Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19635

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19630 and ABZR87_RS19635 overlap by 4 nucleotidesABZR87_RS19635 and ABZR87_RS19640 are separated by 6 nucleotides ABZR87_RS19630: ABZR87_RS19630 - oxidoreductase, at 777,503 to 778,579 _RS19630 ABZR87_RS19635: ABZR87_RS19635 - cation:proton antiporter, at 778,576 to 780,687 _RS19635 ABZR87_RS19640: ABZR87_RS19640 - patatin-like phospholipase family protein, at 780,694 to 781,956 _RS19640 Position (kb) 778 779 780 781Strain fitness (log2 ratio) -2 -1 0 1 2 3at 778.391 kb on + strand, within ABZR87_RS19630at 778.392 kb on - strand, within ABZR87_RS19630at 778.392 kb on - strand, within ABZR87_RS19630at 778.392 kb on - strand, within ABZR87_RS19630at 778.394 kb on + strand, within ABZR87_RS19630at 778.394 kb on + strand, within ABZR87_RS19630at 778.395 kb on - strand, within ABZR87_RS19630at 778.714 kb on + strandat 778.714 kb on + strandat 778.714 kb on + strandat 778.714 kb on + strandat 778.714 kb on + strandat 778.714 kb on + strandat 778.715 kb on - strandat 778.715 kb on - strandat 778.798 kb on + strand, within ABZR87_RS19635at 778.798 kb on + strand, within ABZR87_RS19635at 778.798 kb on + strand, within ABZR87_RS19635at 778.799 kb on - strand, within ABZR87_RS19635at 778.799 kb on - strand, within ABZR87_RS19635at 778.799 kb on - strand, within ABZR87_RS19635at 778.799 kb on - strand, within ABZR87_RS19635at 778.799 kb on - strand, within ABZR87_RS19635at 778.799 kb on - strand, within ABZR87_RS19635at 778.799 kb on - strand, within ABZR87_RS19635at 778.814 kb on + strand, within ABZR87_RS19635at 779.314 kb on + strand, within ABZR87_RS19635at 779.314 kb on + strand, within ABZR87_RS19635at 779.315 kb on - strand, within ABZR87_RS19635at 779.315 kb on - strand, within ABZR87_RS19635at 779.315 kb on - strand, within ABZR87_RS19635at 779.537 kb on + strand, within ABZR87_RS19635at 779.537 kb on + strand, within ABZR87_RS19635at 779.647 kb on + strand, within ABZR87_RS19635at 779.647 kb on + strand, within ABZR87_RS19635at 779.647 kb on + strand, within ABZR87_RS19635at 779.647 kb on + strand, within ABZR87_RS19635at 779.647 kb on + strand, within ABZR87_RS19635at 779.648 kb on - strand, within ABZR87_RS19635at 779.648 kb on - strand, within ABZR87_RS19635at 779.648 kb on - strand, within ABZR87_RS19635at 779.648 kb on - strand, within ABZR87_RS19635at 779.648 kb on - strand, within ABZR87_RS19635at 779.648 kb on - strand, within ABZR87_RS19635at 779.648 kb on - strand, within ABZR87_RS19635at 779.977 kb on + strand, within ABZR87_RS19635at 779.977 kb on + strand, within ABZR87_RS19635at 779.977 kb on + strand, within ABZR87_RS19635at 779.978 kb on - strand, within ABZR87_RS19635at 779.978 kb on - strand, within ABZR87_RS19635at 779.978 kb on - strand, within ABZR87_RS19635at 780.062 kb on + strand, within ABZR87_RS19635at 780.062 kb on + strand, within ABZR87_RS19635at 780.196 kb on + strand, within ABZR87_RS19635at 780.196 kb on + strand, within ABZR87_RS19635at 780.197 kb on - strand, within ABZR87_RS19635at 780.359 