Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18690 and ABZR87_RS18695 are separated by 336 nucleotides ABZR87_RS18695 and ABZR87_RS18700 are separated by 21 nucleotides ABZR87_RS18700 and ABZR87_RS18705 are separated by 24 nucleotides
ABZR87_RS18690: ABZR87_RS18690 - sugar ABC transporter substrate-binding protein, at 545,644 to 546,849
_RS18690
ABZR87_RS18695: ABZR87_RS18695 - sugar-binding transcriptional regulator, at 547,186 to 548,139
_RS18695
ABZR87_RS18700: ABZR87_RS18700 - DUF1272 domain-containing protein, at 548,161 to 548,469
_RS18700
ABZR87_RS18705: ABZR87_RS18705 - TraB/GumN family protein, at 548,494 to 549,522
_RS18705
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 546.257 kb on + strand, within ABZR87_RS18690 at 546.257 kb on + strand, within ABZR87_RS18690 at 546.258 kb on - strand, within ABZR87_RS18690 at 546.278 kb on + strand, within ABZR87_RS18690 at 546.278 kb on + strand, within ABZR87_RS18690 at 546.278 kb on + strand, within ABZR87_RS18690 at 546.278 kb on + strand, within ABZR87_RS18690 at 546.278 kb on + strand, within ABZR87_RS18690 at 546.278 kb on + strand, within ABZR87_RS18690 at 546.278 kb on + strand, within ABZR87_RS18690 at 546.279 kb on - strand, within ABZR87_RS18690 at 546.279 kb on - strand, within ABZR87_RS18690 at 546.279 kb on - strand, within ABZR87_RS18690 at 546.279 kb on - strand, within ABZR87_RS18690 at 546.279 kb on - strand, within ABZR87_RS18690 at 546.425 kb on + strand, within ABZR87_RS18690 at 546.426 kb on - strand, within ABZR87_RS18690 at 546.479 kb on + strand, within ABZR87_RS18690 at 546.479 kb on + strand, within ABZR87_RS18690 at 546.480 kb on - strand, within ABZR87_RS18690 at 546.480 kb on - strand, within ABZR87_RS18690 at 546.480 kb on - strand, within ABZR87_RS18690 at 546.480 kb on - strand, within ABZR87_RS18690 at 546.480 kb on - strand, within ABZR87_RS18690 at 546.536 kb on + strand, within ABZR87_RS18690 at 546.536 kb on + strand, within ABZR87_RS18690 at 546.536 kb on + strand, within ABZR87_RS18690 at 546.536 kb on + strand, within ABZR87_RS18690 at 546.536 kb on + strand, within ABZR87_RS18690 at 546.537 kb on - strand, within ABZR87_RS18690 at 546.537 kb on - strand, within ABZR87_RS18690 at 546.537 kb on - strand, within ABZR87_RS18690 at 546.537 kb on - strand, within ABZR87_RS18690 at 546.537 kb on - strand, within ABZR87_RS18690 at 546.537 kb on - strand, within ABZR87_RS18690 at 546.537 kb on - strand, within ABZR87_RS18690 at 546.557 kb on + strand, within ABZR87_RS18690 at 546.557 kb on + strand, within ABZR87_RS18690 at 546.558 kb on - strand, within ABZR87_RS18690 at 546.558 kb on - strand, within ABZR87_RS18690 at 546.558 kb on - strand, within ABZR87_RS18690 at 546.632 kb on + strand, within ABZR87_RS18690 at 546.632 kb on + strand, within ABZR87_RS18690 at 546.633 kb on - strand, within ABZR87_RS18690 at 546.633 kb on - strand, within ABZR87_RS18690 at 546.693 kb on - strand, within ABZR87_RS18690 at 546.693 kb on - strand, within ABZR87_RS18690 at 547.157 kb on + strand at 547.158 kb on - strand at 547.158 kb on - strand at 547.158 kb on - strand at 547.168 kb on + strand at 547.168 kb on + strand at 547.168 kb on + strand at 547.169 kb on - strand at 547.169 kb on - strand at 547.169 kb on - strand at 547.169 