Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18760 and ABZR87_RS18765 are separated by 134 nucleotides ABZR87_RS18765 and ABZR87_RS18770 are separated by 94 nucleotides
ABZR87_RS18760: ABZR87_RS18760 - hypothetical protein, at 561,724 to 562,782
_RS18760
ABZR87_RS18765: ABZR87_RS18765 - S53 family peptidase, at 562,917 to 564,281
_RS18765
ABZR87_RS18770: ABZR87_RS18770 - S10 family peptidase, at 564,376 to 566,109
_RS18770
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.922 kb on + strand, within ABZR87_RS18760 at 561.922 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.037 kb on - strand, within ABZR87_RS18760 at 562.105 kb on + strand, within ABZR87_RS18760 at 562.137 kb on + strand, within ABZR87_RS18760 at 562.137 kb on + strand, within ABZR87_RS18760 at 562.138 kb on - strand, within ABZR87_RS18760 at 562.185 kb on + strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.213 kb on + strand, within ABZR87_RS18760 at 562.213 kb on + strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.355 kb on - strand, within ABZR87_RS18760 at 562.355 kb on - strand, within ABZR87_RS18760 at 562.438 kb on + strand, within ABZR87_RS18760 at 562.439 kb on - strand, within ABZR87_RS18760 at 562.535 kb on - strand, within ABZR87_RS18760 at 562.547 kb on - strand, within ABZR87_RS18760 at 562.547 kb on - strand, within ABZR87_RS18760 at 562.609 kb on + strand, within ABZR87_RS18760 at 562.610 kb on - strand, within ABZR87_RS18760 at 562.636 kb on + strand, within ABZR87_RS18760 at 562.637 kb on - strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.678 kb on + strand at 562.678 kb on + strand at 562.678 kb on + strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.792 kb on + strand at 562.792 kb on + strand at 562.793 kb on - strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 563.270 kb on + strand, within ABZR87_RS18765 at 563.308 kb on - strand, within ABZR87_RS18765 at 563.484 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.512 kb on - strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.772 kb on - strand, within ABZR87_RS18765 at 564.145 kb on + strand at 564.226 kb on + strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.387 kb on + strand at 564.387 kb on + strand at 564.387 kb on + strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.513 kb on + strand at 564.514 kb on - strand at 564.514 kb on - strand at 564.661 kb on + strand, within ABZR87_RS18770 at 564.662 kb on - strand, within ABZR87_RS18770 at 564.793 kb on + strand, within ABZR87_RS18770 at 564.793 kb on + strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.795 kb on + strand, within ABZR87_RS18770 at 564.970 kb on + strand, within ABZR87_RS18770 at 564.970 kb on + strand, within ABZR87_RS18770 at 565.111 kb on + strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.204 kb on + strand, within ABZR87_RS18770
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 561,919 + ABZR87_RS18760 0.18 -2.5 561,919 + ABZR87_RS18760 0.18 +0.0 561,919 + ABZR87_RS18760 0.18 -0.7 561,922 + ABZR87_RS18760 0.19 -0.2 561,922 + ABZR87_RS18760 0.19 +1.6 562,036 + ABZR87_RS18760 0.29 -0.6 562,036 + ABZR87_RS18760 0.29 +0.2 562,036 + ABZR87_RS18760 0.29 +2.8 562,037 - ABZR87_RS18760 0.30 -0.9 562,105 + ABZR87_RS18760 0.36 +0.1 562,137 + ABZR87_RS18760 0.39 -0.1 562,137 + ABZR87_RS18760 0.39 +1.4 562,138 - ABZR87_RS18760 0.39 -0.0 562,185 + ABZR87_RS18760 0.44 +0.6 562,186 - ABZR87_RS18760 0.44 +0.0 562,186 - ABZR87_RS18760 0.44 -0.1 562,186 - ABZR87_RS18760 0.44 +1.2 562,213 + ABZR87_RS18760 0.46 -0.3 562,213 + ABZR87_RS18760 0.46 -1.1 562,214 - ABZR87_RS18760 0.46 -0.5 562,214 - ABZR87_RS18760 0.46 +0.0 562,214 - ABZR87_RS18760 0.46 +1.4 562,355 - ABZR87_RS18760 0.60 -1.0 562,355 - ABZR87_RS18760 0.60 -0.5 562,438 + ABZR87_RS18760 0.67 -0.5 562,439 - ABZR87_RS18760 0.68 -0.8 562,535 - ABZR87_RS18760 0.77 -0.6 562,547 - ABZR87_RS18760 0.78 -0.9 562,547 - ABZR87_RS18760 0.78 -0.9 562,609 + ABZR87_RS18760 0.84 +0.4 562,610 - ABZR87_RS18760 0.84 -0.8 562,636 + ABZR87_RS18760 0.86 -2.1 562,637 - ABZR87_RS18760 0.86 -0.5 562,639 + ABZR87_RS18760 0.86 -1.0 562,639 + ABZR87_RS18760 0.86 -0.8 562,639 + ABZR87_RS18760 0.86 -0.0 562,640 - ABZR87_RS18760 0.86 +0.9 562,640 - ABZR87_RS18760 0.86 +1.6 562,640 - ABZR87_RS18760 0.86 +1.2 562,640 - ABZR87_RS18760 0.86 +0.0 562,640 - ABZR87_RS18760 0.86 -1.6 562,640 - ABZR87_RS18760 0.86 -0.1 562,653 - ABZR87_RS18760 0.88 -0.1 562,653 - ABZR87_RS18760 0.88 -0.2 562,653 - ABZR87_RS18760 0.88 -0.6 562,678 + -0.2 562,678 + +1.2 562,678 + +1.7 562,679 - -1.2 562,679 - +0.9 562,679 - -0.0 562,679 - +0.4 562,679 - +0.8 562,679 - +0.9 562,679 - +1.6 562,792 + +0.5 562,792 + -2.7 562,793 - -2.2 562,897 + -0.1 562,897 + -0.9 562,897 + -0.5 562,897 + +0.5 562,897 + +0.8 562,897 + -2.1 562,897 + +0.5 562,898 - -0.1 562,898 - +1.8 562,898 - -0.5 562,898 - +0.3 562,901 + -0.9 562,901 + +0.3 562,901 + -0.6 562,901 + -0.0 562,901 + -1.5 562,901 + -1.8 562,901 + +0.5 562,901 + +0.9 562,901 + -0.5 562,901 + +0.6 562,901 + -1.3 562,901 + -1.0 562,901 + +0.9 562,901 + +0.4 562,902 - -1.1 562,902 - +1.0 562,902 - +0.2 562,902 - +0.2 562,902 - -0.5 562,902 - +0.8 562,902 - -0.3 562,902 - -0.8 562,902 - -1.2 562,902 - +0.7 563,270 + ABZR87_RS18765 0.26 +1.1 563,308 - ABZR87_RS18765 0.29 -1.3 563,484 + ABZR87_RS18765 0.42 +0.5 563,511 + ABZR87_RS18765 0.44 +0.0 563,511 + ABZR87_RS18765 0.44 +0.3 563,512 - ABZR87_RS18765 0.44 +0.5 563,598 + ABZR87_RS18765 0.50 -0.7 563,598 + ABZR87_RS18765 0.50 +0.1 563,598 + ABZR87_RS18765 0.50 -0.3 563,599 - ABZR87_RS18765 0.50 +1.7 563,599 - ABZR87_RS18765 0.50 +1.3 563,757 + ABZR87_RS18765 0.62 +0.8 563,757 + ABZR87_RS18765 0.62 +0.4 563,757 + ABZR87_RS18765 0.62 -0.4 563,758 - ABZR87_RS18765 0.62 -0.2 563,758 - ABZR87_RS18765 0.62 -1.6 563,772 - ABZR87_RS18765 0.63 +0.3 564,145 + +1.1 564,226 + +0.2 564,227 - +2.6 564,227 - -0.4 564,387 + -1.1 564,387 + -2.1 564,387 + -0.2 564,388 - +1.6 564,388 - -0.9 564,388 - +0.4 564,388 - -0.2 564,388 - -0.9 564,388 - +0.1 564,513 + +2.3 564,514 - -0.3 564,514 - +0.6 564,661 + ABZR87_RS18770 0.16 +0.8 564,662 - ABZR87_RS18770 0.16 -0.0 564,793 + ABZR87_RS18770 0.24 -0.8 564,793 + ABZR87_RS18770 0.24 -0.1 564,794 - ABZR87_RS18770 0.24 -1.0 564,794 - ABZR87_RS18770 0.24 -1.7 564,794 - ABZR87_RS18770 0.24 +0.9 564,794 - ABZR87_RS18770 0.24 +0.3 564,795 + ABZR87_RS18770 0.24 +1.2 564,970 + ABZR87_RS18770 0.34 +1.3 564,970 + ABZR87_RS18770 0.34 -0.7 565,111 + ABZR87_RS18770 0.42 -0.2 565,112 - ABZR87_RS18770 0.42 +2.1 565,112 - ABZR87_RS18770 0.42 -0.7 565,112 - ABZR87_RS18770 0.42 -1.2 565,141 + ABZR87_RS18770 0.44 -0.3 565,141 + ABZR87_RS18770 0.44 +0.3 565,141 + ABZR87_RS18770 0.44 +1.1 565,141 + ABZR87_RS18770 0.44 -0.1 565,141 + ABZR87_RS18770 0.44 -0.1 565,142 - ABZR87_RS18770 0.44 -1.1 565,142 - ABZR87_RS18770 0.44 +1.9 565,142 - ABZR87_RS18770 0.44 +0.1 565,142 - ABZR87_RS18770 0.44 +1.0 565,142 - ABZR87_RS18770 0.44 +0.3 565,204 + ABZR87_RS18770 0.48 +2.0
Or see this region's nucleotide sequence