Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19640 and ABZR87_RS19645 are separated by 32 nucleotides ABZR87_RS19645 and ABZR87_RS19650 are separated by 47 nucleotides ABZR87_RS19650 and ABZR87_RS19655 are separated by 194 nucleotides
ABZR87_RS19640: ABZR87_RS19640 - patatin-like phospholipase family protein, at 780,694 to 781,956
_RS19640
ABZR87_RS19645: ABZR87_RS19645 - 3-hydroxybutyrate dehydrogenase, at 781,989 to 782,774
_RS19645
ABZR87_RS19650: ABZR87_RS19650 - acetoacetate decarboxylase, at 782,822 to 783,565
_RS19650
ABZR87_RS19655: ABZR87_RS19655 - PLP-dependent aminotransferase family protein, at 783,760 to 785,163
_RS19655
Position (kb) 781
782
783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 781.062 kb on + strand, within ABZR87_RS19640 at 781.063 kb on - strand, within ABZR87_RS19640 at 781.073 kb on + strand, within ABZR87_RS19640 at 781.074 kb on - strand, within ABZR87_RS19640 at 781.113 kb on + strand, within ABZR87_RS19640 at 781.113 kb on + strand, within ABZR87_RS19640 at 781.113 kb on + strand, within ABZR87_RS19640 at 781.114 kb on - strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.193 kb on + strand, within ABZR87_RS19640 at 781.194 kb on - strand, within ABZR87_RS19640 at 781.194 kb on - strand, within ABZR87_RS19640 at 781.194 kb on - strand, within ABZR87_RS19640 at 781.194 kb on - strand, within ABZR87_RS19640 at 781.232 kb on + strand, within ABZR87_RS19640 at 781.233 kb on - strand, within ABZR87_RS19640 at 781.233 kb on - strand, within ABZR87_RS19640 at 781.235 kb on + strand, within ABZR87_RS19640 at 781.235 kb on + strand, within ABZR87_RS19640 at 781.235 kb on + strand, within ABZR87_RS19640 at 781.236 kb on - strand, within ABZR87_RS19640 at 781.448 kb on + strand, within ABZR87_RS19640 at 781.448 kb on + strand, within ABZR87_RS19640 at 781.449 kb on - strand, within ABZR87_RS19640 at 781.449 kb on - strand, within ABZR87_RS19640 at 781.451 kb on + strand, within ABZR87_RS19640 at 781.452 kb on - strand, within ABZR87_RS19640 at 781.452 kb on - strand, within ABZR87_RS19640 at 781.452 kb on - strand, within ABZR87_RS19640 at 781.452 kb on - strand, within ABZR87_RS19640 at 781.452 kb on - strand, within ABZR87_RS19640 at 781.713 kb on + strand, within ABZR87_RS19640 at 781.713 kb on + strand, within ABZR87_RS19640 at 781.714 kb on - strand, within ABZR87_RS19640 at 781.714 kb on - strand, within ABZR87_RS19640 at 781.714 kb on - strand, within ABZR87_RS19640 at 781.796 kb on + strand, within ABZR87_RS19640 at 781.797 kb on - strand, within ABZR87_RS19640 at 781.872 kb on + strand at 781.873 kb on - strand at 781.873 kb on - strand at 781.939 kb on + strand at 781.940 kb on - strand at 781.940 kb on - strand at 781.956 kb on + strand at 781.956 kb on + strand at 781.956 kb on + strand at 781.957 kb on - strand at 781.957 kb on - strand at 781.957 kb on - strand at 781.957 kb on - strand at 781.957 kb on - strand at 781.957 kb on - strand at 781.957 kb on - strand at 781.984 kb on + strand at 781.984 kb on + strand at 781.985 kb on - strand at 782.114 kb on + strand, within ABZR87_RS19645 at 782.243 kb on + strand, within ABZR87_RS19645 at 782.243 kb on + strand, within ABZR87_RS19645 at 782.256 kb on + strand, within ABZR87_RS19645 at 782.305 kb on - strand, within ABZR87_RS19645 at 782.305 kb on - strand, within