Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18395 and ABZR87_RS18400 are separated by 60 nucleotides ABZR87_RS18400 and ABZR87_RS18405 are separated by 49 nucleotides ABZR87_RS18405 and ABZR87_RS18410 are separated by 81 nucleotides
ABZR87_RS18395: ABZR87_RS18395 - lysophospholipid acyltransferase family protein, at 492,847 to 493,725
_RS18395
ABZR87_RS18400: ABZR87_RS18400 - hypothetical protein, at 493,786 to 494,007
_RS18400
ABZR87_RS18405: ABZR87_RS18405 - hypothetical protein, at 494,057 to 494,311
_RS18405
ABZR87_RS18410: ABZR87_RS18410 - hypothetical protein, at 494,393 to 494,626
_RS18410
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 492.835 kb on + strand at 492.849 kb on - strand at 492.891 kb on + strand at 492.891 kb on + strand at 492.891 kb on + strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.894 kb on - strand at 492.902 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.915 kb on - strand at 492.915 kb on - strand at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.116 kb on - strand, within ABZR87_RS18395 at 493.210 kb on + strand, within ABZR87_RS18395 at 493.302 kb on + strand, within ABZR87_RS18395 at 493.302 kb on + strand, within ABZR87_RS18395 at 493.349 kb on + strand, within ABZR87_RS18395 at 493.610 kb on + strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.611 kb on - strand, within ABZR87_RS18395 at 493.788 kb on - strand at 493.844 kb on + strand, within ABZR87_RS18400 at 493.845 kb on - strand, within ABZR87_RS18400 at 494.026 kb on + strand at 494.026 kb on + strand at 494.058 kb on + strand at 494.059 kb on - strand at 494.059 kb on - strand at 494.082 kb on + strand at 494.082 kb on + strand at 494.083 kb on - strand, within ABZR87_RS18405 at 494.094 kb on - strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.134 kb on + strand, within ABZR87_RS18405 at 494.135 kb on - strand, within ABZR87_RS18405 at 494.247 kb on + strand, within ABZR87_RS18405 at 494.247 kb on + strand, within ABZR87_RS18405 at 494.248 kb on - strand, within ABZR87_RS18405 at 494.248 kb on - strand, within ABZR87_RS18405 at 494.305 kb on + strand at 494.305 kb on + strand at 494.305 kb on + strand at 494.305 kb on + strand at 494.306 kb on - strand at 494.488 kb on + strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.489 kb on - strand, within ABZR87_RS18410 at 494.507 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.551 kb on - strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.589 kb on + strand, within ABZR87_RS18410 at 494.604 kb on + strand at 494.702 kb on - strand at 494.715 kb on + strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.801 kb on + strand at 494.802 kb on - strand at 494.802 kb on - strand at 494.804 kb on + strand at 494.804 kb on + strand at 494.805 kb on - strand at 494.805 kb on - strand at 494.846 kb on + strand at 494.846 kb on + strand at 494.847 kb on - strand at 494.847 kb on - strand at 494.884 kb on - strand at 494.884 kb on - strand at 494.910 kb on + strand at 494.911 kb on - strand at 494.911 kb on - strand at 494.972 kb on + strand at 494.972 kb on + strand at 494.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 492,835 + +0.1 492,849 - +0.5 492,891 + +0.6 492,891 + +0.1 492,891 + -0.0 492,892 - +1.4 492,892 - -0.2 492,892 - -0.8 492,892 - -2.4 492,892 - -0.8 492,894 - -0.5 492,902 + -1.3 492,914 + -1.1 492,914 + -0.9 492,914 + -2.1 492,914 + +0.2 492,915 - -2.2 492,915 - -2.2 493,115 + ABZR87_RS18395 0.30 -0.8 493,115 + ABZR87_RS18395 0.30 -0.9 493,115 + ABZR87_RS18395 0.30 +0.1 493,115 + ABZR87_RS18395 0.30 -0.1 493,116 - ABZR87_RS18395 0.31 -0.7 493,210 + ABZR87_RS18395 0.41 -1.3 493,302 + ABZR87_RS18395 0.52 -0.9 493,302 + ABZR87_RS18395 0.52 -0.2 493,349 + ABZR87_RS18395 0.57 +0.4 493,610 + ABZR87_RS18395 0.87 +0.3 493,611 - ABZR87_RS18395 0.87 +0.4 493,611 - ABZR87_RS18395 0.87 -0.3 493,611 - ABZR87_RS18395 0.87 -1.2 493,788 - -0.8 493,844 + ABZR87_RS18400 0.26 -2.8 493,845 - ABZR87_RS18400 0.27 -0.1 494,026 + -0.7 494,026 + -0.0 494,058 + -0.4 494,059 - +0.0 494,059 - -1.4 494,082 + +0.5 494,082 + +1.1 494,083 - ABZR87_RS18405 0.10 +0.4 494,094 - ABZR87_RS18405 0.15 -0.4 494,134 + ABZR87_RS18405 0.30 +1.3 494,134 + ABZR87_RS18405 0.30 -1.6 494,134 + ABZR87_RS18405 0.30 +0.6 494,135 - ABZR87_RS18405 0.31 -0.4 494,247 + ABZR87_RS18405 0.75 +0.3 494,247 + ABZR87_RS18405 0.75 -0.7 494,248 - ABZR87_RS18405 0.75 -0.3 494,248 - ABZR87_RS18405 0.75 -0.2 494,305 + +1.3 494,305 + -0.9 494,305 + -2.0 494,305 + -0.2 494,306 - -0.7 494,488 + ABZR87_RS18410 0.41 -0.6 494,489 - ABZR87_RS18410 0.41 +0.6 494,489 - ABZR87_RS18410 0.41 -0.5 494,507 - ABZR87_RS18410 0.49 +0.8 494,551 - ABZR87_RS18410 0.68 -0.5 494,551 - ABZR87_RS18410 0.68 -1.0 494,551 - ABZR87_RS18410 0.68 -0.9 494,589 + ABZR87_RS18410 0.84 +1.2 494,589 + ABZR87_RS18410 0.84 +0.1 494,604 + -0.9 494,702 - +1.7 494,715 + -1.0 494,781 + +0.3 494,782 - -1.2 494,782 - +1.1 494,801 + -1.5 494,802 - -1.6 494,802 - +0.0 494,804 + +1.1 494,804 + -0.8 494,805 - -0.6 494,805 - -0.5 494,846 + +1.6 494,846 + +0.0 494,847 - +0.6 494,847 - +0.8 494,884 - +0.1 494,884 - -1.2 494,910 + +0.2 494,911 - -0.3 494,911 - -0.1 494,972 + -0.0 494,972 + +1.0 494,986 - -2.0
Or see this region's nucleotide sequence