Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19875 and ABZR87_RS19880 are separated by 680 nucleotides ABZR87_RS19880 and ABZR87_RS19885 are separated by 0 nucleotides
ABZR87_RS19875: ABZR87_RS19875 - gluconate 2-dehydrogenase subunit 3 family protein, at 833,031 to 833,900
_RS19875
ABZR87_RS19880: ABZR87_RS19880 - alpha/beta fold hydrolase, at 834,581 to 836,329
_RS19880
ABZR87_RS19885: ABZR87_RS19885 - efflux transporter outer membrane subunit, at 836,330 to 837,844
_RS19885
Position (kb) 834
835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 833.823 kb on + strand at 833.824 kb on - strand at 833.824 kb on - strand at 833.824 kb on - strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 834.073 kb on + strand at 834.074 kb on - strand at 834.074 kb on - strand at 834.074 kb on - strand at 834.248 kb on + strand at 834.248 kb on + strand at 834.249 kb on - strand at 834.249 kb on - strand at 834.375 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.527 kb on + strand at 834.541 kb on + strand at 834.541 kb on + strand at 834.541 kb on + strand at 834.541 kb on + strand at 834.542 kb on - strand at 834.542 kb on - strand at 834.553 kb on + strand at 834.554 kb on - strand at 834.554 kb on - strand at 834.554 kb on - strand at 834.630 kb on + strand at 834.749 kb on + strand at 834.749 kb on + strand at 834.749 kb on + strand at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.885 kb on + strand, within ABZR87_RS19880 at 834.885 kb on + strand, within ABZR87_RS19880 at 834.886 kb on - strand, within ABZR87_RS19880 at 834.886 kb on - strand, within ABZR87_RS19880 at 835.174 kb on + strand, within ABZR87_RS19880 at 835.174 kb on + strand, within ABZR87_RS19880 at 835.174 kb on + strand, within ABZR87_RS19880 at 835.175 kb on - strand, within ABZR87_RS19880 at 835.175 kb on - strand, within ABZR87_RS19880 at 835.175 kb on - strand, within ABZR87_RS19880 at 835.175 kb on - strand, within ABZR87_RS19880 at 835.175 kb on - strand, within ABZR87_RS19880 at 835.247 kb on + strand, within ABZR87_RS19880 at 835.313 kb on + strand, within ABZR87_RS19880 at 835.313 kb on + strand, within ABZR87_RS19880 at 835.313 kb on + strand, within ABZR87_RS19880 at 835.314 kb on - strand, within ABZR87_RS19880 at 835.314 kb on - strand, within ABZR87_RS19880 at 835.314 kb on - strand, within ABZR87_RS19880 at 835.314 kb on - strand, within ABZR87_RS19880 at 835.314 kb on - strand, within ABZR87_RS19880 at 835.316 kb on + strand, within ABZR87_RS19880 at 835.316 kb on + strand, within ABZR87_RS19880 at 835.316 kb on + strand, within ABZR87_RS19880 at 835.316 kb on + strand, within ABZR87_RS19880 at 835.316 kb on + strand, within ABZR87_RS19880 at 835.316 kb on + strand, within ABZR87_RS19880 at 835.316 kb on + strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.317 kb on - strand, within ABZR87_RS19880 at 835.439 kb on + strand, within ABZR87_RS19880 at 835.439 kb on + strand, within ABZR87_RS19880 at 835.439 kb on + strand, within ABZR87_RS19880 at 835.439 kb on + strand, within ABZR87_RS19880 at 835.439 kb on + strand, within