within ABZR87_RS20340 at 952.968 kb on + strand, within ABZR87_RS20340 at 952.969 kb on - strand, within ABZR87_RS20340 at 953.009 kb on - strand, within ABZR87_RS20340 at 953.009 kb on - strand, within ABZR87_RS20340 at 953.033 kb on - strand, within ABZR87_RS20340 at 953.033 kb on - strand, within ABZR87_RS20340 at 953.074 kb on + strand, within ABZR87_RS20340 at 953.074 kb on + strand, within ABZR87_RS20340 at 953.074 kb on + strand, within ABZR87_RS20340 at 953.101 kb on + strand, within ABZR87_RS20340 at 953.101 kb on + strand, within ABZR87_RS20340 at 953.102 kb on - strand, within ABZR87_RS20340 at 953.102 kb on - strand, within ABZR87_RS20340 at 953.218 kb on + strand, within ABZR87_RS20340 at 953.218 kb on + strand, within ABZR87_RS20340 at 953.218 kb on + strand, within ABZR87_RS20340 at 953.299 kb on + strand, within ABZR87_RS20340 at 953.300 kb on - strand, within ABZR87_RS20340 at 953.354 kb on - strand, within ABZR87_RS20340 at 953.542 kb on + strand, within ABZR87_RS20340 at 953.543 kb on - strand, within ABZR87_RS20340 at 953.633 kb on + strand at 953.634 kb on - strand at 953.725 kb on + strand at 953.836 kb on + strand at 953.836 kb on + strand at 953.836 kb on + strand at 953.837 kb on - strand at 953.860 kb on + strand at 953.860 kb on + strand at 953.870 kb on - strand at 953.891 kb on + strand at 953.891 kb on + strand at 953.892 kb on - strand at 953.892 kb on - strand at 953.893 kb on + strand at 953.893 kb on + strand at 953.893 kb on - strand at 953.894 kb on - strand at 953.894 kb on - strand at 953.894 kb on - strand at 953.894 kb on - strand at 953.894 kb on - strand at 953.894 kb on - strand at 953.894 kb on - strand at 953.894 kb on - strand at 954.001 kb on + strand, within ABZR87_RS20345 at 954.154 kb on + strand, within ABZR87_RS20345 at 954.154 kb on + strand, within ABZR87_RS20345 at 954.154 kb on + strand, within ABZR87_RS20345 at 954.154 kb on + strand, within ABZR87_RS20345 at 954.155 kb on - strand, within ABZR87_RS20345 at 954.155 kb on - strand, within ABZR87_RS20345 at 954.155 kb on - strand, within ABZR87_RS20345 at 954.199 kb on + strand, within ABZR87_RS20345 at 954.199 kb on + strand, within ABZR87_RS20345 at 954.199 kb on + strand, within ABZR87_RS20345 at 954.199 kb on + strand, within ABZR87_RS20345 at 954.200 kb on - strand, within ABZR87_RS20345 at 954.200 kb on - strand, within ABZR87_RS20345 at 954.200 kb on - strand, within ABZR87_RS20345 at 954.434 kb on - strand, within ABZR87_RS20345 at 954.434 kb on - strand, within ABZR87_RS20345 at 954.537 kb on - strand, within ABZR87_RS20345 at 954.537 kb on - strand, within ABZR87_RS20345 at 954.550 kb on + strand, within ABZR87_RS20345 at 954.598 kb on + strand, within ABZR87_RS20345 at 954.640 kb on + strand, within ABZR87_RS20345 at 954.640 kb on + strand, within ABZR87_RS20345 at 954.640 kb on + strand, within ABZR87_RS20345 at 954.640 kb on + strand, within ABZR87_RS20345
