Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18640 and ABZR87_RS18645 are separated by 100 nucleotides ABZR87_RS18645 and ABZR87_RS18650 are separated by 141 nucleotides ABZR87_RS18650 and ABZR87_RS18655 are separated by 81 nucleotides
ABZR87_RS18640: ABZR87_RS18640 - ATP-dependent helicase, at 534,872 to 537,022
_RS18640
ABZR87_RS18645: ABZR87_RS18645 - hypothetical protein, at 537,123 to 537,449
_RS18645
ABZR87_RS18650: ABZR87_RS18650 - YnfA family protein, at 537,591 to 537,923
_RS18650
ABZR87_RS18655: ABZR87_RS18655 - carbohydrate kinase, at 538,005 to 538,952
_RS18655
Position (kb) 537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 536.130 kb on + strand, within ABZR87_RS18640 at 536.130 kb on + strand, within ABZR87_RS18640 at 536.131 kb on - strand, within ABZR87_RS18640 at 536.227 kb on - strand, within ABZR87_RS18640 at 536.305 kb on - strand, within ABZR87_RS18640 at 536.359 kb on - strand, within ABZR87_RS18640 at 536.463 kb on + strand, within ABZR87_RS18640 at 536.670 kb on + strand, within ABZR87_RS18640 at 536.671 kb on - strand, within ABZR87_RS18640 at 536.671 kb on - strand, within ABZR87_RS18640 at 536.920 kb on + strand at 536.921 kb on - strand at 537.043 kb on - strand at 537.049 kb on - strand at 537.056 kb on + strand at 537.260 kb on + strand, within ABZR87_RS18645 at 537.543 kb on + strand at 537.543 kb on + strand at 537.543 kb on + strand at 537.544 kb on - strand at 537.570 kb on + strand at 537.570 kb on + strand at 537.575 kb on - strand at 537.716 kb on + strand, within ABZR87_RS18650 at 537.717 kb on - strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.718 kb on + strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.719 kb on - strand, within ABZR87_RS18650 at 537.739 kb on + strand, within ABZR87_RS18650 at 537.739 kb on + strand, within ABZR87_RS18650 at 537.739 kb on + strand, within ABZR87_RS18650 at 537.740 kb on - strand, within ABZR87_RS18650 at 537.740 kb on - strand, within ABZR87_RS18650 at 537.816 kb on + strand, within ABZR87_RS18650 at 537.817 kb on - strand, within ABZR87_RS18650 at 537.817 kb on - strand, within ABZR87_RS18650 at 537.859 kb on + strand, within ABZR87_RS18650 at 537.859 kb on + strand, within ABZR87_RS18650 at 537.860 kb on - strand, within ABZR87_RS18650 at 537.860 kb on - strand, within ABZR87_RS18650 at 537.860 kb on - strand, within ABZR87_RS18650 at 537.860 kb on - strand, within ABZR87_RS18650 at 537.909 kb on - strand at 537.909 kb on - strand at 537.949 kb on + strand at 537.949 kb on + strand at 538.235 kb on + strand, within ABZR87_RS18655 at 538.236 kb on - strand, within ABZR87_RS18655
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 536,130 + ABZR87_RS18640 0.58 -0.4 536,130 + ABZR87_RS18640 0.58 -0.7 536,131 - ABZR87_RS18640 0.59 -0.3 536,227 - ABZR87_RS18640 0.63 +0.3 536,305 - ABZR87_RS18640 0.67 +0.2 536,359 - ABZR87_RS18640 0.69 -0.8 536,463 + ABZR87_RS18640 0.74 +1.3 536,670 + ABZR87_RS18640 0.84 +1.2 536,671 - ABZR87_RS18640 0.84 -0.6 536,671 - ABZR87_RS18640 0.84 -0.5 536,920 + -0.1 536,921 - -1.3 537,043 - +1.6 537,049 - +0.6 537,056 + -0.2 537,260 + ABZR87_RS18645 0.42 -0.4 537,543 + -1.3 537,543 + +0.2 537,543 + +2.2 537,544 - -0.5 537,570 + -0.3 537,570 + -0.2 537,575 - -0.1 537,716 + ABZR87_RS18650 0.38 -0.9 537,717 - ABZR87_RS18650 0.38 -1.3 537,718 + ABZR87_RS18650 0.38 -0.8 537,718 + ABZR87_RS18650 0.38 -0.2 537,718 + ABZR87_RS18650 0.38 +0.4 537,718 + ABZR87_RS18650 0.38 -1.6 537,718 + ABZR87_RS18650 0.38 -0.2 537,718 + ABZR87_RS18650 0.38 -0.8 537,718 + ABZR87_RS18650 0.38 +0.6 537,718 + ABZR87_RS18650 0.38 -1.6 537,718 + ABZR87_RS18650 0.38 -0.3 537,718 + ABZR87_RS18650 0.38 +0.1 537,719 - ABZR87_RS18650 0.38 +1.1 537,719 - ABZR87_RS18650 0.38 +0.1 537,719 - ABZR87_RS18650 0.38 -0.3 537,719 - ABZR87_RS18650 0.38 -1.1 537,719 - ABZR87_RS18650 0.38 +1.1 537,719 - ABZR87_RS18650 0.38 -0.7 537,719 - ABZR87_RS18650 0.38 -1.8 537,719 - ABZR87_RS18650 0.38 +0.4 537,719 - ABZR87_RS18650 0.38 -0.1 537,719 - ABZR87_RS18650 0.38 -0.2 537,719 - ABZR87_RS18650 0.38 +0.3 537,719 - ABZR87_RS18650 0.38 +0.4 537,739 + ABZR87_RS18650 0.44 -1.6 537,739 + ABZR87_RS18650 0.44 +1.1 537,739 + ABZR87_RS18650 0.44 -0.7 537,740 - ABZR87_RS18650 0.45 -0.9 537,740 - ABZR87_RS18650 0.45 -0.1 537,816 + ABZR87_RS18650 0.68 -2.2 537,817 - ABZR87_RS18650 0.68 +0.2 537,817 - ABZR87_RS18650 0.68 +0.9 537,859 + ABZR87_RS18650 0.80 -1.7 537,859 + ABZR87_RS18650 0.80 -0.9 537,860 - ABZR87_RS18650 0.81 +0.0 537,860 - ABZR87_RS18650 0.81 +0.1 537,860 - ABZR87_RS18650 0.81 -1.0 537,860 - ABZR87_RS18650 0.81 +0.2 537,909 - +0.1 537,909 - +0.2 537,949 + -0.2 537,949 + -0.2 538,235 + ABZR87_RS18655 0.24 -0.7 538,236 - ABZR87_RS18655 0.24 -0.0
Or see this region's nucleotide sequence