Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17605

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17600 and ABZR87_RS17605 overlap by 4 nucleotidesABZR87_RS17605 and ABZR87_RS17610 overlap by 4 nucleotides ABZR87_RS17600: ABZR87_RS17600 - bifunctional lysylphosphatidylglycerol flippase/synthetase MprF, at 311,460 to 314,093 _RS17600 ABZR87_RS17605: ABZR87_RS17605 - AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase, at 314,090 to 315,853 _RS17605 ABZR87_RS17610: ABZR87_RS17610 - SulP family inorganic anion transporter, at 315,850 to 317,619 _RS17610 Position (kb) 314 315 316Strain fitness (log2 ratio) -2 -1 0 1 2at 313.224 kb on + strand, within ABZR87_RS17600at 313.224 kb on + strand, within ABZR87_RS17600at 313.224 kb on + strand, within ABZR87_RS17600at 313.224 kb on + strand, within ABZR87_RS17600at 313.225 kb on - strand, within ABZR87_RS17600at 313.225 kb on - strand, within ABZR87_RS17600at 313.225 kb on - strand, within ABZR87_RS17600at 313.225 kb on - strand, within ABZR87_RS17600at 313.307 kb on + strand, within ABZR87_RS17600at 313.377 kb on + strand, within ABZR87_RS17600at 313.378 kb on - strand, within ABZR87_RS17600at 313.401 kb on + strand, within ABZR87_RS17600at 313.401 kb on + strand, within ABZR87_RS17600at 313.401 kb on + strand, within ABZR87_RS17600at 313.401 kb on + strand, within ABZR87_RS17600at 313.401 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.422 kb on + strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.423 kb on - strand, within ABZR87_RS17600at 313.638 kb on + strand, within ABZR87_RS17600at 313.639 kb on - strand, within ABZR87_RS17600at 313.639 kb on - strand, within ABZR87_RS17600at 313.639 kb on - strand, within ABZR87_RS17600at 313.639 kb on - strand, within ABZR87_RS17600at 313.828 kb on - strand, within ABZR87_RS17600at 313.828 kb on - strand, within ABZR87_RS17600at 313.828 kb on - strand, within ABZR87_RS17600at 313.938 kb on + strandat 313.939 kb on - strandat 313.939 kb on - strandat 313.998 kb on + strandat 313.999 kb on - strandat 314.019 kb on - strandat 314.140 kb on - strandat 314.323 kb on + strand, within ABZR87_RS17605at 314.324 kb on - strand, within ABZR87_RS17605at 314.324 kb on - strand, within ABZR87_RS17605at 314.702 kb on + strand, within ABZR87_RS17605at 314.768 kb on + strand, within ABZR87_RS17605at 314.769 kb on - strand, within ABZR87_RS17605at 315.070 kb on + strand, within ABZR87_RS17605at 315.260 kb on - strand, within ABZR87_RS17605at 315.383 kb on + strand, within ABZR87_RS17605at 315.438 kb on + strand, within ABZR87_RS17605at 315.446 kb on + strand, within ABZR87_RS17605at 315.696 kb on - strandat 315.696 kb on - strandat 315.791 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.796 kb on + strandat 315.797 kb on - strandat 315.851 kb on + strandat 315.982 kb on + strandat 315.982 kb on + strandat 315.982 kb on + strandat 315.983 kb on - strandat 316.469 kb on + strand, within ABZR87_RS17610at 316.658 kb on + strand, within ABZR87_RS17610at 316.784 kb on + strand, within ABZR87_RS17610at 316.785 kb on - strand, within ABZR87_RS17610at 316.796 kb on + strand, within ABZR87_RS17610

