Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19330 and ABZR87_RS19335 are separated by 84 nucleotides ABZR87_RS19335 and ABZR87_RS19340 are separated by 310 nucleotides
ABZR87_RS19330: ABZR87_RS19330 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 695,776 to 696,843
_RS19330
ABZR87_RS19335: ABZR87_RS19335 - glutamate cyclase domain-containing protein, at 696,928 to 704,658
_RS19335
ABZR87_RS19340: ABZR87_RS19340 - LysR family transcriptional regulator, at 704,969 to 705,913
_RS19340
Position (kb) 696
697
698
699
700
701
702
703
704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 695.945 kb on + strand, within ABZR87_RS19330 at 695.945 kb on + strand, within ABZR87_RS19330 at 696.008 kb on + strand, within ABZR87_RS19330 at 696.040 kb on - strand, within ABZR87_RS19330 at 696.361 kb on + strand, within ABZR87_RS19330 at 696.361 kb on + strand, within ABZR87_RS19330 at 696.362 kb on - strand, within ABZR87_RS19330 at 696.386 kb on - strand, within ABZR87_RS19330 at 696.386 kb on - strand, within ABZR87_RS19330 at 696.517 kb on + strand, within ABZR87_RS19330 at 696.517 kb on + strand, within ABZR87_RS19330 at 696.518 kb on - strand, within ABZR87_RS19330 at 696.589 kb on + strand, within ABZR87_RS19330 at 696.590 kb on - strand, within ABZR87_RS19330 at 696.590 kb on - strand, within ABZR87_RS19330 at 696.742 kb on - strand at 696.824 kb on - strand at 697.053 kb on + strand at 697.163 kb on + strand at 697.519 kb on + strand at 697.536 kb on + strand at 697.536 kb on + strand at 697.536 kb on + strand at 697.536 kb on + strand at 697.537 kb on - strand at 697.581 kb on + strand at 697.581 kb on + strand at 697.581 kb on + strand at 697.582 kb on - strand at 697.582 kb on - strand at 697.582 kb on - strand at 697.583 kb on + strand at 697.584 kb on - strand at 697.584 kb on - strand at 697.584 kb on - strand at 697.585 kb on + strand at 697.585 kb on + strand at 697.585 kb on + strand at 697.585 kb on + strand at 697.586 kb on - strand at 697.804 kb on + strand, within ABZR87_RS19335 at 698.153 kb on + strand, within ABZR87_RS19335 at 698.154 kb on - strand, within ABZR87_RS19335 at 698.547 kb on - strand, within ABZR87_RS19335 at 698.741 kb on + strand, within ABZR87_RS19335 at 698.742 kb on - strand, within ABZR87_RS19335 at 698.742 kb on - strand, within ABZR87_RS19335 at 698.954 kb on + strand, within ABZR87_RS19335 at 698.955 kb on - strand, within ABZR87_RS19335 at 698.955 kb on - strand, within ABZR87_RS19335 at 699.084 kb on - strand, within ABZR87_RS19335 at 699.155 kb on + strand, within ABZR87_RS19335 at 699.155 kb on + strand, within ABZR87_RS19335 at 699.155 kb on + strand, within ABZR87_RS19335 at 699.156 kb on - strand, within ABZR87_RS19335 at 699.156 kb on - strand, within ABZR87_RS19335 at 699.156 kb on - strand, within ABZR87_RS19335 at 699.524 kb on + strand, within ABZR87_RS19335 at 699.525 kb on - strand, within ABZR87_RS19335 at 699.525 kb on - strand, within ABZR87_RS19335 at 699.539 kb on + strand, within ABZR87_RS19335 at 699.539 kb on + strand, within ABZR87_RS19335 at 699.539 kb on + strand, within ABZR87_RS19335 at 699.603 kb on - strand, within ABZR87_RS19335 at 699.627 kb on + strand, within ABZR87_RS19335 at 699.735 kb on - strand, within ABZR87_RS19335 at 699.735 kb on - strand, within ABZR87_RS19335 at 700.902 kb on + strand, within ABZR87_RS19335 at 700.961 kb on + strand, within ABZR87_RS19335 at 701.059 kb on - strand, within ABZR87_RS19335 at 701.136 kb on + strand, within ABZR87_RS19335 at 701.137 kb on - strand, within ABZR87_RS19335 at 701.137 kb on - strand, within ABZR87_RS19335 at 701.213 kb on - strand, within ABZR87_RS19335 at 701.231 kb on + strand, within ABZR87_RS19335 at 701.231 kb on + strand, within ABZR87_RS19335 at 701.417 kb on + strand, within ABZR87_RS19335 at 701.417 kb on + strand, within ABZR87_RS19335 at 701.631 kb on + strand, within ABZR87_RS19335 at 701.870 kb on + strand, within ABZR87_RS19335 at 702.032 kb on + strand, within ABZR87_RS19335 at 702.032 kb on + strand, within ABZR87_RS19335 at 702.033 kb on - strand, within ABZR87_RS19335 at 702.179 kb on + strand, within ABZR87_RS19335 at 702.180 kb on - strand, within ABZR87_RS19335 at 702.270 kb on + strand, within ABZR87_RS19335 at 702.271 kb on - strand, within ABZR87_RS19335 at 702.271 kb on - strand, within ABZR87_RS19335 at 702.271 kb on - strand, within ABZR87_RS19335 at 702.521 kb on - strand, within ABZR87_RS19335 at 702.524 kb on + strand, within ABZR87_RS19335 at 702.524 kb on + strand, within ABZR87_RS19335 at 702.525 kb on - strand, within ABZR87_RS19335 at 702.525 kb on - strand, within ABZR87_RS19335 at 702.525 kb on - strand, within ABZR87_RS19335 at 702.525 kb on - strand, within ABZR87_RS19335 at 702.525 kb on - strand, within ABZR87_RS19335 at 702.582 kb on - strand, within ABZR87_RS19335 at 702.605 kb on + strand, within ABZR87_RS19335 at 702.605 kb on + strand, within ABZR87_RS19335 at 702.678 kb on - strand, within ABZR87_RS19335 at 702.776 kb on + strand, within ABZR87_RS19335 at 702.776 kb on + strand, within ABZR87_RS19335 at 702.776 kb on + strand, within ABZR87_RS19335 at 702.776 kb on + strand, within ABZR87_RS19335 at 702.776 kb on + strand, within ABZR87_RS19335 at 702.776 kb on + strand, within ABZR87_RS19335 at 702.777 kb on - strand, within ABZR87_RS19335 at 702.851 kb on + strand, within ABZR87_RS19335 at 702.852 kb on - strand, within ABZR87_RS19335 at 702.852 kb on - strand, within ABZR87_RS19335 at 702.908 kb on + strand, within ABZR87_RS19335 at 702.909 kb on - strand, within ABZR87_RS19335 at 702.998 kb on + strand, within ABZR87_RS19335 at 702.998 kb on + strand, within ABZR87_RS19335 at 702.998 kb on + strand, within ABZR87_RS19335 at 702.999 kb on - strand, within ABZR87_RS19335 at 702.999 kb on - strand, within ABZR87_RS19335 at 703.362 kb on + strand, within ABZR87_RS19335 at 703.493 kb on + strand, within ABZR87_RS19335 at 703.589 kb on + strand, within ABZR87_RS19335 at 703.589 kb on + strand, within ABZR87_RS19335 at 703.589 kb on + strand, within ABZR87_RS19335 at 703.590 kb on - strand, within ABZR87_RS19335 at 703.631 kb on + strand, within ABZR87_RS19335 at 703.631 kb on + strand, within ABZR87_RS19335 at 703.632 kb on - strand, within ABZR87_RS19335 at 703.757 kb on + strand, within ABZR87_RS19335 at 703.758 kb on - strand, within ABZR87_RS19335 at 703.775 kb on + strand, within ABZR87_RS19335 at 703.775 kb on + strand, within ABZR87_RS19335 at 703.799 kb on + strand, within ABZR87_RS19335 at 703.800 kb on - strand, within ABZR87_RS19335 at 704.072 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.501 kb on + strand at 704.502 kb on - strand at 704.502 kb on - strand at 704.502 kb on - strand at 704.618 kb on + strand at 704.619 kb on - strand at 704.760 kb on + strand at 704.760 kb on + strand at 704.760 kb on + strand at 704.760 kb on + strand at 704.761 kb on - strand at 704.761 kb on - strand at 704.764 kb on + strand at 704.765 kb on - strand at 704.765 kb on - strand at 704.797 kb on + strand at 704.804 kb on + strand at 704.804 kb on + strand at 704.805 kb on - strand at 704.805 kb on - strand at 704.805 kb on - strand at 704.807 kb on + strand at 704.839 kb on + strand at 704.947 kb on - strand at 704.954 kb on + strand at 704.955 kb on - strand at 704.955 kb on - strand at 704.955 kb on - strand at 704.976 kb on + strand at 704.977 kb on - strand at 705.167 kb on + strand, within ABZR87_RS19340 at 705.168 kb on - strand, within ABZR87_RS19340
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 695,945 + ABZR87_RS19330 0.16 +0.3 695,945 + ABZR87_RS19330 0.16 -2.9 696,008 + ABZR87_RS19330 0.22 -0.8 696,040 - ABZR87_RS19330 0.25 +2.1 696,361 + ABZR87_RS19330 0.55 +2.2 696,361 + ABZR87_RS19330 0.55 +0.9 696,362 - ABZR87_RS19330 0.55 -0.5 696,386 - ABZR87_RS19330 0.57 +0.1 696,386 - ABZR87_RS19330 0.57 +0.8 696,517 + ABZR87_RS19330 0.69 -1.0 696,517 + ABZR87_RS19330 0.69 +0.3 696,518 - ABZR87_RS19330 0.69 +0.8 696,589 + ABZR87_RS19330 0.76 -0.8 696,590 - ABZR87_RS19330 0.76 +0.7 696,590 - ABZR87_RS19330 0.76 +2.9 696,742 - +1.1 696,824 - +0.2 697,053 + +0.2 697,163 + +0.1 697,519 + -2.0 697,536 + +0.8 697,536 + +1.2 697,536 + +0.8 697,536 + +0.5 697,537 - +0.3 697,581 + +0.3 697,581 + +1.5 697,581 + -0.6 697,582 - +0.0 697,582 - -1.2 697,582 - -1.8 697,583 + +0.7 697,584 - -0.2 697,584 - +0.8 697,584 - +0.1 697,585 + -0.6 697,585 + +1.0 697,585 + +0.7 697,585 + -0.1 697,586 - -1.6 697,804 + ABZR87_RS19335 0.11 +0.3 698,153 + ABZR87_RS19335 0.16 -0.1 698,154 - ABZR87_RS19335 0.16 +0.4 698,547 - ABZR87_RS19335 0.21 -1.4 698,741 + ABZR87_RS19335 0.23 +0.0 698,742 - ABZR87_RS19335 0.23 +0.0 698,742 - ABZR87_RS19335 0.23 -0.7 698,954 + ABZR87_RS19335 0.26 +0.9 698,955 - ABZR87_RS19335 0.26 -0.3 698,955 - ABZR87_RS19335 0.26 +1.8 699,084 - ABZR87_RS19335 0.28 +0.7 699,155 + ABZR87_RS19335 0.29 -1.5 699,155 + ABZR87_RS19335 0.29 -0.8 699,155 + ABZR87_RS19335 0.29 +0.4 699,156 - ABZR87_RS19335 0.29 -1.1 699,156 - ABZR87_RS19335 0.29 +1.3 699,156 - ABZR87_RS19335 0.29 +0.5 699,524 + ABZR87_RS19335 0.34 -0.5 699,525 - ABZR87_RS19335 0.34 +0.8 699,525 - ABZR87_RS19335 0.34 +0.3 699,539 + ABZR87_RS19335 0.34 -0.3 699,539 + ABZR87_RS19335 0.34 +1.0 699,539 + ABZR87_RS19335 0.34 -0.0 699,603 - ABZR87_RS19335 0.35 -0.3 699,627 + ABZR87_RS19335 0.35 +0.3 699,735 - ABZR87_RS19335 0.36 -0.4 699,735 - ABZR87_RS19335 0.36 +0.5 700,902 + ABZR87_RS19335 0.51 +0.3 700,961 + ABZR87_RS19335 0.52 +0.1 701,059 - ABZR87_RS19335 0.53 +0.1 701,136 + ABZR87_RS19335 0.54 -0.1 701,137 - ABZR87_RS19335 0.54 +0.5 701,137 - ABZR87_RS19335 0.54 -0.7 701,213 - ABZR87_RS19335 0.55 +3.5 701,231 + ABZR87_RS19335 0.56 -0.5 701,231 + ABZR87_RS19335 0.56 -0.3 701,417 + ABZR87_RS19335 0.58 +0.7 701,417 + ABZR87_RS19335 0.58 +0.3 701,631 + ABZR87_RS19335 0.61 -1.8 701,870 + ABZR87_RS19335 0.64 +1.5 702,032 + ABZR87_RS19335 0.66 -1.6 702,032 + ABZR87_RS19335 0.66 -1.7 702,033 - ABZR87_RS19335 0.66 -0.5 702,179 + ABZR87_RS19335 0.68 +0.4 702,180 - ABZR87_RS19335 0.68 +0.9 702,270 + ABZR87_RS19335 0.69 -0.3 702,271 - ABZR87_RS19335 0.69 +2.7 702,271 - ABZR87_RS19335 0.69 -0.7 702,271 - ABZR87_RS19335 0.69 -1.0 702,521 - ABZR87_RS19335 0.72 +0.1 702,524 + ABZR87_RS19335 0.72 +1.0 702,524 + ABZR87_RS19335 0.72 -0.7 702,525 - ABZR87_RS19335 0.72 +0.3 702,525 - ABZR87_RS19335 0.72 +0.5 702,525 - ABZR87_RS19335 0.72 +1.2 702,525 - ABZR87_RS19335 0.72 +0.6 702,525 - ABZR87_RS19335 0.72 -1.3 702,582 - ABZR87_RS19335 0.73 -2.4 702,605 + ABZR87_RS19335 0.73 +0.0 702,605 + ABZR87_RS19335 0.73 -1.2 702,678 - ABZR87_RS19335 0.74 -0.4 702,776 + ABZR87_RS19335 0.76 +0.4 702,776 + ABZR87_RS19335 0.76 +0.7 702,776 + ABZR87_RS19335 0.76 -0.2 702,776 + ABZR87_RS19335 0.76 -1.6 702,776 + ABZR87_RS19335 0.76 +0.1 702,776 + ABZR87_RS19335 0.76 +0.9 702,777 - ABZR87_RS19335 0.76 +2.4 702,851 + ABZR87_RS19335 0.77 +1.1 702,852 - ABZR87_RS19335 0.77 -0.0 702,852 - ABZR87_RS19335 0.77 +0.8 702,908 + ABZR87_RS19335 0.77 -1.7 702,909 - ABZR87_RS19335 0.77 +0.7 702,998 + ABZR87_RS19335 0.79 -0.3 702,998 + ABZR87_RS19335 0.79 -0.2 702,998 + ABZR87_RS19335 0.79 +0.4 702,999 - ABZR87_RS19335 0.79 +0.2 702,999 - ABZR87_RS19335 0.79 -0.2 703,362 + ABZR87_RS19335 0.83 -0.5 703,493 + ABZR87_RS19335 0.85 +0.2 703,589 + ABZR87_RS19335 0.86 -1.3 703,589 + ABZR87_RS19335 0.86 +1.4 703,589 + ABZR87_RS19335 0.86 -0.5 703,590 - ABZR87_RS19335 0.86 -0.2 703,631 + ABZR87_RS19335 0.87 -0.9 703,631 + ABZR87_RS19335 0.87 +0.4 703,632 - ABZR87_RS19335 0.87 -1.7 703,757 + ABZR87_RS19335 0.88 +0.3 703,758 - ABZR87_RS19335 0.88 -0.2 703,775 + ABZR87_RS19335 0.89 -1.0 703,775 + ABZR87_RS19335 0.89 -0.4 703,799 + ABZR87_RS19335 0.89 -1.8 703,800 - ABZR87_RS19335 0.89 +0.1 704,072 + -1.0 704,501 + -0.5 704,501 + -0.8 704,501 + +0.9 704,501 + +0.5 704,501 + +0.3 704,501 + +0.6 704,502 - +0.9 704,502 - -2.6 704,502 - -0.7 704,618 + -0.1 704,619 - -0.5 704,760 + -0.9 704,760 + -0.9 704,760 + -0.5 704,760 + -0.9 704,761 - +1.0 704,761 - +1.2 704,764 + -0.5 704,765 - -0.6 704,765 - +0.6 704,797 + -1.1 704,804 + +0.0 704,804 + +1.0 704,805 - -0.5 704,805 - -1.2 704,805 - -0.2 704,807 + +0.5 704,839 + -1.1 704,947 - +0.1 704,954 + +1.7 704,955 - +0.4 704,955 - -2.0 704,955 - +0.2 704,976 + -0.1 704,977 - -0.1 705,167 + ABZR87_RS19340 0.21 -1.9 705,168 - ABZR87_RS19340 0.21 -0.4
Or see this region's nucleotide sequence