kb on - strand, within ABZR87_RS19635at 780.359 kb on - strand, within ABZR87_RS19635at 780.366 kb on + strand, within ABZR87_RS19635at 780.366 kb on + strand, within ABZR87_RS19635at 780.366 kb on + strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.367 kb on - strand, within ABZR87_RS19635at 780.484 kb on + strandat 780.529 kb on + strandat 780.530 kb on - strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.589 kb on + strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.667 kb on - strandat 780.667 kb on - strandat 780.667 kb on - strandat 780.667 kb on - strandat 780.718 kb on + strandat 780.718 kb on + strandat 780.719 kb on - strandat 780.899 kb on + strand, within ABZR87_RS19640at 780.899 kb on + strand, within ABZR87_RS19640at 780.899 kb on + strand, within ABZR87_RS19640at 780.899 kb on + strand, within ABZR87_RS19640at 780.900 kb on - strand, within ABZR87_RS19640at 780.920 kb on + strand, within ABZR87_RS19640at 780.956 kb on + strand, within ABZR87_RS19640at 780.957 kb on - strand, within ABZR87_RS19640at 780.957 kb on - strand, within ABZR87_RS19640at 780.957 kb on - strand, within ABZR87_RS19640at 781.062 kb on + strand, within ABZR87_RS19640at 781.063 kb on - strand, within ABZR87_RS19640at 781.073 kb on + strand, within ABZR87_RS19640at 781.074 kb on - strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.114 kb on - strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.232 kb on + strand, within ABZR87_RS19640at 781.233 kb on - strand, within ABZR87_RS19640at 781.233 kb on - strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.236 kb on - strand, within ABZR87_RS19640at 781.448 kb on + strand, within ABZR87_RS19640at 781.448 kb on + strand, within ABZR87_RS19640at 781.449 kb on - strand, within ABZR87_RS19640at 781.449 kb on - strand, within ABZR87_RS19640at 781.451 kb on + strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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778,391 + ABZR87_RS19630 0.82 -0.2
778,392 - ABZR87_RS19630 0.83 -0.2
778,392 - ABZR87_RS19630 0.83 +0.7
778,392 - ABZR87_RS19630 0.83 +0.4
778,394 + ABZR87_RS19630 0.83 +0.3
778,394 + ABZR87_RS19630 0.83 -1.2
778,395 - ABZR87_RS19630 0.83 +0.6
778,714 + +0.1
778,714 + -0.7
778,714 + +1.1
778,714 + +0.5
778,714 + +0.9
778,714 + -0.1
778,715 - +0.2
778,715 - +0.0
778,798 + ABZR87_RS19635 0.11 -0.3
778,798 + ABZR87_RS19635 0.11 +1.3
778,798 + ABZR87_RS19635 0.11 +0.4
778,799 - ABZR87_RS19635 0.11 -1.8
778,799 - ABZR87_RS19635 0.11 -1.2
778,799 - ABZR87_RS19635 0.11 -0.8
778,799 - ABZR87_RS19635 0.11 -1.5
778,799 - ABZR87_RS19635 0.11 +0.7
778,799 - ABZR87_RS19635 0.11 -0.7
778,799 - ABZR87_RS19635 0.11 -0.3
778,814 + ABZR87_RS19635 0.11 -0.3
779,314 + ABZR87_RS19635 0.35 -0.6
779,314 + ABZR87_RS19635 0.35 -0.1
779,315 - ABZR87_RS19635 0.35 +0.9
779,315 - ABZR87_RS19635 0.35 -0.3
779,315 - ABZR87_RS19635 0.35 +0.1
779,537 + ABZR87_RS19635 0.46 -0.4
779,537 + ABZR87_RS19635 0.46 +0.0
779,647 + ABZR87_RS19635 0.51 -2.3
779,647 + ABZR87_RS19635 0.51 +1.1
779,647 + ABZR87_RS19635 0.51 +0.2
779,647 + ABZR87_RS19635 0.51 +0.2