kb on - strand at 547.171 kb on + strand at 547.171 kb on + strand at 547.171 kb on + strand at 547.171 kb on + strand at 547.171 kb on + strand at 547.172 kb on - strand at 547.172 kb on - strand at 547.172 kb on - strand at 547.237 kb on + strand at 547.237 kb on + strand at 547.237 kb on + strand at 547.237 kb on + strand at 547.237 kb on + strand at 547.238 kb on - strand at 547.238 kb on - strand at 547.238 kb on - strand at 547.240 kb on + strand at 547.240 kb on + strand at 547.240 kb on + strand at 547.240 kb on + strand at 547.241 kb on - strand at 547.241 kb on - strand at 547.241 kb on - strand at 547.241 kb on - strand at 547.318 kb on + strand, within ABZR87_RS18695 at 547.318 kb on + strand, within ABZR87_RS18695 at 547.319 kb on - strand, within ABZR87_RS18695 at 547.654 kb on + strand, within ABZR87_RS18695 at 547.697 kb on - strand, within ABZR87_RS18695 at 547.699 kb on + strand, within ABZR87_RS18695 at 547.699 kb on + strand, within ABZR87_RS18695 at 547.699 kb on + strand, within ABZR87_RS18695 at 547.699 kb on + strand, within ABZR87_RS18695 at 547.700 kb on - strand, within ABZR87_RS18695 at 547.700 kb on - strand, within ABZR87_RS18695 at 547.700 kb on - strand, within ABZR87_RS18695 at 547.700 kb on - strand, within ABZR87_RS18695 at 547.700 kb on - strand, within ABZR87_RS18695 at 547.700 kb on - strand, within ABZR87_RS18695 at 547.700 kb on - strand, within ABZR87_RS18695 at 547.769 kb on - strand, within ABZR87_RS18695 at 547.769 kb on - strand, within ABZR87_RS18695 at 547.769 kb on - strand, within ABZR87_RS18695 at 547.977 kb on + strand, within ABZR87_RS18695 at 547.977 kb on + strand, within ABZR87_RS18695 at 547.977 kb on + strand, within ABZR87_RS18695 at 547.978 kb on - strand, within ABZR87_RS18695 at 548.313 kb on + strand, within ABZR87_RS18700 at 548.313 kb on + strand, within ABZR87_RS18700 at 548.314 kb on - strand, within ABZR87_RS18700 at 548.371 kb on + strand, within ABZR87_RS18700 at 548.371 kb on + strand, within ABZR87_RS18700 at 548.371 kb on + strand, within ABZR87_RS18700 at 548.372 kb on - strand, within ABZR87_RS18700 at 548.382 kb on + strand, within ABZR87_RS18700 at 548.383 kb on - strand, within ABZR87_RS18700 at 548.383 kb on - strand, within ABZR87_RS18700 at 548.475 kb on + strand at 548.534 kb on + strand at 548.534 kb on + strand at 548.534 kb on + strand at 548.534 kb on + strand at 548.729 kb on + strand, within ABZR87_RS18705 at 548.729 kb on + strand, within ABZR87_RS18705 at 548.933 kb on + strand, within ABZR87_RS18705 at 548.934 kb on - strand, within ABZR87_RS18705 at 548.934 kb on - strand, within ABZR87_RS18705 at 548.934 kb on - strand, within ABZR87_RS18705 at 548.934 kb on - strand, within ABZR87_RS18705 at 548.969 kb on + strand, within ABZR87_RS18705
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 546,257 + ABZR87_RS18690 0.51 -1.2 546,257 + ABZR87_RS18690 0.51 -1.9 546,258 - ABZR87_RS18690 0.51 +0.1 546,278 + ABZR87_RS18690 0.53 -0.5 546,278 + ABZR87_RS18690 0.53 +1.2 546,278 + ABZR87_RS18690 0.53 +0.2 546,278 + ABZR87_RS18690 0.53 +0.1 546,278 + ABZR87_RS18690 0.53 +0.7 546,278 + ABZR87_RS18690 0.53 -0.0 546,278 + ABZR87_RS18690 0.53 +0.5 546,279 - ABZR87_RS18690 0.53 -0.9 546,279 - ABZR87_RS18690 0.53 +0.8 546,279 - ABZR87_RS18690 