Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20305 and ABZR87_RS20310 are separated by 52 nucleotides ABZR87_RS20310 and ABZR87_RS20315 are separated by 4 nucleotides ABZR87_RS20315 and ABZR87_RS20320 are separated by 1 nucleotides
ABZR87_RS20305: ABZR87_RS20305 - MFS transporter, at 943,482 to 944,783
_RS20305
ABZR87_RS20310: ABZR87_RS20310 - SMP-30/gluconolactonase/LRE family protein, at 944,836 to 945,738
_RS20310
ABZR87_RS20315: ABZR87_RS20315 - NAD(P)-dependent oxidoreductase, at 945,743 to 946,588
_RS20315
ABZR87_RS20320: ABZR87_RS20320 - galactarate dehydratase, at 946,590 to 948,191
_RS20320
Position (kb) 945
946
947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.827 kb on + strand at 944.860 kb on + strand at 944.861 kb on - strand at 944.988 kb on + strand, within ABZR87_RS20310 at 944.989 kb on - strand, within ABZR87_RS20310 at 944.989 kb on - strand, within ABZR87_RS20310 at 945.068 kb on + strand, within ABZR87_RS20310 at 945.069 kb on - strand, within ABZR87_RS20310 at 945.218 kb on + strand, within ABZR87_RS20310 at 945.218 kb on + strand, within ABZR87_RS20310 at 945.218 kb on + strand, within ABZR87_RS20310 at 945.218 kb on + strand, within ABZR87_RS20310 at 945.218 kb on + strand, within ABZR87_RS20310 at 945.218 kb on + strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.219 kb on - strand, within ABZR87_RS20310 at 945.323 kb on + strand, within ABZR87_RS20310 at 945.323 kb on + strand, within ABZR87_RS20310 at 945.444 kb on + strand, within ABZR87_RS20310 at 945.547 kb on + strand, within ABZR87_RS20310 at 945.548 kb on - strand, within ABZR87_RS20310 at 945.548 kb on - strand, within ABZR87_RS20310 at 945.548 kb on - strand, within ABZR87_RS20310 at 945.549 kb on + strand, within ABZR87_RS20310 at 945.549 kb on + strand, within ABZR87_RS20310 at 945.550 kb on - strand, within ABZR87_RS20310 at 945.550 kb on - strand, within ABZR87_RS20310 at 945.724 kb on + strand at 945.724 kb on + strand at 945.724 kb on + strand at 945.724 kb on + strand at 945.725 kb on - strand at 945.725 kb on - strand at 945.786 kb on + strand at 945.862 kb on + strand, within ABZR87_RS20315 at 945.930 kb on + strand, within ABZR87_RS20315 at 945.931 kb on - strand, within ABZR87_RS20315 at 945.940 kb on + strand, within ABZR87_RS20315 at 945.940 kb on + strand, within ABZR87_RS20315 at 945.941 kb on - strand, within ABZR87_RS20315 at 945.941 kb on - strand, within ABZR87_RS20315 at 946.092 kb on + strand, within ABZR87_RS20315 at 946.119 kb on - strand, within ABZR87_RS20315 at 946.119 kb on - strand, within ABZR87_RS20315 at 946.135 kb on - strand, within ABZR87_RS20315 at 946.137 kb on + strand, within ABZR87_RS20315 at 946.138 kb on - strand, within ABZR87_RS20315 at 946.138 kb on - strand, within ABZR87_RS20315 at 946.189 kb on - strand, within ABZR87_RS20315 at 946.189 kb on - strand, within ABZR87_RS20315 at 946.257 kb on + strand, within ABZR87_RS20315 at 946.258 kb on - strand, within ABZR87_RS20315 at 946.267 kb on - strand, within ABZR87_RS20315 at 946.436 kb on + strand, within ABZR87_RS20315 at 946.436 kb on + strand, within ABZR87_RS20315 at 946.437 kb on - strand, within ABZR87_RS20315 at 946.437 kb on - strand, within ABZR87_RS20315 at 