ABZR87_RS19880 at 835.440 kb on - strand, within ABZR87_RS19880 at 835.440 kb on - strand, within ABZR87_RS19880 at 835.440 kb on - strand, within ABZR87_RS19880 at 835.503 kb on + strand, within ABZR87_RS19880 at 835.503 kb on + strand, within ABZR87_RS19880 at 835.503 kb on + strand, within ABZR87_RS19880 at 835.504 kb on - strand, within ABZR87_RS19880 at 835.504 kb on - strand, within ABZR87_RS19880 at 835.700 kb on + strand, within ABZR87_RS19880 at 835.700 kb on + strand, within ABZR87_RS19880 at 835.701 kb on - strand, within ABZR87_RS19880 at 835.748 kb on + strand, within ABZR87_RS19880 at 835.781 kb on + strand, within ABZR87_RS19880 at 835.781 kb on + strand, within ABZR87_RS19880 at 835.782 kb on - strand, within ABZR87_RS19880 at 835.782 kb on - strand, within ABZR87_RS19880 at 835.868 kb on + strand, within ABZR87_RS19880 at 835.913 kb on + strand, within ABZR87_RS19880 at 835.950 kb on + strand, within ABZR87_RS19880 at 836.012 kb on + strand, within ABZR87_RS19880 at 836.013 kb on - strand, within ABZR87_RS19880 at 836.013 kb on - strand, within ABZR87_RS19880 at 836.013 kb on - strand, within ABZR87_RS19880 at 836.072 kb on - strand, within ABZR87_RS19880 at 836.312 kb on + strand at 836.312 kb on + strand at 836.312 kb on + strand at 836.313 kb on - strand at 836.313 kb on - strand at 836.313 kb on - strand at 836.313 kb on - strand at 836.313 kb on - strand at 836.313 kb on - strand at 836.313 kb on - strand at 836.328 kb on - strand at 836.328 kb on - strand at 836.328 kb on - strand at 836.328 kb on - strand at 836.328 kb on - strand at 836.367 kb on - strand at 836.367 kb on - strand at 836.445 kb on - strand at 836.478 kb on - strand at 836.478 kb on - strand at 836.478 kb on - strand at 836.534 kb on + strand, within ABZR87_RS19885 at 836.534 kb on + strand, within ABZR87_RS19885 at 836.535 kb on - strand, within ABZR87_RS19885 at 836.535 kb on - strand, within ABZR87_RS19885 at 836.535 kb on - strand, within ABZR87_RS19885 at 836.535 kb on - strand, within ABZR87_RS19885 at 836.540 kb on - strand, within ABZR87_RS19885 at 836.751 kb on - strand, within ABZR87_RS19885 at 836.834 kb on + strand, within ABZR87_RS19885 at 836.834 kb on + strand, within ABZR87_RS19885 at 836.834 kb on + strand, within ABZR87_RS19885 at 836.834 kb on + strand, within ABZR87_RS19885 at 836.834 kb on + strand, within ABZR87_RS19885 at 836.835 kb on - strand, within ABZR87_RS19885 at 836.835 kb on - strand, within ABZR87_RS19885 at 836.835 kb on - strand, within ABZR87_RS19885 at 836.835 kb on - strand, within ABZR87_RS19885 at 836.835 kb on - strand, within ABZR87_RS19885 at 836.838 kb on + strand, within ABZR87_RS19885 at 836.838 kb on + strand, within ABZR87_RS19885 at 836.838 kb on + strand, within ABZR87_RS19885 at 836.838 kb on + strand, within ABZR87_RS19885 at 836.838 kb on + strand, within ABZR87_RS19885 at 836.838 kb on + strand, within ABZR87_RS19885 at 836.839 kb on + strand, within ABZR87_RS19885 at 836.839 kb on - strand, within ABZR87_RS19885 at 836.839 kb on - strand, within ABZR87_RS19885 at 836.839 kb on - strand, within