0.53 -0.2 546,279 - ABZR87_RS18690 0.53 -1.6 546,279 - ABZR87_RS18690 0.53 -0.3 546,425 + ABZR87_RS18690 0.65 +0.2 546,426 - ABZR87_RS18690 0.65 -0.3 546,479 + ABZR87_RS18690 0.69 -0.7 546,479 + ABZR87_RS18690 0.69 -0.8 546,480 - ABZR87_RS18690 0.69 +1.0 546,480 - ABZR87_RS18690 0.69 -0.4 546,480 - ABZR87_RS18690 0.69 +0.8 546,480 - ABZR87_RS18690 0.69 +1.3 546,480 - ABZR87_RS18690 0.69 +0.0 546,536 + ABZR87_RS18690 0.74 +0.5 546,536 + ABZR87_RS18690 0.74 -0.1 546,536 + ABZR87_RS18690 0.74 -0.2 546,536 + ABZR87_RS18690 0.74 +0.3 546,536 + ABZR87_RS18690 0.74 -0.1 546,537 - ABZR87_RS18690 0.74 -0.7 546,537 - ABZR87_RS18690 0.74 -0.1 546,537 - ABZR87_RS18690 0.74 +1.0 546,537 - ABZR87_RS18690 0.74 -1.2 546,537 - ABZR87_RS18690 0.74 +0.6 546,537 - ABZR87_RS18690 0.74 +0.1 546,537 - ABZR87_RS18690 0.74 -0.4 546,557 + ABZR87_RS18690 0.76 +0.3 546,557 + ABZR87_RS18690 0.76 -0.3 546,558 - ABZR87_RS18690 0.76 +0.9 546,558 - ABZR87_RS18690 0.76 -0.5 546,558 - ABZR87_RS18690 0.76 -0.3 546,632 + ABZR87_RS18690 0.82 -0.2 546,632 + ABZR87_RS18690 0.82 -1.4 546,633 - ABZR87_RS18690 0.82 +1.6 546,633 - ABZR87_RS18690 0.82 -0.4 546,693 - ABZR87_RS18690 0.87 -1.3 546,693 - ABZR87_RS18690 0.87 -0.1 547,157 + +2.3 547,158 - +0.5 547,158 - -0.5 547,158 - +0.8 547,168 + +0.7 547,168 + +1.2 547,168 + +0.6 547,169 - +0.3 547,169 - -0.9 547,169 - +0.4 547,169 - +0.2 547,171 + +1.1 547,171 + +1.0 547,171 + +0.5 547,171 + -1.4 547,171 + -0.5 547,172 - +1.2 547,172 - -0.5 547,172 - +0.6 547,237 + +1.1 547,237 + +1.2 547,237 + -0.7 547,237 + -0.4 547,237 + -1.7 547,238 - -0.8 547,238 - -1.4 547,238 - -0.3 547,240 + -0.6 547,240 + +0.6 547,240 + -0.1 547,240 + +1.6 547,241 - -1.5 547,241 - -0.8 547,241 - -1.7 547,241 - -0.1 547,318 + ABZR87_RS18695 0.14 -2.2 547,318 + ABZR87_RS18695 0.14 -0.6 547,319 - ABZR87_RS18695 0.14 -3.6 547,654 + ABZR87_RS18695 0.49 -2.7 547,697 - ABZR87_RS18695 0.54 -0.6 547,699 + ABZR87_RS18695 0.54 +1.1 547,699 + ABZR87_RS18695 0.54 -1.1 547,699 + ABZR87_RS18695 0.54 -1.9 547,699 + ABZR87_RS18695 0.54 -1.8 547,700 - ABZR87_RS18695 0.54 -1.3 547,700 - ABZR87_RS18695 0.54 -1.9 547,700 - ABZR87_RS18695 0.54 -1.3 547,700 - ABZR87_RS18695 0.54 -0.1 547,700 - ABZR87_RS18695 0.54 -1.3 547,700 - ABZR87_RS18695 0.54 -0.9 547,700 - ABZR87_RS18695 0.54 -1.6 547,769 - ABZR87_RS18695 0.61 -1.8 547,769 - ABZR87_RS18695 0.61 -2.2 547,769 - ABZR87_RS18695 0.61 -0.2 547,977 + ABZR87_RS18695 0.83 -2.5 547,977 + ABZR87_RS18695 0.83 -0.2 547,977 + ABZR87_RS18695 0.83 -0.2 547,978 - ABZR87_RS18695 0.83 -0.6 548,313 + ABZR87_RS18700 0.49 -1.8 548,313 + ABZR87_RS18700 0.49 +0.4 548,314 - ABZR87_RS18700 0.50 -1.5 548,371 + ABZR87_RS18700 0.68 -0.6 548,371 + ABZR87_RS18700 0.68 +0.1 548,371 + ABZR87_RS18700 0.68 +0.0 548,372 - ABZR87_RS18700 0.68 -2.3 548,382 + ABZR87_RS18700 0.72 -0.2 548,383 - ABZR87_RS18700 0.72 +1.9 548,383 - ABZR87_RS18700 0.72 -0.4 548,475 + -0.1 548,534 + -0.3 548,534 + +0.7 548,534 + -0.7 548,534 + +0.3 548,729 + ABZR87_RS18705 0.23 -0.1 548,729 + ABZR87_RS18705 0.23 +1.3 548,933 + ABZR87_RS18705 0.43 -1.3 548,934 - ABZR87_RS18705 0.43 +0.4 548,934 - ABZR87_RS18705 0.43 +0.3 548,934 - ABZR87_RS18705 0.43 -0.2 548,934 - ABZR87_RS18705 0.43 -1.6 548,969 + ABZR87_RS18705 0.46 +0.7
Or see this region's nucleotide sequence