Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19340 and ABZR87_RS19345 are separated by 37 nucleotides ABZR87_RS19345 and ABZR87_RS19350 are separated by 211 nucleotides
ABZR87_RS19340: ABZR87_RS19340 - LysR family transcriptional regulator, at 704,969 to 705,913
_RS19340
ABZR87_RS19345: ABZR87_RS19345 - glutaminase, at 705,951 to 706,865
_RS19345
ABZR87_RS19350: ABZR87_RS19350 - putative hydro-lyase, at 707,077 to 707,904
_RS19350
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 704.954 kb on + strand at 704.955 kb on - strand at 704.955 kb on - strand at 704.955 kb on - strand at 704.976 kb on + strand at 704.977 kb on - strand at 705.167 kb on + strand, within ABZR87_RS19340 at 705.168 kb on - strand, within ABZR87_RS19340 at 705.869 kb on + strand at 705.926 kb on - strand at 706.123 kb on + strand, within ABZR87_RS19345 at 706.123 kb on + strand, within ABZR87_RS19345 at 706.303 kb on + strand, within ABZR87_RS19345 at 706.420 kb on + strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.817 kb on - strand at 706.858 kb on + strand at 706.858 kb on + strand at 706.943 kb on + strand at 707.135 kb on - strand at 707.135 kb on - strand at 707.147 kb on - strand at 707.212 kb on + strand, within ABZR87_RS19350 at 707.244 kb on + strand, within ABZR87_RS19350 at 707.245 kb on - strand, within ABZR87_RS19350 at 707.331 kb on - strand, within ABZR87_RS19350 at 707.389 kb on + strand, within ABZR87_RS19350 at 707.551 kb on + strand, within ABZR87_RS19350 at 707.551 kb on + strand, within ABZR87_RS19350 at 707.552 kb on - strand, within ABZR87_RS19350 at 707.552 kb on - strand, within ABZR87_RS19350 at 707.578 kb on - strand, within ABZR87_RS19350 at 707.578 kb on - strand, within ABZR87_RS19350 at 707.651 kb on - strand, within ABZR87_RS19350 at 707.728 kb on - strand, within ABZR87_RS19350
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 704,954 + +1.7 704,955 - +0.4 704,955 - -2.0 704,955 - +0.2 704,976 + -0.1 704,977 - -0.1 705,167 + ABZR87_RS19340 0.21 -1.9 705,168 - ABZR87_RS19340 0.21 -0.4 705,869 + -1.7 705,926 - -0.7 706,123 + ABZR87_RS19345 0.19 +0.7 706,123 + ABZR87_RS19345 0.19 +1.6 706,303 + ABZR87_RS19345 0.38 +0.2 706,420 + ABZR87_RS19345 0.51 +1.2 706,421 - ABZR87_RS19345 0.51 -0.9 706,421 - ABZR87_RS19345 0.51 -0.6 706,421 - ABZR87_RS19345 0.51 -0.4 706,789 + -1.8 706,789 + +1.0 706,789 + -1.2 706,789 + +1.4 706,789 + +0.2 706,790 - +0.3 706,790 - -0.3 706,790 - -0.4 706,790 - -1.7 706,790 - +8.6 706,790 - -1.9 706,790 - -0.6 706,817 - -1.6 706,858 + -0.2 706,858 + -0.6 706,943 + +0.2 707,135 - -0.9 707,135 - -1.1 707,147 - -2.1 707,212 + ABZR87_RS19350 0.16 -0.8 707,244 + ABZR87_RS19350 0.20 -0.5 707,245 - ABZR87_RS19350 0.20 +1.4 707,331 - ABZR87_RS19350 0.31 +0.3 707,389 + ABZR87_RS19350 0.38 +0.2 707,551 + ABZR87_RS19350 0.57 +0.9 707,551 + ABZR87_RS19350 0.57 +1.9 707,552 - ABZR87_RS19350 0.57 +0.4 707,552 - ABZR87_RS19350 0.57 +0.5 707,578 - ABZR87_RS19350 0.61 +0.0 707,578 - ABZR87_RS19350 0.61 -1.0 707,651 - ABZR87_RS19350 0.69 +0.1 707,728 - ABZR87_RS19350 0.79 -1.2
Or see this region's nucleotide sequence