779,647 + ABZR87_RS19635 0.51 -0.4
779,648 - ABZR87_RS19635 0.51 +1.9
779,648 - ABZR87_RS19635 0.51 -1.2
779,648 - ABZR87_RS19635 0.51 +0.3
779,648 - ABZR87_RS19635 0.51 -0.4
779,648 - ABZR87_RS19635 0.51 -0.3
779,648 - ABZR87_RS19635 0.51 +2.7
779,648 - ABZR87_RS19635 0.51 +1.0
779,977 + ABZR87_RS19635 0.66 -0.5
779,977 + ABZR87_RS19635 0.66 +0.8
779,977 + ABZR87_RS19635 0.66 -0.9
779,978 - ABZR87_RS19635 0.66 +0.1
779,978 - ABZR87_RS19635 0.66 -0.2
779,978 - ABZR87_RS19635 0.66 -1.0
780,062 + ABZR87_RS19635 0.70 -0.6
780,062 + ABZR87_RS19635 0.70 +2.3
780,196 + ABZR87_RS19635 0.77 +0.8
780,196 + ABZR87_RS19635 0.77 +0.5
780,197 - ABZR87_RS19635 0.77 -0.6
780,359 - ABZR87_RS19635 0.84 -0.5
780,359 - ABZR87_RS19635 0.84 -0.2
780,366 + ABZR87_RS19635 0.85 +0.6
780,366 + ABZR87_RS19635 0.85 +1.2
780,366 + ABZR87_RS19635 0.85 +0.2
780,367 - ABZR87_RS19635 0.85 -0.4
780,367 - ABZR87_RS19635 0.85 -0.6
780,367 - ABZR87_RS19635 0.85 +1.2
780,367 - ABZR87_RS19635 0.85 -0.0
780,367 - ABZR87_RS19635 0.85 +1.7
780,367 - ABZR87_RS19635 0.85 +0.6
780,367 - ABZR87_RS19635 0.85 +0.3
780,484 + -0.9
780,529 + -1.4
780,530 - -0.3
780,589 + -0.1
780,589 + -0.5
780,589 + +1.1
780,589 + -1.6
780,589 + +1.2
780,589 + +2.1
780,590 - +3.2
780,590 - -0.4
780,590 - -0.9
780,590 - -1.5
780,590 - -0.8
780,667 - -0.4
780,667 - +0.3
780,667 - +0.7
780,667 - +1.4
780,718 + -0.9
780,718 + +0.8
780,719 - +0.1
780,899 + ABZR87_RS19640 0.16 +0.9
780,899 + ABZR87_RS19640 0.16 +2.6
780,899 + ABZR87_RS19640 0.16 +0.8
780,899 + ABZR87_RS19640 0.16 +0.1
780,900 - ABZR87_RS19640 0.16 +0.1
780,920 + ABZR87_RS19640 0.18 +0.1
780,956 + ABZR87_RS19640 0.21 +1.0
780,957 - ABZR87_RS19640 0.21 +0.2
780,957 - ABZR87_RS19640 0.21 +0.1
780,957 - ABZR87_RS19640 0.21 -0.2
781,062 + ABZR87_RS19640 0.29 -0.3
781,063 - ABZR87_RS19640 0.29 +0.2
781,073 + ABZR87_RS19640 0.30 -0.8
781,074 - ABZR87_RS19640 0.30 -0.9
781,113 + ABZR87_RS19640 0.33 +0.8
781,113 + ABZR87_RS19640 0.33 -0.7
781,113 + ABZR87_RS19640 0.33 +0.1
781,114 - ABZR87_RS19640 0.33 +1.2
781,193 + ABZR87_RS19640 0.40 +0.0
781,193 + ABZR87_RS19640 0.40 -1.5
781,193 + ABZR87_RS19640 0.40 -0.3
781,193 + ABZR87_RS19640 0.40 -0.4
781,193 + ABZR87_RS19640 0.40 +0.5
781,193 + ABZR87_RS19640 0.40 -1.6
781,193 + ABZR87_RS19640 0.40 -0.8
781,193 + ABZR87_RS19640 0.40 +2.0
781,194 - ABZR87_RS19640 0.40 -0.8
781,194 - ABZR87_RS19640 0.40 +1.1
781,194 - ABZR87_RS19640 0.40 -0.2
781,194 - ABZR87_RS19640 0.40 -1.1
781,232 + ABZR87_RS19640 0.43 -0.2
781,233 - ABZR87_RS19640 0.43 -1.9
781,233 - ABZR87_RS19640 0.43 +0.2
781,235 + ABZR87_RS19640 0.43 -2.3
781,235 + ABZR87_RS19640 0.43 -0.5
781,235 + ABZR87_RS19640 0.43 +0.6
781,236 - ABZR87_RS19640 0.43 -1.8
781,448 + ABZR87_RS19640 0.60 +0.6
781,448 + ABZR87_RS19640 0.60 +0.3
781,449 - ABZR87_RS19640 0.60 +0.6
781,449 - ABZR87_RS19640 0.60 +1.1
781,451 + ABZR87_RS19640 0.60 -0.8
781,452 - ABZR87_RS19640 0.60 +0.2
781,452 - ABZR87_RS19640 0.60 -0.2
781,452 - ABZR87_RS19640 0.60 +0.2
781,452 - ABZR87_RS19640 0.60 -0.1
781,452 - ABZR87_RS19640 0.60 -0.2

Or see this region's nucleotide sequence