Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19315 and ABZR87_RS19320 overlap by 4 nucleotides ABZR87_RS19320 and ABZR87_RS19325 are separated by 4 nucleotides ABZR87_RS19325 and ABZR87_RS19330 overlap by 4 nucleotides
ABZR87_RS19315: ABZR87_RS19315 - FliI/YscN family ATPase, at 693,125 to 694,483
_RS19315
ABZR87_RS19320: ABZR87_RS19320 - hypothetical protein, at 694,480 to 694,974
_RS19320
ABZR87_RS19325: ABZR87_RS19325 - type III secretion system export apparatus subunit SctT, at 694,979 to 695,779
_RS19325
ABZR87_RS19330: ABZR87_RS19330 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 695,776 to 696,843
_RS19330
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 694.088 kb on + strand, within ABZR87_RS19315 at 694.088 kb on + strand, within ABZR87_RS19315 at 694.225 kb on + strand, within ABZR87_RS19315 at 694.226 kb on - strand, within ABZR87_RS19315 at 694.304 kb on + strand, within ABZR87_RS19315 at 694.697 kb on + strand, within ABZR87_RS19320 at 695.062 kb on + strand, within ABZR87_RS19325 at 695.063 kb on - strand, within ABZR87_RS19325 at 695.441 kb on + strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.945 kb on + strand, within ABZR87_RS19330 at 695.945 kb on + strand, within ABZR87_RS19330 at 696.008 kb on + strand, within ABZR87_RS19330 at 696.040 kb on - strand, within ABZR87_RS19330 at 696.361 kb on + strand, within ABZR87_RS19330 at 696.361 kb on + strand, within ABZR87_RS19330 at 696.362 kb on - strand, within ABZR87_RS19330 at 696.386 kb on - strand, within ABZR87_RS19330 at 696.386 kb on - strand, within ABZR87_RS19330 at 696.517 kb on + strand, within ABZR87_RS19330 at 696.517 kb on + strand, within ABZR87_RS19330 at 696.518 kb on - strand, within ABZR87_RS19330 at 696.589 kb on + strand, within ABZR87_RS19330 at 696.590 kb on - strand, within ABZR87_RS19330 at 696.590 kb on - strand, within ABZR87_RS19330 at 696.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 694,088 + ABZR87_RS19315 0.71 -0.2 694,088 + ABZR87_RS19315 0.71 -0.0 694,225 + ABZR87_RS19315 0.81 -0.6 694,226 - ABZR87_RS19315 0.81 -0.1 694,304 + ABZR87_RS19315 0.87 -0.1 694,697 + ABZR87_RS19320 0.44 -0.1 695,062 + ABZR87_RS19325 0.10 -0.7 695,063 - ABZR87_RS19325 0.10 +1.0 695,441 + ABZR87_RS19325 0.58 -0.1 695,442 - ABZR87_RS19325 0.58 -0.0 695,442 - ABZR87_RS19325 0.58 +1.7 695,442 - ABZR87_RS19325 0.58 -0.3 695,945 + ABZR87_RS19330 0.16 +0.3 695,945 + ABZR87_RS19330 0.16 -2.9 696,008 + ABZR87_RS19330 0.22 -0.8 696,040 - ABZR87_RS19330 0.25 +2.1 696,361 + ABZR87_RS19330 0.55 +2.2 696,361 + ABZR87_RS19330 0.55 +0.9 696,362 - ABZR87_RS19330 0.55 -0.5 696,386 - ABZR87_RS19330 0.57 +0.1 696,386 - ABZR87_RS19330 0.57 +0.8 696,517 + ABZR87_RS19330 0.69 -1.0 696,517 + ABZR87_RS19330 0.69 +0.3 696,518 - ABZR87_RS19330 0.69 +0.8 696,589 + ABZR87_RS19330 0.76 -0.8 696,590 - ABZR87_RS19330 0.76 +0.7 696,590 - ABZR87_RS19330 0.76 +2.9 696,742 - +1.1
Or see this region's nucleotide sequence