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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313,224 + ABZR87_RS17600 0.67 -1.3
313,224 + ABZR87_RS17600 0.67 -1.2
313,224 + ABZR87_RS17600 0.67 -0.1
313,224 + ABZR87_RS17600 0.67 -1.1
313,225 - ABZR87_RS17600 0.67 -1.9
313,225 - ABZR87_RS17600 0.67 -1.3
313,225 - ABZR87_RS17600 0.67 -0.3
313,225 - ABZR87_RS17600 0.67 -1.4
313,307 + ABZR87_RS17600 0.70 +0.2
313,377 + ABZR87_RS17600 0.73 -0.2
313,378 - ABZR87_RS17600 0.73 -1.0
313,401 + ABZR87_RS17600 0.74 +0.5
313,401 + ABZR87_RS17600 0.74 -1.0
313,401 + ABZR87_RS17600 0.74 -1.5
313,401 + ABZR87_RS17600 0.74 +0.7
313,401 + ABZR87_RS17600 0.74 -1.7
313,422 + ABZR87_RS17600 0.74 +1.3
313,422 + ABZR87_RS17600 0.74 -1.0
313,422 + ABZR87_RS17600 0.74 +0.3
313,422 + ABZR87_RS17600 0.74 +0.2
313,422 + ABZR87_RS17600 0.74 -0.8
313,422 + ABZR87_RS17600 0.74 -0.8
313,422 + ABZR87_RS17600 0.74 -0.4
313,422 + ABZR87_RS17600 0.74 -0.6
313,423 - ABZR87_RS17600 0.75 +0.3
313,423 - ABZR87_RS17600 0.75 +1.6
313,423 - ABZR87_RS17600 0.75 +0.0
313,423 - ABZR87_RS17600 0.75 -0.8
313,423 - ABZR87_RS17600 0.75 +1.2
313,423 - ABZR87_RS17600 0.75 -0.2
313,423 - ABZR87_RS17600 0.75 +1.2
313,423 - ABZR87_RS17600 0.75 -0.7
313,638 + ABZR87_RS17600 0.83 -0.0
313,639 - ABZR87_RS17600 0.83 +0.8
313,639 - ABZR87_RS17600 0.83 -0.7
313,639 - ABZR87_RS17600 0.83 -2.0
313,639 - ABZR87_RS17600 0.83 -1.0
313,828 - ABZR87_RS17600 0.90 -0.2
313,828 - ABZR87_RS17600 0.90 +1.4
313,828 - ABZR87_RS17600 0.90 -0.6
313,938 + +0.5
313,939 - +0.4
313,939 - +2.0
313,998 + +0.7
313,999 - +0.8
314,019 - +0.1
314,140 - +0.4
314,323 + ABZR87_RS17605 0.13 +0.9
314,324 - ABZR87_RS17605 0.13 +0.7
314,324 - ABZR87_RS17605 0.13 -1.0
314,702 + ABZR87_RS17605 0.35 -2.3
314,768 + ABZR87_RS17605 0.38 -1.8
314,769 - ABZR87_RS17605 0.38 +0.6
315,070 + ABZR87_RS17605 0.56 -0.4
315,260 - ABZR87_RS17605 0.66 +2.3
315,383 + ABZR87_RS17605 0.73 -1.1
315,438 + ABZR87_RS17605 0.76 +1.2
315,446 + ABZR87_RS17605 0.77 +1.5
315,696 - -1.9
315,696 - +1.8
315,791 + -1.2
315,796 + +0.4
315,796 + +0.7
315,796 + -0.1
315,796 + -0.4
315,796 + +0.1
315,797 - -0.3
315,851 + +0.0
315,982 + +1.8
315,982 + +0.7
315,982 + +0.5
315,983 - -0.2
316,469 + ABZR87_RS17610 0.35 +0.2
316,658 + ABZR87_RS17610 0.46 -0.7
316,784 + ABZR87_RS17610 0.53 +1.0
316,785 - ABZR87_RS17610 0.53 -0.1
316,796 + ABZR87_RS17610 0.53 -0.1

Or see this region's nucleotide sequence