Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19415

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19410 and ABZR87_RS19415 are separated by 340 nucleotidesABZR87_RS19415 and ABZR87_RS19420 are separated by 97 nucleotidesABZR87_RS19420 and ABZR87_RS19425 are separated by 149 nucleotides ABZR87_RS19410: ABZR87_RS19410 - alpha/beta hydrolase, at 724,566 to 725,657 _RS19410 ABZR87_RS19415: ABZR87_RS19415 - LysR family transcriptional regulator, at 725,998 to 726,942 _RS19415 ABZR87_RS19420: ABZR87_RS19420 - hypothetical protein, at 727,040 to 727,369 _RS19420 ABZR87_RS19425: ABZR87_RS19425 - Mut7-C RNAse domain-containing protein, at 727,519 to 728,295 _RS19425 Position (kb) 725 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 725.135 kb on + strand, within ABZR87_RS19410at 725.136 kb on - strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.179 kb on + strand, within ABZR87_RS19410at 725.180 kb on - strand, within ABZR87_RS19410at 725.180 kb on - strand, within ABZR87_RS19410at 725.180 kb on - strand, within ABZR87_RS19410at 725.180 kb on - strand, within ABZR87_RS19410at 725.180 kb on - strand, within ABZR87_RS19410at 725.180 kb on - strand, within ABZR87_RS19410at 725.227 kb on + strand, within ABZR87_RS19410at 725.329 kb on + strand, within ABZR87_RS19410at 725.416 kb on + strand, within ABZR87_RS19410at 725.417 kb on - strand, within ABZR87_RS19410at 725.431 kb on + strand, within ABZR87_RS19410at 725.432 kb on - strand, within ABZR87_RS19410at 725.534 kb on + strand, within ABZR87_RS19410at 725.570 kb on - strandat 725.695 kb on + strandat 725.720 kb on + strandat 725.721 kb on - strandat 725.721 kb on - strandat 725.734 kb on + strandat 725.734 kb on + strandat 725.734 kb on + strandat 725.742 kb on + strandat 725.742 kb on + strandat 725.743 kb on - strandat 725.743 kb on - strandat 725.757 kb on + strandat 725.761 kb on + strandat 725.762 kb on - strandat 725.783 kb on - strandat 725.786 kb on + strandat 725.787 kb on - strandat 725.787 kb on - strandat 725.787 kb on - strandat 725.797 kb on + strandat 725.797 kb on + strandat 725.797 kb on + strandat 725.798 kb on - strandat 725.798 kb on - strandat 725.798 kb on - strandat 725.810 kb on - strandat 725.810 kb on - strandat 725.986 kb on - strandat 726.191 kb on - strand, within ABZR87_RS19415at 726.191 kb on - strand, within ABZR87_RS19415at 726.191 kb on - strand, within ABZR87_RS19415at 726.193 kb on + strand, within ABZR87_RS19415at 726.193 kb on + strand, within ABZR87_RS19415at 726.194 kb on - strand, within ABZR87_RS19415at 726.194 kb on - strand, within ABZR87_RS19415at 726.350 kb on - strand, within ABZR87_RS19415at 726.350 kb on - strand, within ABZR87_RS19415at 726.350 kb on - strand, within ABZR87_RS19415at 726.509 kb on - strand, within ABZR87_RS19415at 726.509 kb on - strand, within ABZR87_RS19415at 726.571 kb on + strand, within ABZR87_RS19415at 726.572 kb on - strand, within ABZR87_RS19415at 726.736 kb on + strand, within ABZR87_RS19415at 726.737 kb on - strand, within ABZR87_RS19415at 726.737 kb on - strand, within ABZR87_RS19415at 726.737 kb on - strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.784 kb on - strand, within ABZR87_RS19415at 726.784 kb on - strand, within ABZR87_RS19415at 726.784 kb on - strand, within ABZR87_RS19415at 726.814 kb on + strand, within ABZR87_RS19415at 726.815 kb on - strand, within ABZR87_RS19415at 726.815 kb on - strand, within ABZR87_RS19415at 726.948 kb on + strandat 726.990 kb on - strandat 726.990 kb on - strandat 726.990 kb on - strandat 726.990 kb on - strandat 726.990 kb on - strandat 727.199 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.271 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.338 kb on - strandat 727.456 kb on + strandat 727.457 kb on - strandat 727.457 kb on - strandat 727.457 kb on - strandat 727.506 kb on + strandat 727.506 kb on + strandat 727.506 kb on + strandat 727.507 kb on - strandat 727.507 kb on - strandat 727.656 kb on + strand, within ABZR87_RS19425at 727.843 kb on + strand, within ABZR87_RS19425at 727.843 kb on + strand, within ABZR87_RS19425at 727.855 kb on + strand, within ABZR87_RS19425at 727.886 kb on - strand, within ABZR87_RS19425

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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725,135 + ABZR87_RS19410 0.52 -0.7
725,136 - ABZR87_RS19410 0.52 -0.5
725,179 + ABZR87_RS19410 0.56 +1.1
725,179 + ABZR87_RS19410 0.56 -0.8
725,179 + ABZR87_RS19410 0.56 +0.2
725,179 + ABZR87_RS19410 0.56 +1.3
725,179 + ABZR87_RS19410 0.56 -1.0
725,179 + ABZR87_RS19410 0.56 -1.9
725,179 + ABZR87_RS19410 0.56 -0.8
725,179 + ABZR87_RS19410 0.56 +1.5
725,179 + ABZR87_RS19410 0.56 -2.3
725,180 - ABZR87_RS19410 0.56 +0.2
725,180 - ABZR87_RS19410 0.56 -0.4
725,180 - ABZR87_RS19410 0.56 -1.0
725,180 - ABZR87_RS19410 0.56 -1.1
725,180 - ABZR87_RS19410 0.56 -0.8
725,180 - ABZR87_RS19410 0.56 -1.5
725,227 + ABZR87_RS19410 0.61 +0.3
725,329 + ABZR87_RS19410 0.70 -0.5
725,416 + ABZR87_RS19410 0.78 -1.0
725,417 - ABZR87_RS19410 0.78 -1.1
725,431 + ABZR87_RS19410 0.79 +0.1
725,432 - ABZR87_RS19410 0.79 +0.8
725,534 + ABZR87_RS19410 0.89 -0.2
725,570 - -1.3
725,695 + -0.8
725,720 + -2.1
725,721 - +0.1
725,721 - +0.1
725,734 + -0.0
725,734 + +1.2
725,734 + -1.0
725,742 + -0.6
725,742 + +0.5
725,743 - -1.5
725,743 - +1.9
725,757 + -1.2
725,761 + -0.8
725,762 - +1.1
725,783 - +0.2
725,786 + -0.4
725,787 - -0.2
725,787 - +0.4
725,787 - -0.7
725,797 + +1.2
725,797 + +0.8
725,797 + +1.2
725,798 - -0.5
725,798 - -3.0
725,798 - -0.5
725,810 - -0.2
725,810 - +0.4
725,986 - +0.5
726,191 - ABZR87_RS19415 0.20 +2.1
726,191 - ABZR87_RS19415 0.20 +1.6
726,191 - ABZR87_RS19415 0.20 +2.0
726,193 + ABZR87_RS19415 0.21 +1.3
726,193 + ABZR87_RS19415 0.21 -2.3
726,194 - ABZR87_RS19415 0.21 +1.3
726,194 - ABZR87_RS19415 0.21 -0.2
726,350 - ABZR87_RS19415 0.37 +1.9
726,350 - ABZR87_RS19415 0.37 -1.5
726,350 - ABZR87_RS19415 0.37 -0.2
726,509 - ABZR87_RS19415 0.54 +0.7
726,509 - ABZR87_RS19415 0.54 -0.0