ABZR87_RS19645 at 782.308 kb on + strand, within ABZR87_RS19645 at 782.308 kb on + strand, within ABZR87_RS19645 at 782.309 kb on - strand, within ABZR87_RS19645 at 782.309 kb on - strand, within ABZR87_RS19645 at 782.356 kb on + strand, within ABZR87_RS19645 at 782.356 kb on + strand, within ABZR87_RS19645 at 782.356 kb on + strand, within ABZR87_RS19645 at 782.356 kb on + strand, within ABZR87_RS19645 at 782.357 kb on - strand, within ABZR87_RS19645 at 782.357 kb on - strand, within ABZR87_RS19645 at 782.357 kb on - strand, within ABZR87_RS19645 at 782.357 kb on - strand, within ABZR87_RS19645 at 782.357 kb on - strand, within ABZR87_RS19645 at 782.357 kb on - strand, within ABZR87_RS19645 at 782.470 kb on + strand, within ABZR87_RS19645 at 782.471 kb on - strand, within ABZR87_RS19645 at 782.471 kb on - strand, within ABZR87_RS19645 at 782.781 kb on - strand at 782.823 kb on + strand at 782.835 kb on + strand at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.001 kb on - strand, within ABZR87_RS19650 at 783.001 kb on - strand, within ABZR87_RS19650 at 783.001 kb on - strand, within ABZR87_RS19650 at 783.123 kb on + strand, within ABZR87_RS19650 at 783.123 kb on + strand, within ABZR87_RS19650 at 783.123 kb on + strand, within ABZR87_RS19650 at 783.124 kb on - strand, within ABZR87_RS19650 at 783.124 kb on - strand, within ABZR87_RS19650 at 783.124 kb on - strand, within ABZR87_RS19650 at 783.273 kb on + strand, within ABZR87_RS19650 at 783.274 kb on - strand, within ABZR87_RS19650 at 783.274 kb on - strand, within ABZR87_RS19650 at 783.274 kb on - strand, within ABZR87_RS19650 at 783.288 kb on + strand, within ABZR87_RS19650 at 783.288 kb on + strand, within ABZR87_RS19650 at 783.288 kb on + strand, within ABZR87_RS19650 at 783.289 kb on - strand, within ABZR87_RS19650 at 783.289 kb on - strand, within ABZR87_RS19650 at 783.289 kb on - strand, within ABZR87_RS19650 at 783.309 kb on + strand, within ABZR87_RS19650 at 783.309 kb on + strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.342 kb on + strand, within ABZR87_RS19650 at 783.342 kb on + strand, within ABZR87_RS19650 at 783.342 kb on + strand, within ABZR87_RS19650 at 783.343 kb on - strand, within ABZR87_RS19650 at 783.343 kb on - strand, within ABZR87_RS19650 at 783.629 kb on + strand at 783.728 kb on + strand at 783.728 kb on + strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 781,062 + ABZR87_RS19640 0.29 -0.3 781,063 - ABZR87_RS19640 0.29 +0.2 781,073 + ABZR87_RS19640 0.30 -0.8 781,074 - ABZR87_RS19640 0.30 -0.9 781,113 + ABZR87_RS19640 0.33 +0.8 781,113 + ABZR87_RS19640 0.33 -0.7 781,113 + ABZR87_RS19640 0.33 +0.1 781,114 - ABZR87_RS19640 0.33 +1.2 781,193 + ABZR87_RS19640 0.40 +0.0 781,193 + ABZR87_RS19640 0.40 -1.5 781,193 + ABZR87_RS19640 0.40 -0.3 781,193 + ABZR87_RS19640 0.40 -0.4 781,193 + ABZR87_RS19640 0.40 +0.5 781,193 + ABZR87_RS19640 0.40 -1.6 781,193 + ABZR87_RS19640 0.40 -0.8 781,193 + ABZR87_RS19640 0.40 +2.0 781,194 - ABZR87_RS19640 0.40 -0.8 781,194 - ABZR87_RS19640 0.40 +1.1 781,194 - ABZR87_RS19640 0.40 -0.2 781,194 - ABZR87_RS19640 0.40 -1.1 781,232 + ABZR87_RS19640 0.43 -0.2 781,233 - ABZR87_RS19640 0.43 -1.9 781,233 - ABZR87_RS19640 0.43 +0.2 781,235 + ABZR87_RS19640 0.43 -2.3 781,235 + ABZR87_RS19640 0.43 -0.5 781,235 + ABZR87_RS19640 0.43 +0.6 781,236 - ABZR87_RS19640 0.43 -1.8 781,448 + ABZR87_RS19640 0.60 +0.6 781,448 + ABZR87_RS19640 0.60 +0.3 781,449 - ABZR87_RS19640 0.60 +0.6 781,449 - ABZR87_RS19640 0.60 +1.1 781,451 + ABZR87_RS19640 0.60 -0.8 781,452 - ABZR87_RS19640 0.60 +0.2 781,452 - ABZR87_RS19640 0.60 -0.2 781,452 - ABZR87_RS19640 0.60 +0.2 781,452 - ABZR87_RS19640 0.60 -0.1 781,452 - ABZR87_RS19640 0.60 -0.2 781,713 + ABZR87_RS19640 0.81 +0.6 781,713 + ABZR87_RS19640 0.81 +0.6 781,714 - ABZR87_RS19640 0.81 +1.6 781,714 - ABZR87_RS19640 0.81 +0.2 781,714 - ABZR87_RS19640 0.81 +1.8 781,796 + ABZR87_RS19640 0.87 -0.0 781,797 - ABZR87_RS19640 0.87 +0.3 781,872 + +0.5 781,873 - -0.2 781,873 - -2.0 781,939 + +0.3 781,940 - -0.9 781,940 - -0.0 781,956 + -0.9 781,956 + -0.2 781,956 + +0.8 781,957 - -0.5 781,957 - +1.0 781,957 - -0.9 781,957 - -0.5 781,957 - -0.8 781,957 - -1.2 781,957 - +0.9 781,984 + -1.6 781,984 + +1.1 781,985 - +1.3 782,114 + ABZR87_RS19645 0.16 +0.7 782,243 + ABZR87_RS19645 0.32 -0.7 782,243 + ABZR87_RS19645 0.32 -0.6 782,256 + ABZR87_RS19645 0.34 -1.1 782,305 - ABZR87_RS19645 0.40 -0.9 782,305 - ABZR87_RS19645 0.40 -0.1 782,308 + ABZR87_RS19645 0.41 -1.1 782,308 + ABZR87_RS19645 0.41 +0.1 782,309 - ABZR87_RS19645 0.41 +0.2 782,309 - ABZR87_RS19645 0.41 -0.1 782,356 + ABZR87_RS19645 0.47 +0.6 782,356 + ABZR87_RS19645 0.47 -0.1 782,356 + ABZR87_RS19645 0.47 +0.9 782,356 + ABZR87_RS19645 0.47 +0.3 782,357 - ABZR87_RS19645 0.47 +0.7 782,357 - ABZR87_RS19645 0.47 +0.3 782,357 - ABZR87_RS19645 0.47 -1.2 782,357 - ABZR87_RS19645 0.47 +0.3 782,357 - ABZR87_RS19645 0.47 -0.6 782,357 - ABZR87_RS19645 0.47 -0.2 782,470 + ABZR87_RS19645 0.61 -0.9 782,471 - ABZR87_RS19645 0.61 -0.5 782,471 - ABZR87_RS19645 0.61 +0.6 782,781 - -0.6 782,823 + -0.9 782,835 + +0.3 783,000 + ABZR87_RS19650 0.24 +1.4 783,000 + ABZR87_RS19650 0.24 +0.4 783,000 + ABZR87_RS19650 0.24 +1.7 783,000 + ABZR87_RS19650 0.24 -1.6 783,000 + ABZR87_RS19650 0.24 +1.8 783,000 + ABZR87_RS19650 0.24 -0.3 783,000 + ABZR87_RS19650 0.24 +1.1 783,000 + ABZR87_RS19650 0.24 +0.5 783,001 - ABZR87_RS19650 0.24 +0.2 783,001 - ABZR87_RS19650 0.24 +0.4 783,001 - ABZR87_RS19650 0.24 -2.1 783,123 + ABZR87_RS19650 0.40 +1.6 783,123 + ABZR87_RS19650 0.40 +0.6 783,123 + ABZR87_RS19650 0.40 -1.3 783,124 - ABZR87_RS19650 0.41 -0.9 783,124 - ABZR87_RS19650 0.41 +0.2 783,124 - ABZR87_RS19650 0.41 -0.8 783,273 + ABZR87_RS19650 0.61 -1.0 783,274 - ABZR87_RS19650 0.61 -0.1 783,274 - ABZR87_RS19650 0.61 -0.3 783,274 - ABZR87_RS19650 0.61 +1.2 783,288 + ABZR87_RS19650 0.63 -1.0 783,288 + ABZR87_RS19650 0.63 +0.4 783,288 + ABZR87_RS19650 0.63 -0.1 783,289 - ABZR87_RS19650 0.63 -0.5 783,289 - ABZR87_RS19650 0.63 +0.3 783,289 - ABZR87_RS19650 0.63 +0.2 783,309 + ABZR87_RS19650 0.65 -0.2 783,309 + ABZR87_RS19650 0.65 +0.8 783,310 - ABZR87_RS19650 0.66 +0.2 783,310 - ABZR87_RS19650 0.66 +0.9 783,310 - ABZR87_RS19650 0.66 +0.3 783,310 - ABZR87_RS19650 0.66 +0.2 783,310 - ABZR87_RS19650 0.66 -1.6 783,310 - ABZR87_RS19650 0.66 -1.3 783,342 + ABZR87_RS19650 0.70 +0.1 783,342 + ABZR87_RS19650 0.70 -1.5 783,342 + ABZR87_RS19650 0.70 -0.2 783,343 - ABZR87_RS19650 0.70 -0.4 783,343 - ABZR87_RS19650 0.70 +0.3 783,629 + -1.6 783,728 + -1.0 783,728 + +0.8 783,729 - -0.2 783,729 - -0.5 783,729 - -2.2 783,729 - -0.3 783,729 - -0.5 783,729 - +0.4
Or see this region's nucleotide sequence