Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18475 and ABZR87_RS18480 are separated by 6 nucleotides ABZR87_RS18480 and ABZR87_RS18485 are separated by 271 nucleotides ABZR87_RS18485 and ABZR87_RS18490 are separated by 13 nucleotides ABZR87_RS18490 and ABZR87_RS18495 are separated by 125 nucleotides
ABZR87_RS18475: ABZR87_RS18475 - recombination-associated protein RdgC, at 503,179 to 504,102
_RS18475
ABZR87_RS18480: ABZR87_RS18480 - glutathione S-transferase family protein, at 504,109 to 504,762
_RS18480
ABZR87_RS18485: ABZR87_RS18485 - GGDEF domain-containing protein, at 505,034 to 506,215
_RS18485
ABZR87_RS18490: ABZR87_RS18490 - LysR family transcriptional regulator, at 506,229 to 507,086
_RS18490
ABZR87_RS18495: ABZR87_RS18495 - multidrug transporter subunit MdtD, at 507,212 to 508,630
_RS18495
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 504.167 kb on + strand at 504.198 kb on - strand, within ABZR87_RS18480 at 504.253 kb on + strand, within ABZR87_RS18480 at 504.254 kb on - strand, within ABZR87_RS18480 at 504.254 kb on - strand, within ABZR87_RS18480 at 504.254 kb on - strand, within ABZR87_RS18480 at 504.578 kb on + strand, within ABZR87_RS18480 at 504.659 kb on + strand, within ABZR87_RS18480 at 504.660 kb on - strand, within ABZR87_RS18480 at 504.747 kb on + strand at 504.747 kb on + strand at 504.747 kb on + strand at 504.747 kb on + strand at 504.748 kb on - strand at 504.983 kb on + strand at 505.027 kb on + strand at 505.037 kb on + strand at 505.038 kb on - strand at 505.038 kb on - strand at 505.058 kb on + strand at 505.058 kb on + strand at 505.058 kb on + strand at 505.059 kb on - strand at 505.186 kb on + strand, within ABZR87_RS18485 at 505.186 kb on + strand, within ABZR87_RS18485 at 505.262 kb on + strand, within ABZR87_RS18485 at 505.524 kb on - strand, within ABZR87_RS18485 at 505.565 kb on + strand, within ABZR87_RS18485 at 505.566 kb on - strand, within ABZR87_RS18485 at 505.566 kb on - strand, within ABZR87_RS18485 at 505.623 kb on - strand, within ABZR87_RS18485 at 505.706 kb on + strand, within ABZR87_RS18485 at 505.706 kb on + strand, within ABZR87_RS18485 at 505.707 kb on - strand, within ABZR87_RS18485 at 505.836 kb on - strand, within ABZR87_RS18485 at 505.836 kb on - strand, within ABZR87_RS18485 at 506.135 kb on + strand at 506.135 kb on + strand at 506.135 kb on + strand at 506.136 kb on - strand at 506.213 kb on + strand at 506.409 kb on - strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.439 kb on - strand, within ABZR87_RS18490 at 506.692 kb on + strand, within ABZR87_RS18490 at 506.692 kb on + strand, within ABZR87_RS18490 at 506.693 kb on - strand, within ABZR87_RS18490 at 506.693 kb on - strand, within ABZR87_RS18490 at 507.029 kb on + strand at 507.029 kb on + strand at 507.029 kb on + strand at 507.035 kb on + strand at 507.036 kb on - strand at 507.036 kb on - strand at 507.130 kb on - strand at 507.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 504,167 + -0.9 504,198 - ABZR87_RS18480 0.14 +0.6 504,253 + ABZR87_RS18480 0.22 -0.6 504,254 - ABZR87_RS18480 0.22 +0.9 504,254 - ABZR87_RS18480 0.22 -1.3 504,254 - ABZR87_RS18480 0.22 +0.6 504,578 + ABZR87_RS18480 0.72 +0.7 504,659 + ABZR87_RS18480 0.84 +0.2 504,660 - ABZR87_RS18480 0.84 +1.2 504,747 + +1.4 504,747 + +0.5 504,747 + +1.2 504,747 + -0.2 504,748 - -0.8 504,983 + -0.8 505,027 + +1.6 505,037 + +1.2 505,038 - -0.5 505,038 - +0.5 505,058 + +0.2 505,058 + +0.7 505,058 + +0.2 505,059 - -0.2 505,186 + ABZR87_RS18485 0.13 -0.2 505,186 + ABZR87_RS18485 0.13 -1.5 505,262 + ABZR87_RS18485 0.19 -0.3 505,524 - ABZR87_RS18485 0.41 -0.1 505,565 + ABZR87_RS18485 0.45 -0.5 505,566 - ABZR87_RS18485 0.45 -0.7 505,566 - ABZR87_RS18485 0.45 +2.1 505,623 - ABZR87_RS18485 0.50 +2.0 505,706 + ABZR87_RS18485 0.57 +0.4 505,706 + ABZR87_RS18485 0.57 +0.8 505,707 - ABZR87_RS18485 0.57 -0.2 505,836 - ABZR87_RS18485 0.68 +1.1 505,836 - ABZR87_RS18485 0.68 -0.1 506,135 + -1.2 506,135 + -1.1 506,135 + -0.6 506,136 - -1.2 506,213 + -2.3 506,409 - ABZR87_RS18490 0.21 -2.0 506,438 + ABZR87_RS18490 0.24 -1.5 506,438 + ABZR87_RS18490 0.24 +0.9 506,438 + ABZR87_RS18490 0.24 +1.7 506,438 + ABZR87_RS18490 0.24 -0.2 506,439 - ABZR87_RS18490 0.24 +0.2 506,692 + ABZR87_RS18490 0.54 +0.3 506,692 + ABZR87_RS18490 0.54 -1.5 506,693 - ABZR87_RS18490 0.54 +0.4 506,693 - ABZR87_RS18490 0.54 +0.9 507,029 + +0.0 507,029 + -2.0 507,029 + -0.2 507,035 + -0.7 507,036 - -2.6 507,036 - +0.2 507,130 - -0.0 507,159 + -1.5
Or see this region's nucleotide sequence