Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20335

Experiment: rhizosphere sample 9; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20330 and ABZR87_RS20335 are separated by 100 nucleotidesABZR87_RS20335 and ABZR87_RS20340 are separated by 27 nucleotides ABZR87_RS20330: ABZR87_RS20330 - MFS transporter, at 949,661 to 951,013 _RS20330 ABZR87_RS20335: ABZR87_RS20335 - aldehyde dehydrogenase (NADP(+)), at 951,114 to 952,685 _RS20335 ABZR87_RS20340: ABZR87_RS20340 - 5-dehydro-4-deoxyglucarate dehydratase, at 952,713 to 953,651 _RS20340 Position (kb) 951 952 953Strain fitness (log2 ratio) -2 -1 0 1 2at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on - strand, within ABZR87_RS20330at 950.220 kb on + strand, within ABZR87_RS20330at 950.220 kb on + strand, within ABZR87_RS20330at 950.221 kb on - strand, within ABZR87_RS20330at 950.232 kb on + strand, within ABZR87_RS20330at 950.233 kb on - strand, within ABZR87_RS20330at 950.274 kb on + strand, within ABZR87_RS20330at 950.320 kb on + strand, within ABZR87_RS20330at 950.320 kb on + strand, within ABZR87_RS20330at 950.321 kb on - strand, within ABZR87_RS20330at 950.321 kb on - strand, within ABZR87_RS20330at 950.349 kb on + strand, within ABZR87_RS20330at 950.350 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.674 kb on + strand, within ABZR87_RS20330at 950.736 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.797 kb on - strand, within ABZR87_RS20330at 950.823 kb on + strand, within ABZR87_RS20330at 950.901 kb on + strandat 950.901 kb on + strandat 950.901 kb on + strandat 950.901 kb on + strandat 950.920 kb on + strandat 950.921 kb on - strandat 951.097 kb on - strandat 951.205 kb on + strandat 951.559 kb on + strand, within ABZR87_RS20335at 951.559 kb on + strand, within ABZR87_RS20335at 951.560 kb on - strand, within ABZR87_RS20335at 951.560 kb on - strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.783 kb on - strand, within ABZR87_RS20335at 951.820 kb on + strand, within ABZR87_RS20335at 951.820 kb on + strand, within ABZR87_RS20335at 951.820 kb on + strand, within ABZR87_RS20335at 951.821 kb on - strand, within ABZR87_RS20335at 951.821 kb on - strand, within ABZR87_RS20335at 951.821 kb on - strand, within ABZR87_RS20335at 951.901 kb on + strand, within ABZR87_RS20335at 951.902 kb on - strand, within ABZR87_RS20335at 951.902 kb on - strand, within ABZR87_RS20335at 952.644 kb on + strandat 952.645 kb on - strandat 952.685 kb on + strandat 952.864 kb on + strand, within ABZR87_RS20340at 952.894 kb on + strand, within ABZR87_RS20340at 952.924 kb on + strand, within ABZR87_RS20340at 952.960 kb on + strand, within ABZR87_RS20340at 952.968 kb on + strand, within ABZR87_RS20340at 952.969 kb on - strand, within ABZR87_RS20340at 953.009 kb on - strand, within ABZR87_RS20340at 953.009 kb on - strand, within ABZR87_RS20340at 953.033 kb on - strand, within ABZR87_RS20340at 953.033 kb on - strand, within ABZR87_RS20340at 953.074 kb on + strand, within ABZR87_RS20340at 953.074 kb on + strand, within ABZR87_RS20340at 953.074 kb on + strand, within ABZR87_RS20340at 953.101 kb on + strand, within ABZR87_RS20340at 953.101 kb on + strand, within ABZR87_RS20340at 953.102 kb on - strand, within ABZR87_RS20340at 953.102 