Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18325

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18315 and ABZR87_RS18320 overlap by 14 nucleotidesABZR87_RS18320 and ABZR87_RS18325 are separated by 7 nucleotidesABZR87_RS18325 and ABZR87_RS18330 are separated by 2 nucleotides ABZR87_RS18315: ABZR87_RS18315 - DUF971 domain-containing protein, at 476,546 to 476,836 _RS18315 ABZR87_RS18320: ABZR87_RS18320 - HEAT repeat domain-containing protein, at 476,823 to 477,782 _RS18320 ABZR87_RS18325: ABZR87_RS18325 - ferredoxin family protein, at 477,790 to 478,056 _RS18325 ABZR87_RS18330: ABZR87_RS18330 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 478,059 to 479,783 _RS18330 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2 3at 477.077 kb on - strand, within ABZR87_RS18320at 477.077 kb on - strand, within ABZR87_RS18320at 477.478 kb on + strand, within ABZR87_RS18320at 477.803 kb on + strandat 477.860 kb on + strand, within ABZR87_RS18325at 477.860 kb on + strand, within ABZR87_RS18325at 478.127 kb on - strandat 478.177 kb on + strandat 478.177 kb on + strandat 478.177 kb on + strandat 478.223 kb on - strandat 478.241 kb on - strand, within ABZR87_RS18330at 478.241 kb on - strand, within ABZR87_RS18330at 478.438 kb on + strand, within ABZR87_RS18330at 478.466 kb on - strand, within ABZR87_RS18330at 478.582 kb on + strand, within ABZR87_RS18330at 478.582 kb on + strand, within ABZR87_RS18330at 478.583 kb on - strand, within ABZR87_RS18330at 478.583 kb on - strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.616 kb on - strand, within ABZR87_RS18330at 478.636 kb on + strand, within ABZR87_RS18330at 478.636 kb on + strand, within ABZR87_RS18330at 478.636 kb on + strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.673 kb on - strand, within ABZR87_RS18330at 478.711 kb on + strand, within ABZR87_RS18330at 478.712 kb on - strand, within ABZR87_RS18330at 478.712 kb on - strand, within ABZR87_RS18330at 478.927 kb on + strand, within ABZR87_RS18330at 478.927 kb on + strand, within ABZR87_RS18330at 478.928 kb on - strand, within ABZR87_RS18330at 478.957 kb on + strand, within ABZR87_RS18330at 478.957 kb on + strand, within ABZR87_RS18330at 479.023 kb on + strand, within ABZR87_RS18330at 479.024 kb on - strand, within ABZR87_RS18330at 479.024 kb on - strand, within ABZR87_RS18330

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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477,077 - ABZR87_RS18320 0.26 +0.1
477,077 - ABZR87_RS18320 0.26 +2.6
477,478 + ABZR87_RS18320 0.68 -0.1
477,803 + -0.6
477,860 + ABZR87_RS18325 0.26 -1.8
477,860 + ABZR87_RS18325 0.26 -1.0
478,127 - -0.3
478,177 + +0.2
478,177 + +0.7
478,177 + -0.2
478,223 - -1.3
478,241 - ABZR87_RS18330 0.11 +1.7
478,241 - ABZR87_RS18330 0.11 -1.3
478,438 + ABZR87_RS18330 0.22 -0.5
478,466 - ABZR87_RS18330 0.24 -0.7
478,582 + ABZR87_RS18330 0.30 +0.2
478,582 + ABZR87_RS18330 0.30 +0.6
478,583 - ABZR87_RS18330 0.30 -0.6
478,583 - ABZR87_RS18330 0.30 +0.7
478,615 + ABZR87_RS18330 0.32 -0.8
478,615 + ABZR87_RS18330 0.32 +2.3
478,615 + ABZR87_RS18330 0.32 +0.0
478,615 + ABZR87_RS18330 0.32 +0.8
478,616 - ABZR87_RS18330 0.32 -0.1
478,636 + ABZR87_RS18330 0.33 -0.4
478,636 + ABZR87_RS18330 0.33 -0.7
478,636 + ABZR87_RS18330 0.33 +0.1
478,637 - ABZR87_RS18330 0.34 -1.1
478,637 - ABZR87_RS18330 0.34 +0.2
478,637 - ABZR87_RS18330 0.34 +3.0
478,637 - ABZR87_RS18330 0.34 -0.5
478,637 - ABZR87_RS18330 0.34 -0.7
478,637 - ABZR87_RS18330 0.34 +0.4
478,673 - ABZR87_RS18330 0.36 -0.1
478,711 + ABZR87_RS18330 0.38 +0.4
478,712 - ABZR87_RS18330 0.38 +0.2
478,712 - ABZR87_RS18330 0.38 +1.3
478,927 + ABZR87_RS18330 0.50 -0.8
478,927 + ABZR87_RS18330 0.50 -0.5
478,928 - ABZR87_RS18330 0.50 +0.1
478,957 + ABZR87_RS18330 0.52 -1.1
478,957 + ABZR87_RS18330 0.52 +1.4
479,023 + ABZR87_RS18330 0.56 +0.2
479,024 - ABZR87_RS18330 0.56 +0.1
479,024 - ABZR87_RS18330 0.56 +0.7

Or see this region's nucleotide sequence