Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20020 and ABZR87_RS20025 are separated by 173 nucleotides ABZR87_RS20025 and ABZR87_RS20030 overlap by 4 nucleotides
ABZR87_RS20020: ABZR87_RS20020 - magnesium-translocating P-type ATPase, at 868,333 to 870,939
_RS20020
ABZR87_RS20025: ABZR87_RS20025 - response regulator transcription factor, at 871,113 to 871,760
_RS20025
ABZR87_RS20030: ABZR87_RS20030 - PAS domain-containing sensor histidine kinase, at 871,757 to 873,145
_RS20030
Position (kb) 871
872 Strain fitness (log2 ratio) -2
-1
0
1
2 at 870.120 kb on + strand, within ABZR87_RS20020 at 870.120 kb on + strand, within ABZR87_RS20020 at 870.168 kb on + strand, within ABZR87_RS20020 at 870.168 kb on + strand, within ABZR87_RS20020 at 870.201 kb on - strand, within ABZR87_RS20020 at 870.273 kb on - strand, within ABZR87_RS20020 at 870.310 kb on - strand, within ABZR87_RS20020 at 870.339 kb on + strand, within ABZR87_RS20020 at 870.791 kb on + strand at 870.978 kb on + strand at 870.979 kb on - strand at 870.979 kb on - strand at 871.114 kb on + strand at 871.114 kb on + strand at 871.115 kb on - strand at 871.115 kb on - strand at 871.115 kb on - strand at 871.121 kb on + strand at 871.121 kb on + strand at 871.122 kb on - strand at 871.150 kb on - strand at 871.150 kb on - strand at 871.213 kb on + strand, within ABZR87_RS20025 at 871.213 kb on + strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.291 kb on + strand, within ABZR87_RS20025 at 871.292 kb on - strand, within ABZR87_RS20025 at 871.390 kb on + strand, within ABZR87_RS20025 at 871.390 kb on + strand, within ABZR87_RS20025 at 871.390 kb on + strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.460 kb on - strand, within ABZR87_RS20025 at 871.460 kb on - strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.802 kb on + strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.818 kb on - strand at 872.005 kb on + strand, within ABZR87_RS20030 at 872.006 kb on - strand, within ABZR87_RS20030 at 872.155 kb on + strand, within ABZR87_RS20030 at 872.155 kb on + strand, within ABZR87_RS20030 at 872.184 kb on - strand, within ABZR87_RS20030 at 872.569 kb on + strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.678 kb on - strand, within ABZR87_RS20030
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 870,120 + ABZR87_RS20020 0.69 -0.4 870,120 + ABZR87_RS20020 0.69 -2.1 870,168 + ABZR87_RS20020 0.70 -0.6 870,168 + ABZR87_RS20020 0.70 +0.6 870,201 - ABZR87_RS20020 0.72 -0.1 870,273 - ABZR87_RS20020 0.74 -0.4 870,310 - ABZR87_RS20020 0.76 +0.1 870,339 + ABZR87_RS20020 0.77 -0.6 870,791 + -0.7 870,978 + +0.0 870,979 - -2.0 870,979 - +0.2 871,114 + +0.2 871,114 + -0.9 871,115 - -0.1 871,115 - -1.7 871,115 - +0.1 871,121 + -0.1 871,121 + -0.2 871,122 - -1.0 871,150 - -0.8 871,150 - -1.8 871,213 + ABZR87_RS20025 0.15 +1.0 871,213 + ABZR87_RS20025 0.15 -0.5 871,214 - ABZR87_RS20025 0.16 +0.6 871,214 - ABZR87_RS20025 0.16 +1.0 871,214 - ABZR87_RS20025 0.16 +1.1 871,214 - ABZR87_RS20025 0.16 -0.4 871,214 - ABZR87_RS20025 0.16 +0.4 871,214 - ABZR87_RS20025 0.16 +0.2 871,214 - ABZR87_RS20025 0.16 -1.3 871,291 + ABZR87_RS20025 0.27 -0.5 871,292 - ABZR87_RS20025 0.28 +0.3 871,390 + ABZR87_RS20025 0.43 -0.5 871,390 + ABZR87_RS20025 0.43 -0.8 871,390 + ABZR87_RS20025 0.43 +0.4 871,391 - ABZR87_RS20025 0.43 +1.6 871,391 - ABZR87_RS20025 0.43 -0.1 871,391 - ABZR87_RS20025 0.43 +0.3 871,391 - ABZR87_RS20025 0.43 +1.0 871,391 - ABZR87_RS20025 0.43 -0.1 871,460 - ABZR87_RS20025 0.54 +1.9 871,460 - ABZR87_RS20025 0.54 +2.2 871,495 + ABZR87_RS20025 0.59 -0.1 871,495 + ABZR87_RS20025 0.59 -0.1 871,495 + ABZR87_RS20025 0.59 -1.8 871,495 + ABZR87_RS20025 0.59 -1.6 871,496 - ABZR87_RS20025 0.59 -0.8 871,496 - ABZR87_RS20025 0.59 -0.0 871,496 - ABZR87_RS20025 0.59 -0.1 871,496 - ABZR87_RS20025 0.59 -0.5 871,496 - ABZR87_RS20025 0.59 -2.4 871,802 + -1.9 871,803 - +0.9 871,803 - -0.0 871,803 - -0.3 871,803 - +0.5 871,818 - +0.2 872,005 + ABZR87_RS20030 0.18 -0.3 872,006 - ABZR87_RS20030 0.18 -0.0 872,155 + ABZR87_RS20030 0.29 +1.0 872,155 + ABZR87_RS20030 0.29 -0.3 872,184 - ABZR87_RS20030 0.31 +0.8 872,569 + ABZR87_RS20030 0.58 +0.1 872,570 - ABZR87_RS20030 0.59 -1.9 872,570 - ABZR87_RS20030 0.59 +0.1 872,570 - ABZR87_RS20030 0.59 +0.1 872,570 - ABZR87_RS20030 0.59 +1.3 872,677 + ABZR87_RS20030 0.66 +1.4 872,677 + ABZR87_RS20030 0.66 -0.7 872,677 + ABZR87_RS20030 0.66 +0.4 872,678 - ABZR87_RS20030 0.66 -0.4
Or see this region's nucleotide sequence