946.588 kb on + strand at 946.589 kb on - strand at 946.589 kb on - strand at 946.589 kb on - strand at 946.589 kb on - strand at 946.932 kb on + strand, within ABZR87_RS20320 at 946.932 kb on + strand, within ABZR87_RS20320 at 946.933 kb on - strand, within ABZR87_RS20320 at 946.933 kb on - strand, within ABZR87_RS20320 at 947.098 kb on + strand, within ABZR87_RS20320 at 947.098 kb on + strand, within ABZR87_RS20320 at 947.099 kb on - strand, within ABZR87_RS20320 at 947.099 kb on - strand, within ABZR87_RS20320 at 947.099 kb on - strand, within ABZR87_RS20320 at 947.108 kb on - strand, within ABZR87_RS20320 at 947.108 kb on - strand, within ABZR87_RS20320
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 944,827 + +0.4 944,860 + -0.3 944,861 - +0.6 944,988 + ABZR87_RS20310 0.17 +0.2 944,989 - ABZR87_RS20310 0.17 -1.1 944,989 - ABZR87_RS20310 0.17 -0.0 945,068 + ABZR87_RS20310 0.26 -0.5 945,069 - ABZR87_RS20310 0.26 -1.9 945,218 + ABZR87_RS20310 0.42 +0.2 945,218 + ABZR87_RS20310 0.42 +0.1 945,218 + ABZR87_RS20310 0.42 -0.6 945,218 + ABZR87_RS20310 0.42 +0.9 945,218 + ABZR87_RS20310 0.42 -0.2 945,218 + ABZR87_RS20310 0.42 +0.3 945,219 - ABZR87_RS20310 0.42 -0.4 945,219 - ABZR87_RS20310 0.42 -0.8 945,219 - ABZR87_RS20310 0.42 +2.2 945,219 - ABZR87_RS20310 0.42 -0.2 945,219 - ABZR87_RS20310 0.42 +0.0 945,219 - ABZR87_RS20310 0.42 +0.3 945,219 - ABZR87_RS20310 0.42 -0.5 945,219 - ABZR87_RS20310 0.42 +0.0 945,323 + ABZR87_RS20310 0.54 -0.4 945,323 + ABZR87_RS20310 0.54 +0.4 945,444 + ABZR87_RS20310 0.67 -0.5 945,547 + ABZR87_RS20310 0.79 +0.4 945,548 - ABZR87_RS20310 0.79 -0.6 945,548 - ABZR87_RS20310 0.79 -0.0 945,548 - ABZR87_RS20310 0.79 -0.4 945,549 + ABZR87_RS20310 0.79 +0.1 945,549 + ABZR87_RS20310 0.79 +2.2 945,550 - ABZR87_RS20310 0.79 -1.1 945,550 - ABZR87_RS20310 0.79 -1.8 945,724 + -0.1 945,724 + +0.8 945,724 + +0.9 945,724 + -1.8 945,725 - -0.3 945,725 - +0.4 945,786 + +0.7 945,862 + ABZR87_RS20315 0.14 +0.2 945,930 + ABZR87_RS20315 0.22 -1.8 945,931 - ABZR87_RS20315 0.22 -0.6 945,940 + ABZR87_RS20315 0.23 -0.5 945,940 + ABZR87_RS20315 0.23 +0.1 945,941 - ABZR87_RS20315 0.23 +0.9 945,941 - ABZR87_RS20315 0.23 +0.4 946,092 + ABZR87_RS20315 0.41 +0.4 946,119 - ABZR87_RS20315 0.44 -0.1 946,119 - ABZR87_RS20315 0.44 -0.5 946,135 - ABZR87_RS20315 0.46 -1.9 946,137 + ABZR87_RS20315 0.47 +2.0 946,138 - ABZR87_RS20315 0.47 -0.9 946,138 - ABZR87_RS20315 0.47 +0.5 946,189 - ABZR87_RS20315 0.53 -1.1 946,189 - ABZR87_RS20315 0.53 +0.1 946,257 + ABZR87_RS20315 0.61 -0.6 946,258 - ABZR87_RS20315 0.61 +0.4 946,267 - ABZR87_RS20315 0.62 +1.2 946,436 + ABZR87_RS20315 0.82 -2.2 946,436 + ABZR87_RS20315 0.82 -1.1 946,437 - ABZR87_RS20315 0.82 +0.9 946,437 - ABZR87_RS20315 0.82 +1.1 946,588 + -0.6 946,589 - +0.7 946,589 - +0.5 946,589 - -2.6 946,589 - -0.0 946,932 + ABZR87_RS20320 0.21 +1.3 946,932 + ABZR87_RS20320 0.21 +0.3 946,933 - ABZR87_RS20320 0.21 +1.0 946,933 - ABZR87_RS20320 0.21 -0.5 947,098 + ABZR87_RS20320 0.32 +0.4 947,098 + ABZR87_RS20320 0.32 -1.9 947,099 - ABZR87_RS20320 0.32 +0.2 947,099 - ABZR87_RS20320 0.32 -0.0 947,099 - ABZR87_RS20320 0.32 +0.0 947,108 - ABZR87_RS20320 0.32 -1.4 947,108 - ABZR87_RS20320 0.32 -0.1
Or see this region's nucleotide sequence