kb on - strand, within ABZR87_RS20340at 953.218 kb on + strand, within ABZR87_RS20340at 953.218 kb on + strand, within ABZR87_RS20340at 953.218 kb on + strand, within ABZR87_RS20340at 953.299 kb on + strand, within ABZR87_RS20340at 953.300 kb on - strand, within ABZR87_RS20340at 953.354 kb on - strand, within ABZR87_RS20340at 953.542 kb on + strand, within ABZR87_RS20340at 953.543 kb on - strand, within ABZR87_RS20340at 953.633 kb on + strandat 953.634 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
remove
950,172 + ABZR87_RS20330 0.38 -0.2
950,172 + ABZR87_RS20330 0.38 -0.4
950,172 + ABZR87_RS20330 0.38 +0.2
950,172 + ABZR87_RS20330 0.38 +1.0
950,172 - ABZR87_RS20330 0.38 -0.0
950,220 + ABZR87_RS20330 0.41 -0.8
950,220 + ABZR87_RS20330 0.41 -1.2
950,221 - ABZR87_RS20330 0.41 -0.7
950,232 + ABZR87_RS20330 0.42 -1.7
950,233 - ABZR87_RS20330 0.42 -1.4
950,274 + ABZR87_RS20330 0.45 +0.1
950,320 + ABZR87_RS20330 0.49 +0.7
950,320 + ABZR87_RS20330 0.49 +0.7
950,321 - ABZR87_RS20330 0.49 +0.9
950,321 - ABZR87_RS20330 0.49 +0.8
950,349 + ABZR87_RS20330 0.51 -0.3
950,350 - ABZR87_RS20330 0.51 -1.0
950,450 - ABZR87_RS20330 0.58 -0.2
950,450 - ABZR87_RS20330 0.58 +2.0
950,450 - ABZR87_RS20330 0.58 -0.3
950,674 + ABZR87_RS20330 0.75 -0.4
950,736 + ABZR87_RS20330 0.79 -0.4
950,796 + ABZR87_RS20330 0.84 +0.3
950,796 + ABZR87_RS20330 0.84 +0.2
950,796 + ABZR87_RS20330 0.84 -1.4
950,796 + ABZR87_RS20330 0.84 -0.8
950,797 - ABZR87_RS20330 0.84 -0.7
950,823 + ABZR87_RS20330 0.86 +0.2
950,901 + +0.8
950,901 + +2.4
950,901 + +2.0
950,901 + +0.6
950,920 + +1.5
950,921 - +0.7
951,097 - -0.0
951,205 + +0.1
951,559 + ABZR87_RS20335 0.28 -1.0
951,559 + ABZR87_RS20335 0.28 -0.1
951,560 - ABZR87_RS20335 0.28 +0.4
951,560 - ABZR87_RS20335 0.28 +0.6
951,658 + ABZR87_RS20335 0.35 +2.2
951,658 + ABZR87_RS20335 0.35 -2.6
951,658 + ABZR87_RS20335 0.35 -0.0
951,658 + ABZR87_RS20335 0.35 +0.9
951,783 - ABZR87_RS20335 0.43 +0.5
951,820 + ABZR87_RS20335 0.45 -0.5
951,820 + ABZR87_RS20335 0.45 +1.1
951,820 + ABZR87_RS20335 0.45 -0.1
951,821 - ABZR87_RS20335 0.45 -0.9
951,821 - ABZR87_RS20335 0.45 -0.2
951,821 - ABZR87_RS20335 0.45 -1.0
951,901 + ABZR87_RS20335 0.50 +1.7
951,902 - ABZR87_RS20335 0.50 -0.4
951,902 - ABZR87_RS20335 0.50 -1.1
952,644 + +0.5
952,645 - +0.7
952,685 + -0.2
952,864 + ABZR87_RS20340 0.16 +1.0
952,894 + ABZR87_RS20340 0.19 +2.3
952,924 + ABZR87_RS20340 0.22 -0.6
952,960 + ABZR87_RS20340 0.26 -1.3
952,968 + ABZR87_RS20340 0.27 +0.1
952,969 - ABZR87_RS20340 0.27 +0.9
953,009 - ABZR87_RS20340 0.32 -1.0
953,009 - ABZR87_RS20340 0.32 -1.0
953,033 - ABZR87_RS20340 0.34 -0.2
953,033 - ABZR87_RS20340 0.34 -1.0
953,074 + ABZR87_RS20340 0.38 -0.7
953,074 + ABZR87_RS20340 0.38 +0.8
953,074 + ABZR87_RS20340 0.38 -1.8
953,101 + ABZR87_RS20340 0.41 -0.4
953,101 + ABZR87_RS20340 0.41 +0.6
953,102 - ABZR87_RS20340 0.41 +0.0
953,102 - ABZR87_RS20340 0.41 -1.4
953,218 + ABZR87_RS20340 0.54 -0.1
953,218 + ABZR87_RS20340 0.54 +1.3
953,218 + ABZR87_RS20340 0.54 +1.1
953,299 + ABZR87_RS20340 0.62 +1.6
953,300 - ABZR87_RS20340 0.63 -0.1
953,354 - ABZR87_RS20340 0.68 -0.4
953,542 + ABZR87_RS20340 0.88 -2.1
953,543 - ABZR87_RS20340 0.88 -0.3
953,633 + +0.6
953,634 - +2.2

Or see this region's nucleotide sequence