ABZR87_RS19885 at 836.839 kb on - strand, within ABZR87_RS19885 at 836.900 kb on + strand, within ABZR87_RS19885 at 836.900 kb on + strand, within ABZR87_RS19885 at 836.900 kb on + strand, within ABZR87_RS19885 at 836.901 kb on - strand, within ABZR87_RS19885 at 836.901 kb on - strand, within ABZR87_RS19885 at 836.953 kb on - strand, within ABZR87_RS19885 at 836.953 kb on - strand, within ABZR87_RS19885 at 837.075 kb on + strand, within ABZR87_RS19885 at 837.075 kb on + strand, within ABZR87_RS19885 at 837.075 kb on + strand, within ABZR87_RS19885 at 837.076 kb on - strand, within ABZR87_RS19885 at 837.324 kb on - strand, within ABZR87_RS19885
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 833,823 + -0.4 833,824 - -2.1 833,824 - +0.3 833,824 - +0.8 833,900 + -1.4 833,900 + -1.6 833,900 + -0.3 833,900 + -0.4 833,900 + -0.8 833,901 - -0.6 833,901 - +1.6 833,901 - -0.1 833,901 - -2.0 833,901 - -0.7 834,073 + -0.2 834,074 - +1.0 834,074 - +1.2 834,074 - +0.8 834,248 + -0.4 834,248 + +3.1 834,249 - +0.9 834,249 - +0.1 834,375 + +0.4 834,388 + -0.6 834,388 + -1.2 834,388 + -1.1 834,388 + +1.9 834,388 + +0.9 834,388 + -0.4 834,389 - +1.1 834,389 - -1.3 834,389 - -0.2 834,389 - -0.1 834,389 - +0.7 834,389 - +0.2 834,389 - +0.4 834,479 + +0.4 834,479 + +0.6 834,479 + +0.6 834,480 - -0.3 834,480 - -0.9 834,480 - -0.3 834,480 - -0.8 834,480 - +1.2 834,527 + +0.8 834,541 + +1.3 834,541 + +0.6 834,541 + -0.8 834,541 + +0.8 834,542 - -1.2 834,542 - -0.7 834,553 + +0.1 834,554 - -0.8 834,554 - -1.2 834,554 - -1.9 834,630 + +0.4 834,749 + -0.3 834,749 + -0.9 834,749 + -2.7 834,788 + ABZR87_RS19880 0.12 -0.4 834,788 + ABZR87_RS19880 0.12 -1.3 834,788 + ABZR87_RS19880 0.12 +1.0 834,788 + ABZR87_RS19880 0.12 +0.8 834,788 + ABZR87_RS19880 0.12 -0.7 834,788 + ABZR87_RS19880 0.12 -0.9 834,788 + ABZR87_RS19880 0.12 -0.9 834,789 - ABZR87_RS19880 0.12 +0.1 834,789 - ABZR87_RS19880 0.12 +0.5 834,789 - ABZR87_RS19880 0.12 -0.3 834,789 - ABZR87_RS19880 0.12 +0.8 834,885 + ABZR87_RS19880 0.17 -1.5 834,885 + ABZR87_RS19880 0.17 -0.1 834,886 - ABZR87_RS19880 0.17 +2.0 834,886 - ABZR87_RS19880 0.17 +0.1 835,174 + ABZR87_RS19880 0.34 +0.3 835,174 + ABZR87_RS19880 0.34 +0.2 835,174 + ABZR87_RS19880 0.34 +1.0 835,175 - ABZR87_RS19880 0.34 +1.2 835,175 - ABZR87_RS19880 0.34 -1.7 835,175 - ABZR87_RS19880 0.34 -0.3 835,175 - ABZR87_RS19880 0.34 +0.5 835,175 - ABZR87_RS19880 0.34 -0.9 835,247 + ABZR87_RS19880 0.38 -1.7 835,313 + ABZR87_RS19880 0.42 +1.6 835,313 + ABZR87_RS19880 0.42 +0.5 835,313 + ABZR87_RS19880 0.42 -0.8 835,314 - ABZR87_RS19880 0.42 +0.4 835,314 - ABZR87_RS19880 0.42 -0.2 835,314 - ABZR87_RS19880 0.42 +1.0 835,314 - ABZR87_RS19880 0.42 -0.2 835,314 - ABZR87_RS19880 0.42 +0.1 835,316 + ABZR87_RS19880 0.42 -1.4 835,316 + ABZR87_RS19880 0.42 -2.2 835,316 + ABZR87_RS19880 0.42 -1.2 835,316 + ABZR87_RS19880 0.42 +0.2 835,316 + ABZR87_RS19880 0.42 -0.6 835,316 + ABZR87_RS19880 0.42 -1.0 835,316 + ABZR87_RS19880 0.42 -2.0 835,317 - ABZR87_RS19880 0.42 +1.0 835,317 - ABZR87_RS19880 0.42 -0.8 835,317 - ABZR87_RS19880 0.42 +0.1 835,317 - ABZR87_RS19880 0.42 -1.6 835,317 - ABZR87_RS19880 0.42 -1.9 835,317 - ABZR87_RS19880 0.42 -0.4 835,317 - ABZR87_RS19880 0.42 +0.1 835,317 - ABZR87_RS19880 0.42 -0.5 835,317 - ABZR87_RS19880 0.42 +0.1 835,317 - ABZR87_RS19880 0.42 -0.3 835,317 - ABZR87_RS19880 0.42 -0.8 835,317 - ABZR87_RS19880 0.42 -0.7 835,439 + ABZR87_RS19880 0.49 +0.4 835,439 + ABZR87_RS19880 0.49 +1.1 835,439 + ABZR87_RS19880 0.49 -0.3 835,439 + ABZR87_RS19880 0.49 +1.1 835,439 + ABZR87_RS19880 0.49 -0.7 835,440 - ABZR87_RS19880 0.49 +0.3 835,440 - ABZR87_RS19880 0.49 -0.6 835,440 - ABZR87_RS19880 0.49 -0.4 835,503 + ABZR87_RS19880 0.53 +0.1 835,503 + ABZR87_RS19880 0.53 +0.4 835,503 + ABZR87_RS19880 0.53 -0.3 835,504 - ABZR87_RS19880 0.53 -0.6 835,504 - ABZR87_RS19880 0.53 +0.0 835,700 + ABZR87_RS19880 0.64 -0.2 835,700 + ABZR87_RS19880 0.64 +0.6 835,701 - ABZR87_RS19880 0.64 +0.1 835,748 + ABZR87_RS19880 0.67 -0.1 835,781 + ABZR87_RS19880 0.69 -0.0 835,781 + ABZR87_RS19880 0.69 +0.2 835,782 - ABZR87_RS19880 0.69 -0.4 835,782 - ABZR87_RS19880 0.69 -0.0 835,868 + ABZR87_RS19880 0.74 -0.8 835,913 + ABZR87_RS19880 0.76 +0.4 835,950 + ABZR87_RS19880 0.78 -0.8 836,012 + ABZR87_RS19880 0.82 -0.1 836,013 - ABZR87_RS19880 0.82 -1.2 836,013 - ABZR87_RS19880 0.82 +0.2 836,013 - ABZR87_RS19880 0.82 -0.4 836,072 - ABZR87_RS19880 0.85 +0.3 836,312 + -2.3 836,312 + -0.3 836,312 + -0.4 836,313 - +0.5 836,313 - +1.2 836,313 - +0.2 836,313 - +0.2 836,313 - -1.6 836,313 - +1.5 836,313 - +1.8 836,328 - -0.0 836,328 - -0.1 836,328 - +0.2 836,328 - -2.2 836,328 - -0.3 836,367 - +3.1 836,367 - -0.7 836,445 - +0.8 836,478 - -0.3 836,478 - +0.9 836,478 - -0.9 836,534 + ABZR87_RS19885 0.13 -0.8 836,534 + ABZR87_RS19885 0.13 -0.1 836,535 - ABZR87_RS19885 0.14 +1.5 836,535 - ABZR87_RS19885 0.14 -0.4 836,535 - ABZR87_RS19885 0.14 -0.1 836,535 - ABZR87_RS19885 0.14 +1.5 836,540 - ABZR87_RS19885 0.14 -0.4 836,751 - ABZR87_RS19885 0.28 +0.1 836,834 + ABZR87_RS19885 0.33 +0.0 836,834 + ABZR87_RS19885 0.33 -1.4 836,834 + ABZR87_RS19885 0.33 +2.0 836,834 + ABZR87_RS19885 0.33 -0.5 836,834 + ABZR87_RS19885 0.33 +0.4 836,835 - ABZR87_RS19885 0.33 -0.5 836,835 - ABZR87_RS19885 0.33 -0.8 836,835 - ABZR87_RS19885 0.33 -0.9 836,835 - ABZR87_RS19885 0.33 -0.4 836,835 - ABZR87_RS19885 0.33 +0.0 836,838 + ABZR87_RS19885 0.34 -0.2 836,838 + ABZR87_RS19885 0.34 +0.0 836,838 + ABZR87_RS19885 0.34 -1.9 836,838 + ABZR87_RS19885 0.34 +1.0 836,838 + ABZR87_RS19885 0.34 -0.3 836,838 + ABZR87_RS19885 0.34 -2.5 836,839 + ABZR87_RS19885 0.34 -0.4 836,839 - ABZR87_RS19885 0.34 +0.3 836,839 - ABZR87_RS19885 0.34 -0.7 836,839 - ABZR87_RS19885 0.34 -0.8 836,839 - ABZR87_RS19885 0.34 -0.2 836,900 + ABZR87_RS19885 0.38 +0.8 836,900 + ABZR87_RS19885 0.38 -0.8 836,900 + ABZR87_RS19885 0.38 -0.8 836,901 - ABZR87_RS19885 0.38 -0.3 836,901 - ABZR87_RS19885 0.38 -1.4 836,953 - ABZR87_RS19885 0.41 -0.5 836,953 - ABZR87_RS19885 0.41 -0.5 837,075 + ABZR87_RS19885 0.49 +0.8 837,075 + ABZR87_RS19885 0.49 +1.2 837,075 + ABZR87_RS19885 0.49 +0.8 837,076 - ABZR87_RS19885 0.49 +0.3 837,324 - ABZR87_RS19885 0.66 +0.4
Or see this region's nucleotide sequence