726,571 + ABZR87_RS19415 0.61 +0.4
726,572 - ABZR87_RS19415 0.61 -1.4
726,736 + ABZR87_RS19415 0.78 -0.4
726,737 - ABZR87_RS19415 0.78 +0.5
726,737 - ABZR87_RS19415 0.78 -0.7
726,737 - ABZR87_RS19415 0.78 -1.8
726,781 + ABZR87_RS19415 0.83 -0.8
726,781 + ABZR87_RS19415 0.83 -0.1
726,781 + ABZR87_RS19415 0.83 +1.7
726,781 + ABZR87_RS19415 0.83 +0.5
726,781 + ABZR87_RS19415 0.83 -1.0
726,781 + ABZR87_RS19415 0.83 +0.7
726,782 - ABZR87_RS19415 0.83 -0.2
726,782 - ABZR87_RS19415 0.83 +0.3
726,782 - ABZR87_RS19415 0.83 -1.1
726,782 - ABZR87_RS19415 0.83 -0.1
726,782 - ABZR87_RS19415 0.83 +0.3
726,782 - ABZR87_RS19415 0.83 +0.4
726,783 + ABZR87_RS19415 0.83 +0.0
726,783 + ABZR87_RS19415 0.83 +0.3
726,783 + ABZR87_RS19415 0.83 -0.9
726,783 + ABZR87_RS19415 0.83 -0.1
726,783 + ABZR87_RS19415 0.83 +0.5
726,784 - ABZR87_RS19415 0.83 +0.7
726,784 - ABZR87_RS19415 0.83 +0.2
726,784 - ABZR87_RS19415 0.83 +0.8
726,814 + ABZR87_RS19415 0.86 -0.6
726,815 - ABZR87_RS19415 0.86 -0.9
726,815 - ABZR87_RS19415 0.86 +0.2
726,948 + -0.3
726,990 - -1.0
726,990 - -0.4
726,990 - +1.0
726,990 - -0.7
726,990 - -1.2
727,199 + ABZR87_RS19420 0.48 +0.5
727,232 + ABZR87_RS19420 0.58 +1.9
727,232 + ABZR87_RS19420 0.58 +0.5
727,232 + ABZR87_RS19420 0.58 +1.3
727,232 + ABZR87_RS19420 0.58 +0.8
727,233 - ABZR87_RS19420 0.58 -1.2
727,233 - ABZR87_RS19420 0.58 -1.9
727,233 - ABZR87_RS19420 0.58 -1.0
727,233 - ABZR87_RS19420 0.58 -1.7
727,233 - ABZR87_RS19420 0.58 -0.0
727,239 - ABZR87_RS19420 0.60 -1.4
727,239 - ABZR87_RS19420 0.60 +0.7
727,239 - ABZR87_RS19420 0.60 -0.1
727,239 - ABZR87_RS19420 0.60 +0.4
727,239 - ABZR87_RS19420 0.60 -0.3
727,271 + ABZR87_RS19420 0.70 +0.3
727,304 + ABZR87_RS19420 0.80 -1.5
727,304 + ABZR87_RS19420 0.80 +0.2
727,304 + ABZR87_RS19420 0.80 -1.7
727,304 + ABZR87_RS19420 0.80 +0.3
727,304 + ABZR87_RS19420 0.80 +0.4
727,304 + ABZR87_RS19420 0.80 +0.0
727,304 + ABZR87_RS19420 0.80 -0.1
727,304 + ABZR87_RS19420 0.80 +1.3
727,304 + ABZR87_RS19420 0.80 -0.6
727,304 + ABZR87_RS19420 0.80 -0.7
727,304 + ABZR87_RS19420 0.80 -0.8
727,304 + ABZR87_RS19420 0.80 +0.2
727,304 + ABZR87_RS19420 0.80 +0.5
727,305 - ABZR87_RS19420 0.80 -0.6
727,305 - ABZR87_RS19420 0.80 +0.8
727,305 - ABZR87_RS19420 0.80 -1.8
727,305 - ABZR87_RS19420 0.80 -1.6
727,305 - ABZR87_RS19420 0.80 +0.3
727,305 - ABZR87_RS19420 0.80 +0.9
727,305 - ABZR87_RS19420 0.80 +0.3
727,305 - ABZR87_RS19420 0.80 +0.4
727,305 - ABZR87_RS19420 0.80 -0.1
727,305 - ABZR87_RS19420 0.80 -1.0
727,305 - ABZR87_RS19420 0.80 -0.0
727,310 + ABZR87_RS19420 0.82 -2.0
727,310 + ABZR87_RS19420 0.82 +0.5
727,310 + ABZR87_RS19420 0.82 -0.4
727,310 + ABZR87_RS19420 0.82 -0.4
727,338 - -1.5
727,456 + +0.8
727,457 - -0.7
727,457 - -0.6
727,457 - +0.7
727,506 + +1.5
727,506 + +0.0
727,506 + -0.8
727,507 - -0.1
727,507 - +0.2
727,656 + ABZR87_RS19425 0.18 -1.9
727,843 + ABZR87_RS19425 0.42 -0.6
727,843 + ABZR87_RS19425 0.42 -0.4
727,855 + ABZR87_RS19425 0.43 -1.5
727,886 - ABZR87_RS19425 0.47 +0.1

Or see this region's nucleotide sequence