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 951,783 - ABZR87_RS20335 0.43 +0.5 951,820 + ABZR87_RS20335 0.45 -0.5 951,820 + ABZR87_RS20335 0.45 +1.1 951,820 + ABZR87_RS20335 0.45 -0.1 951,821 - ABZR87_RS20335 0.45 -0.9 951,821 - ABZR87_RS20335 0.45 -0.2 951,821 - ABZR87_RS20335 0.45 -1.0 951,901 + ABZR87_RS20335 0.50 +1.7 951,902 - ABZR87_RS20335 0.50 -0.4 951,902 - ABZR87_RS20335 0.50 -1.1 952,644 + +0.5 952,645 - +0.7 952,685 + -0.2 952,864 + ABZR87_RS20340 0.16 +1.0 952,894 + ABZR87_RS20340 0.19 +2.3 952,924 + ABZR87_RS20340 0.22 -0.6 952,960 + ABZR87_RS20340 0.26 -1.3 952,968 + ABZR87_RS20340 0.27 +0.1 952,969 - ABZR87_RS20340 0.27 +0.9 953,009 - ABZR87_RS20340 0.32 -1.0 953,009 - ABZR87_RS20340 0.32 -1.0 953,033 - ABZR87_RS20340 0.34 -0.2 953,033 - ABZR87_RS20340 0.34 -1.0 953,074 + ABZR87_RS20340 0.38 -0.7 953,074 + ABZR87_RS20340 0.38 +0.8 953,074 + ABZR87_RS20340 0.38 -1.8 953,101 + ABZR87_RS20340 0.41 -0.4 953,101 + ABZR87_RS20340 0.41 +0.6 953,102 - ABZR87_RS20340 0.41 +0.0 953,102 - ABZR87_RS20340 0.41 -1.4 953,218 + ABZR87_RS20340 0.54 -0.1 953,218 + ABZR87_RS20340 0.54 +1.3 953,218 + ABZR87_RS20340 0.54 +1.1 953,299 + ABZR87_RS20340 0.62 +1.6 953,300 - ABZR87_RS20340 0.63 -0.1 953,354 - ABZR87_RS20340 0.68 -0.4 953,542 + ABZR87_RS20340 0.88 -2.1 953,543 - ABZR87_RS20340 0.88 -0.3 953,633 + +0.6 953,634 - +2.2 953,725 + +0.3 953,836 + -0.4 953,836 + +1.8 953,836 + -0.2 953,837 - -0.9 953,860 + -2.0 953,860 + -0.3 953,870 - -0.4 953,891 + -0.5 953,891 + -0.6 953,892 - -1.0 953,892 - +0.8 953,893 + -1.7 953,893 + +1.2 953,893 - +0.1 953,894 - -0.6 953,894 - +0.3 953,894 - -0.7 953,894 - +1.7 953,894 - +0.6 953,894 - -0.9 953,894 - -0.8 953,894 - -0.8 954,001 + ABZR87_RS20345 0.16 +0.1 954,154 + ABZR87_RS20345 0.30 -1.9 954,154 + ABZR87_RS20345 0.30 +0.9 954,154 + ABZR87_RS20345 0.30 +0.8 954,154 + ABZR87_RS20345 0.30 +1.3 954,155 - ABZR87_RS20345 0.30 +0.4 954,155 - ABZR87_RS20345 0.30 -0.8 954,155 - ABZR87_RS20345 0.30 -1.8 954,199 + ABZR87_RS20345 0.34 +0.6 954,199 + ABZR87_RS20345 0.34 -0.7 954,199 + ABZR87_RS20345 0.34 +2.2 954,199 + ABZR87_RS20345 0.34 +0.5 954,200 - ABZR87_RS20345 0.34 +0.1 954,200 - ABZR87_RS20345 0.34 -0.5 954,200 - ABZR87_RS20345 0.34 -0.2 954,434 - ABZR87_RS20345 0.56 +1.9 954,434 - ABZR87_RS20345 0.56 -0.2 954,537 - ABZR87_RS20345 0.66 +0.1 954,537 - ABZR87_RS20345 0.66 -0.4 954,550 + ABZR87_RS20345 0.67 +1.2 954,598 + ABZR87_RS20345 0.72 +1.7 954,640 + ABZR87_RS20345 0.76 +1.2 954,640 + ABZR87_RS20345 0.76 -0.1 954,640 + ABZR87_RS20345 0.76 +0.6 954,640 + ABZR87_RS20345 0.76 -2.1
Or see this region's nucleotide sequence